Wall clock time and date at job start Tue Mar 31 2020 21:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 H 1.08998 * 109.89731 * 305.93291 * 3 2 1 5 5 C 1.54380 * 109.82941 * 185.00080 * 3 2 1 6 6 C 1.55308 * 102.25196 * 219.13227 * 5 3 2 7 7 C 1.54945 * 100.94438 * 34.13704 * 6 5 3 8 8 H 1.09001 * 110.31225 * 82.56302 * 7 6 5 9 9 C 1.50692 * 110.30946 * 204.64374 * 7 6 5 10 10 O 1.21284 * 120.00565 * 114.99421 * 9 7 6 11 11 N 1.34780 * 119.99753 * 294.99234 * 9 7 6 12 12 C 1.46942 * 120.56345 * 180.02562 * 11 9 7 13 13 C 1.53314 * 108.70180 * 125.78135 * 12 11 9 14 14 C 1.52274 * 109.41627 * 53.51929 * 13 12 11 15 15 C 1.54820 * 110.17120 * 177.60871 * 14 13 12 16 16 C 1.55024 * 101.63423 * 276.30346 * 15 14 13 17 17 N 1.47476 * 104.90576 * 323.72550 * 16 15 14 18 18 C 1.36933 * 125.66369 * 203.99613 * 17 16 15 19 19 H 1.08001 * 119.99821 * 170.02064 * 18 17 16 20 20 C 1.38804 * 120.00130 * 350.02067 * 18 17 16 21 21 N 1.31624 * 119.99828 * 350.40490 * 20 18 17 22 22 Si 1.86802 * 120.00065 * 170.40864 * 20 18 17 23 23 H 1.48497 * 109.47055 * 94.14279 * 22 20 18 24 24 H 1.48504 * 109.46905 * 214.14083 * 22 20 18 25 25 H 1.48500 * 109.47165 * 334.14048 * 22 20 18 26 26 C 1.47186 * 108.67328 * 24.01341 * 17 16 15 27 27 C 1.52273 * 111.27208 * 300.36089 * 14 13 12 28 28 C 1.46921 * 120.56766 * 0.02593 * 11 9 7 29 29 O 1.43233 * 109.82944 * 66.87032 * 3 2 1 30 30 H 1.09000 * 109.47186 * 299.99500 * 1 2 3 31 31 H 1.09008 * 109.47686 * 59.99621 * 1 2 3 32 32 H 1.09006 * 109.47495 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46719 * 240.00297 * 2 1 3 34 34 H 1.08996 * 109.47403 * 120.00680 * 2 1 3 35 35 H 1.08998 * 110.85009 * 100.94256 * 5 3 2 36 36 H 1.08998 * 111.02423 * 337.39948 * 5 3 2 37 37 H 1.09000 * 111.12392 * 276.21150 * 6 5 3 38 38 H 1.09004 * 111.15779 * 152.06838 * 6 5 3 39 39 H 1.09000 * 109.59778 * 6.01618 * 12 11 9 40 40 H 1.08998 * 109.59274 * 245.55048 * 12 11 9 41 41 H 1.08998 * 109.48204 * 293.53446 * 13 12 11 42 42 H 1.08999 * 109.48365 * 173.50968 * 13 12 11 43 43 H 1.08996 * 110.87234 * 158.24725 * 15 14 13 44 44 H 1.09000 * 111.08928 * 34.45389 * 15 14 13 45 45 H 1.09000 * 110.35517 * 204.86484 * 16 15 14 46 46 H 1.09007 * 110.44052 * 82.62682 * 16 15 14 47 47 H 0.96999 * 119.99584 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.90625 * 117.86975 * 26 17 16 49 49 H 1.09000 * 109.90797 * 238.93653 * 26 17 16 50 50 H 1.09004 * 109.48059 * 179.62492 * 27 14 13 51 51 H 1.09003 * 109.47699 * 299.65255 * 27 14 13 52 52 H 1.09008 * 109.59623 * 353.98038 * 28 11 9 53 53 H 1.09002 * 109.59995 * 114.44571 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9927 -0.8299 5 6 3.5785 1.4540 -0.1266 6 6 3.9797 2.6053 0.8354 7 6 2.8994 2.4588 1.9364 8 1 3.1872 1.6852 2.6484 9 6 2.6946 3.7721 2.6463 10 8 1.6307 4.3482 2.5611 11 7 3.6937 4.3066 3.3761 12 6 3.5074 5.5862 4.0740 13 6 3.8521 5.3931 5.5553 14 6 5.2440 4.7874 5.6764 15 6 5.6344 4.6403 7.1673 16 6 6.1700 6.0584 7.4916 17 7 6.8625 6.4923 6.2639 18 6 7.8591 7.4291 6.1981 19 1 8.4142 7.5634 5.2814 20 6 8.1560 8.2059 7.3094 21 7 7.3648 8.1797 8.3610 22 14 9.6782 9.2887 7.3125 23 1 9.3121 10.6585 6.8713 24 1 10.2427 9.3451 8.6849 25 1 10.6898 8.7233 6.3840 26 6 6.3043 5.7515 5.1211 27 6 5.3231 3.4396 4.9722 28 6 4.9877 3.6197 3.4875 29 8 1.7029 2.0770 1.2391 30 1 -0.3633 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.8819 1.6792 -1.1490 36 1 4.0051 0.5067 0.2031 37 1 3.9076 3.5738 0.3405 38 1 4.9788 2.4482 1.2420 39 1 2.4700 5.9069 3.9788 40 1 4.1662 6.3384 3.6402 41 1 3.1236 4.7245 6.0139 42 1 3.8300 6.3576 6.0625 43 1 6.4148 3.8897 7.2921 44 1 4.7642 4.4019 7.7789 45 1 6.8690 6.0179 8.3270 46 1 5.3455 6.7337 7.7205 47 1 7.5724 8.7223 9.1377 48 1 5.8433 6.4456 4.4184 49 1 7.0934 5.1884 4.6227 50 1 6.3310 3.0364 5.0711 51 1 4.6099 2.7506 5.4248 52 1 4.9262 2.6438 3.0057 53 1 5.7620 4.2186 3.0080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035189414.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:23 Heat of formation + Delta-G solvation = -81.162623 kcal Electronic energy + Delta-G solvation = -30852.928990 eV Core-core repulsion = 26916.903308 eV Total energy + Delta-G solvation = -3936.025683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.88610 -40.65538 -39.39786 -37.19637 -34.94995 -34.47784 -33.34146 -32.43515 -32.17987 -30.68211 -29.49973 -27.73511 -26.53794 -25.35396 -24.20980 -23.74216 -22.69730 -22.06064 -21.78897 -20.78904 -19.25668 -18.90191 -18.35414 -17.50635 -17.09709 -16.82980 -16.74426 -16.36226 -15.91349 -15.64271 -15.34872 -15.04673 -14.85846 -14.61661 -14.40875 -14.22491 -14.08444 -13.98821 -13.82195 -13.75208 -13.44319 -13.14662 -12.98924 -12.88586 -12.74858 -12.72911 -12.45838 -12.35653 -12.25791 -12.15404 -11.97197 -11.85493 -11.77327 -11.71239 -11.58081 -11.41636 -11.20925 -11.12803 -10.90926 -10.63569 -10.33458 -9.65188 -8.80602 -7.86103 -5.19332 1.46044 1.46887 1.51242 1.56557 1.76893 2.50805 2.87464 3.31841 3.33555 3.54715 3.65050 3.70302 3.75917 3.84655 3.92528 4.01884 4.09760 4.10962 4.20351 4.26649 4.29087 4.34989 4.46415 4.49065 4.54482 4.60558 4.66374 4.71614 4.75211 4.78534 4.84453 4.86939 4.91386 4.98526 5.01204 5.03738 5.08834 5.10523 5.12283 5.16184 5.24660 5.34550 5.38490 5.42447 5.44395 5.49128 5.60819 5.65160 5.78804 6.02207 6.23578 6.39973 7.11133 7.11630 7.80810 8.47698 9.25939 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.027711 B = 0.002392 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.180134 B =11701.190743 C =11965.856318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.065 3.935 4 H 0.072 0.928 5 C -0.139 4.139 6 C -0.146 4.146 7 C 0.066 3.934 8 H 0.121 0.879 9 C 0.508 3.492 10 O -0.582 6.582 11 N -0.598 5.598 12 C 0.118 3.882 13 C -0.105 4.105 14 C -0.058 4.058 15 C -0.122 4.122 16 C 0.180 3.820 17 N -0.624 5.624 18 C -0.238 4.238 19 H 0.079 0.921 20 C -0.068 4.068 21 N -0.950 5.950 22 Si 0.974 3.026 23 H -0.290 1.290 24 H -0.295 1.295 25 H -0.266 1.266 26 C 0.143 3.857 27 C -0.111 4.111 28 C 0.100 3.900 29 O -0.381 6.381 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.124 0.876 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.027 0.973 46 H -0.010 1.010 47 H 0.246 0.754 48 H 0.016 0.984 49 H 0.037 0.963 50 H 0.095 0.905 51 H 0.080 0.920 52 H 0.121 0.879 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.145 -20.779 -17.187 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.008 3.992 4 H 0.090 0.910 5 C -0.176 4.176 6 C -0.183 4.183 7 C 0.005 3.995 8 H 0.138 0.862 9 C 0.297 3.703 10 O -0.462 6.462 11 N -0.331 5.331 12 C -0.004 4.004 13 C -0.143 4.143 14 C -0.058 4.058 15 C -0.160 4.160 16 C 0.055 3.945 17 N -0.350 5.350 18 C -0.367 4.367 19 H 0.097 0.903 20 C -0.261 4.261 21 N -0.599 5.599 22 Si 0.803 3.197 23 H -0.217 1.217 24 H -0.221 1.221 25 H -0.191 1.191 26 C 0.019 3.981 27 C -0.149 4.149 28 C -0.022 4.022 29 O -0.300 6.300 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.142 0.858 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.046 0.954 46 H 0.008 0.992 47 H 0.055 0.945 48 H 0.034 0.966 49 H 0.055 0.945 50 H 0.113 0.887 51 H 0.099 0.901 52 H 0.139 0.861 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.816 -20.311 -17.069 27.392 hybrid contribution 0.543 1.647 0.702 1.871 sum -6.273 -18.664 -16.368 25.605 Atomic orbital electron populations 1.21724 0.96275 1.01737 1.01231 1.21898 0.96211 0.94764 1.03589 1.23097 0.96286 0.94029 0.85747 0.91009 1.23202 0.93124 0.99630 1.01655 1.23434 0.99381 1.00392 0.95115 1.22938 0.87099 0.93026 0.96387 0.86187 1.21169 0.82963 0.87406 0.78772 1.90674 1.27865 1.64027 1.63594 1.48102 1.14100 1.22390 1.48519 1.21498 1.01748 0.85255 0.91940 1.21618 0.96335 1.00978 0.95408 1.20964 0.93606 0.95754 0.95524 1.22921 1.00487 0.97059 0.95557 1.21167 0.93261 0.90962 0.89159 1.44844 1.41502 1.45222 1.03428 1.19393 1.08179 1.10923 0.98212 0.90282 1.25641 1.02083 1.01226 0.97121 1.70175 1.38751 1.44497 1.06452 0.85128 0.79515 0.78419 0.76652 1.21696 1.22140 1.19089 1.21539 0.93896 0.92798 0.89898 1.21794 1.03727 0.94915 0.94455 1.22254 0.83510 0.98984 0.97423 1.88548 1.28853 1.78418 1.34194 0.94383 0.92918 0.91706 0.88660 0.91113 0.88058 0.87669 0.91163 0.85772 0.90809 0.91507 0.91087 0.92873 0.90805 0.90570 0.95431 0.99154 0.94494 0.96623 0.94513 0.88661 0.90096 0.86095 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.83 71.98 0.71 -1.50 16 2 C -0.13 -1.47 5.51 30.59 0.17 -1.31 16 3 C 0.07 0.98 3.51 31.06 0.11 1.09 16 4 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 5 C -0.14 -1.18 6.54 31.86 0.21 -0.98 16 6 C -0.15 -1.73 5.73 32.05 0.18 -1.55 16 7 C 0.07 1.24 2.92 30.51 0.09 1.33 16 8 H 0.12 1.64 7.58 -2.39 -0.02 1.62 16 9 C 0.51 13.86 7.12 87.65 0.62 14.49 16 10 O -0.58 -22.00 15.95 15.46 0.25 -21.76 16 11 N -0.60 -14.49 2.96 -818.48 -2.42 -16.92 16 12 C 0.12 3.49 6.14 86.40 0.53 4.02 16 13 C -0.11 -3.24 4.78 30.46 0.15 -3.09 16 14 C -0.06 -1.73 0.54 -51.81 -0.03 -1.76 16 15 C -0.12 -4.19 6.00 31.91 0.19 -4.00 16 16 C 0.18 8.72 5.11 86.89 0.44 9.16 16 17 N -0.62 -31.29 3.40 -692.45 -2.36 -33.64 16 18 C -0.24 -13.20 10.24 84.03 0.86 -12.34 16 19 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 20 C -0.07 -3.85 5.40 84.86 0.46 -3.40 16 21 N -0.95 -57.60 10.68 21.65 0.23 -57.36 16 22 Si 0.97 45.72 29.56 68.60 2.03 47.75 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 C 0.14 5.43 5.43 86.48 0.47 5.90 16 27 C -0.11 -2.22 4.71 30.44 0.14 -2.08 16 28 C 0.10 1.70 5.29 86.39 0.46 2.15 16 29 O -0.38 -9.01 9.90 -130.48 -1.29 -10.30 16 30 H 0.04 0.74 7.90 -2.39 -0.02 0.72 16 31 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.10 0.47 7.86 -2.39 -0.02 0.45 16 37 H 0.07 1.07 8.05 -2.39 -0.02 1.06 16 38 H 0.12 0.76 6.35 -2.39 -0.02 0.75 16 39 H 0.07 2.41 7.00 -2.39 -0.02 2.39 16 40 H 0.07 2.06 6.53 -2.39 -0.02 2.05 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 1.96 7.51 -2.39 -0.02 1.94 16 43 H 0.07 2.36 8.02 -2.39 -0.02 2.34 16 44 H 0.08 2.36 8.01 -2.39 -0.02 2.34 16 45 H 0.03 1.52 6.94 -2.39 -0.02 1.50 16 46 H -0.01 -0.52 7.71 -2.38 -0.02 -0.54 16 47 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 48 H 0.02 0.63 6.07 -2.39 -0.01 0.61 16 49 H 0.04 1.30 7.58 -2.39 -0.02 1.28 16 50 H 0.09 1.69 8.11 -2.39 -0.02 1.67 16 51 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.12 1.16 4.40 -2.38 -0.01 1.15 16 53 H 0.08 1.38 7.47 -2.39 -0.02 1.36 16 Total: -1.00 -77.52 392.93 3.08 -74.44 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.88 Total: 11.64 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 5.76 Total: 6.15 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -4.55 Total: -107.92 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.05 Total: -32.05 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -77.52 3.08 -74.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035189414.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.718 kcal (2) G-P(sol) polarization free energy of solvation -77.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds