Wall clock time and date at job start Tue Mar 31 2020 19:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47342 * 2 1 4 4 C 1.52991 * 109.47382 * 120.00449 * 2 1 3 5 5 H 1.09005 * 109.49099 * 300.02499 * 4 2 1 6 6 C 1.53090 * 109.48458 * 179.97438 * 4 2 1 7 7 C 1.53176 * 109.16592 * 182.40427 * 6 4 2 8 8 H 1.09005 * 109.54202 * 176.93685 * 7 6 4 9 9 C 1.50702 * 109.54579 * 297.11668 * 7 6 4 10 10 O 1.21282 * 119.99874 * 6.01676 * 9 7 6 11 11 N 1.34772 * 119.99783 * 186.01742 * 9 7 6 12 12 C 1.47627 * 120.90539 * 4.56134 * 11 9 7 13 13 C 1.53882 * 107.50203 * 132.49234 * 12 11 9 14 14 H 1.09002 * 112.09732 * 182.66471 * 13 12 11 15 15 C 1.54546 * 108.36893 * 307.00695 * 13 12 11 16 16 C 1.54276 * 104.84922 * 89.30075 * 15 13 12 17 17 C 1.54963 * 104.81008 * 359.81128 * 16 15 13 18 18 H 1.08997 * 112.25663 * 146.61175 * 17 16 15 19 19 C 1.47162 * 120.70771 * 185.24493 * 11 9 7 20 20 N 1.48309 * 107.20989 * 59.11606 * 13 12 11 21 21 C 1.36934 * 128.07788 * 106.09749 * 20 13 12 22 22 H 1.07995 * 120.00199 * 13.92598 * 21 20 13 23 23 C 1.38817 * 119.99794 * 193.92926 * 21 20 13 24 24 N 1.31618 * 119.99761 * 9.64919 * 23 21 20 25 25 Si 1.86801 * 119.99682 * 189.64807 * 23 21 20 26 26 H 1.48500 * 109.46892 * 269.99585 * 25 23 21 27 27 H 1.48491 * 109.47461 * 29.99867 * 25 23 21 28 28 H 1.48501 * 109.46776 * 150.00207 * 25 23 21 29 29 C 1.53184 * 109.10714 * 57.02860 * 7 6 4 30 30 C 1.53277 * 109.06125 * 303.05514 * 29 7 6 31 31 O 1.42905 * 109.48213 * 60.05230 * 4 2 1 32 32 H 1.09000 * 109.46548 * 299.99963 * 1 2 3 33 33 H 1.08998 * 109.47037 * 59.99500 * 1 2 3 34 34 H 1.08992 * 109.46974 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46548 * 240.00037 * 2 1 3 36 36 H 1.09003 * 109.47040 * 300.00423 * 3 2 1 37 37 H 1.08998 * 109.46989 * 60.00032 * 3 2 1 38 38 H 1.08997 * 109.47387 * 180.02562 * 3 2 1 39 39 H 1.09004 * 109.51721 * 62.49903 * 6 4 2 40 40 H 1.09000 * 109.57403 * 302.34901 * 6 4 2 41 41 H 1.09001 * 109.37998 * 13.37966 * 12 11 9 42 42 H 1.09002 * 110.63248 * 252.31670 * 12 11 9 43 43 H 1.09000 * 110.36171 * 208.14135 * 15 13 12 44 44 H 1.08999 * 110.36303 * 330.34290 * 15 13 12 45 45 H 1.09001 * 110.36652 * 118.84601 * 16 15 13 46 46 H 1.08999 * 110.36164 * 241.04842 * 16 15 13 47 47 H 1.09004 * 109.74991 * 107.60826 * 19 11 9 48 48 H 1.08997 * 109.75016 * 346.87616 * 19 11 9 49 49 H 0.97000 * 119.99418 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.52334 * 62.88046 * 29 7 6 51 51 H 1.08997 * 109.51968 * 183.06941 * 29 7 6 52 52 H 1.09000 * 109.46240 * 297.55973 * 30 29 7 53 53 H 1.09005 * 109.45808 * 177.54903 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6766 -0.2080 2.1394 6 6 3.5710 -0.7220 1.2490 7 6 4.0736 -1.4975 2.4706 8 1 5.1622 -1.5484 2.4476 9 6 3.6280 -0.7991 3.7295 10 8 2.8829 0.1554 3.6621 11 7 4.0577 -1.2352 4.9301 12 6 5.0423 -2.3305 5.0311 13 6 6.1293 -1.8855 6.0253 14 1 6.9243 -2.6249 6.1217 15 6 6.6655 -0.5074 5.5761 16 6 5.7540 0.5198 6.2790 17 6 4.7445 -0.3341 7.0870 18 1 4.4494 0.1477 8.0192 19 6 3.5440 -0.6394 6.1739 20 7 5.4563 -1.6144 7.3188 21 6 5.4815 -2.3722 8.4591 22 1 6.2094 -3.1629 8.5660 23 6 4.5715 -2.1242 9.4775 24 7 3.5685 -1.2960 9.2765 25 14 4.7704 -2.9659 11.1332 26 1 4.0326 -4.2547 11.1251 27 1 6.2107 -3.2217 11.3887 28 1 4.2259 -2.0906 12.2021 29 6 3.4935 -2.9149 2.4382 30 6 1.9638 -2.8288 2.3914 31 8 1.5649 -2.0690 1.2486 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.6767 1.9564 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 3.1301 1.4425 -0.0005 39 1 3.9356 0.3043 1.2937 40 1 3.9359 -1.1988 0.3393 41 1 5.4884 -2.5071 4.0523 42 1 4.5663 -3.2431 5.3898 43 1 7.6993 -0.3796 5.8973 44 1 6.5903 -0.4057 4.4935 45 1 6.3395 1.1528 6.9458 46 1 5.2302 1.1287 5.5422 47 1 2.8737 -1.3419 6.6693 48 1 3.0097 0.2831 5.9472 49 1 2.9323 -1.1230 9.9880 50 1 3.8559 -3.4367 1.5525 51 1 3.8028 -3.4555 3.3327 52 1 1.5996 -2.3428 3.2966 53 1 1.5455 -3.8331 2.3243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029543606.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:42 Heat of formation + Delta-G solvation = -71.597062 kcal Electronic energy + Delta-G solvation = -32394.615525 eV Core-core repulsion = 28459.004637 eV Total energy + Delta-G solvation = -3935.610889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.06970 -40.51827 -38.82666 -36.37224 -35.48624 -34.68591 -34.05341 -32.13627 -31.06894 -30.98226 -28.31136 -27.89204 -26.41451 -25.53664 -25.25381 -24.49237 -22.72556 -21.24700 -21.12689 -20.87093 -19.88517 -18.47522 -17.65936 -17.42976 -17.21098 -16.91958 -16.55915 -16.38701 -15.71457 -15.51181 -15.19287 -15.13570 -14.69331 -14.67212 -14.50631 -14.39947 -14.16704 -13.64012 -13.58452 -13.53955 -13.26215 -13.14396 -13.03739 -12.90084 -12.79909 -12.74400 -12.55146 -12.40561 -12.13638 -12.03310 -11.99629 -11.81990 -11.73211 -11.51026 -11.47363 -11.41826 -11.18055 -11.12574 -10.80698 -10.54343 -10.09615 -9.66958 -8.70863 -7.84603 -5.19801 1.47890 1.49696 1.57568 1.71434 2.14518 2.50992 2.82958 3.34745 3.46620 3.52215 3.66191 3.80493 3.92936 4.00351 4.08997 4.12149 4.18249 4.21972 4.25072 4.32256 4.35403 4.40830 4.46906 4.57343 4.64120 4.70117 4.72434 4.77587 4.79295 4.85654 4.86622 4.92890 4.97768 5.01062 5.03204 5.04505 5.07306 5.08635 5.10709 5.16555 5.22728 5.26457 5.32264 5.40449 5.45162 5.49972 5.53775 5.58023 5.85662 6.23043 6.33886 6.66532 7.05864 7.29901 7.73838 8.51978 9.26417 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.003343 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.988680 B = 8372.662915 C = 8571.725992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.142 4.142 4 C 0.079 3.921 5 H 0.054 0.946 6 C -0.122 4.122 7 C -0.106 4.106 8 H 0.125 0.875 9 C 0.507 3.493 10 O -0.585 6.585 11 N -0.591 5.591 12 C 0.100 3.900 13 C 0.126 3.874 14 H 0.095 0.905 15 C -0.110 4.110 16 C -0.128 4.128 17 C 0.165 3.835 18 H 0.078 0.922 19 C 0.130 3.870 20 N -0.605 5.605 21 C -0.228 4.228 22 H 0.084 0.916 23 C -0.058 4.058 24 N -0.940 5.940 25 Si 0.970 3.030 26 H -0.290 1.290 27 H -0.271 1.271 28 H -0.301 1.301 29 C -0.141 4.141 30 C 0.059 3.941 31 O -0.388 6.388 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.035 0.965 48 H 0.052 0.948 49 H 0.245 0.755 50 H 0.110 0.890 51 H 0.084 0.916 52 H 0.013 0.987 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 -1.141 -19.643 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 C -0.199 4.199 4 C 0.022 3.978 5 H 0.072 0.928 6 C -0.160 4.160 7 C -0.127 4.127 8 H 0.143 0.857 9 C 0.297 3.703 10 O -0.467 6.467 11 N -0.323 5.323 12 C -0.024 4.024 13 C 0.019 3.981 14 H 0.113 0.887 15 C -0.148 4.148 16 C -0.167 4.167 17 C 0.058 3.942 18 H 0.095 0.905 19 C 0.005 3.995 20 N -0.327 5.327 21 C -0.357 4.357 22 H 0.101 0.899 23 C -0.252 4.252 24 N -0.588 5.588 25 Si 0.800 3.200 26 H -0.217 1.217 27 H -0.195 1.195 28 H -0.228 1.228 29 C -0.179 4.179 30 C -0.018 4.018 31 O -0.307 6.307 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.131 0.869 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.129 0.871 51 H 0.103 0.897 52 H 0.031 0.969 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.539 -0.778 -19.558 19.737 hybrid contribution -0.493 -0.106 2.095 2.155 sum 2.046 -0.884 -17.462 17.604 Atomic orbital electron populations 1.21737 0.95050 1.01645 1.01389 1.21086 0.96306 0.96100 0.96661 1.21814 1.01576 0.94621 1.01872 1.22488 0.93660 0.82529 0.99163 0.92833 1.22015 0.95902 1.01080 0.96967 1.21479 1.03485 0.96280 0.91465 0.85705 1.21230 0.80021 0.83584 0.85428 1.90576 1.38997 1.30039 1.87070 1.48307 1.42580 1.36203 1.05168 1.22702 0.90045 0.88409 1.01201 1.22267 0.93864 0.96633 0.85382 0.88717 1.22389 0.98543 0.94379 0.99526 1.22563 0.98000 0.97704 0.98416 1.21802 0.90062 0.87020 0.95363 0.90456 1.21826 0.97199 0.96344 0.84084 1.45368 1.56706 1.21861 1.08727 1.19325 1.11484 1.12259 0.92648 0.89856 1.25518 0.96341 1.01300 1.02080 1.70040 1.15487 1.40772 1.32474 0.85212 0.77674 0.77167 0.79989 1.21710 1.19547 1.22778 1.22278 0.95649 0.94717 1.05236 1.22593 0.95101 0.96526 0.87602 1.87823 1.75431 1.24098 1.43397 0.94418 0.91138 0.92890 0.89656 0.90701 0.94174 0.91729 0.90584 0.88365 0.86896 0.92783 0.91299 0.90505 0.93045 0.92961 0.94703 0.92973 0.94574 0.87140 0.89704 0.96867 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.05 71.98 0.65 -2.42 16 2 C -0.08 -1.79 2.72 -10.79 -0.03 -1.82 16 3 C -0.14 -2.78 8.84 71.98 0.64 -2.14 16 4 C 0.08 2.10 1.94 30.62 0.06 2.16 16 5 H 0.05 1.87 5.59 -2.38 -0.01 1.86 16 6 C -0.12 -2.70 4.15 30.68 0.13 -2.57 16 7 C -0.11 -2.44 2.19 -11.42 -0.02 -2.46 16 8 H 0.13 2.18 7.07 -2.38 -0.02 2.16 16 9 C 0.51 16.81 5.75 87.66 0.50 17.32 16 10 O -0.59 -23.59 13.12 -3.03 -0.04 -23.63 16 11 N -0.59 -21.03 2.24 -813.81 -1.82 -22.85 16 12 C 0.10 3.04 4.38 86.46 0.38 3.42 16 13 C 0.13 4.31 4.27 45.47 0.19 4.50 16 14 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 15 C -0.11 -3.37 6.18 31.55 0.20 -3.18 16 16 C -0.13 -4.81 6.21 31.70 0.20 -4.62 16 17 C 0.17 7.62 3.15 45.61 0.14 7.76 16 18 H 0.08 4.23 6.27 -2.39 -0.01 4.21 16 19 C 0.13 5.87 5.86 86.55 0.51 6.38 16 20 N -0.60 -27.85 2.81 -635.92 -1.78 -29.64 16 21 C -0.23 -11.72 10.38 84.04 0.87 -10.85 16 22 H 0.08 4.07 7.85 -2.91 -0.02 4.04 16 23 C -0.06 -3.14 5.42 84.86 0.46 -2.68 16 24 N -0.94 -53.73 10.48 21.65 0.23 -53.50 16 25 Si 0.97 44.03 29.56 68.60 2.03 46.06 16 26 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 28 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 29 C -0.14 -2.90 5.35 30.75 0.16 -2.73 16 30 C 0.06 1.51 6.62 72.07 0.48 1.98 16 31 O -0.39 -10.60 9.74 -148.98 -1.45 -12.05 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.22 7.68 -2.39 -0.02 1.21 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 1.17 6.49 -2.39 -0.02 1.15 16 39 H 0.08 1.75 6.53 -2.38 -0.02 1.74 16 40 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.11 2.38 5.44 -2.39 -0.01 2.36 16 42 H 0.05 1.80 7.97 -2.39 -0.02 1.78 16 43 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 44 H 0.08 1.99 7.86 -2.39 -0.02 1.97 16 45 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.05 1.96 7.85 -2.39 -0.02 1.94 16 47 H 0.03 1.83 7.94 -2.38 -0.02 1.82 16 48 H 0.05 2.46 7.08 -2.39 -0.02 2.44 16 49 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 50 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.08 1.74 5.94 -2.39 -0.01 1.73 16 52 H 0.01 0.43 7.38 -2.39 -0.02 0.41 16 53 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -65.63 384.52 3.55 -62.07 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.88 Total: 25.49 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.51 Total: 8.04 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -3.38 Total: -105.99 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.49 Total: -35.67 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -65.63 3.55 -62.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029543606.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.523 kcal (2) G-P(sol) polarization free energy of solvation -65.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds