Wall clock time and date at job start Tue Mar 31 2020 21:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47318 * 2 1 4 4 H 1.09000 * 109.86706 * 54.55531 * 3 2 1 5 5 C 1.54099 * 110.00617 * 175.63743 * 3 2 1 6 6 C 1.54811 * 104.18544 * 121.52740 * 5 3 2 7 7 C 1.54995 * 102.09460 * 20.87940 * 6 5 3 8 8 H 1.09007 * 110.74598 * 81.54176 * 7 6 5 9 9 C 1.50693 * 110.62342 * 204.47639 * 7 6 5 10 10 O 1.21280 * 120.00214 * 110.52370 * 9 7 6 11 11 N 1.34778 * 119.99820 * 290.52893 * 9 7 6 12 12 C 1.46938 * 120.56278 * 179.97438 * 11 9 7 13 13 C 1.53318 * 108.70078 * 125.73806 * 12 11 9 14 14 C 1.52262 * 109.41581 * 53.52482 * 13 12 11 15 15 C 1.54539 * 110.15986 * 62.82473 * 14 13 12 16 16 C 1.55017 * 101.52722 * 153.28125 * 15 14 13 17 17 N 1.47487 * 104.99515 * 323.55968 * 16 15 14 18 18 C 1.36934 * 125.66593 * 204.07329 * 17 16 15 19 19 H 1.07995 * 120.00082 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99640 * 0.02562 * 18 17 16 21 21 N 1.31615 * 120.00165 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99749 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47269 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46942 * 120.00603 * 22 20 18 25 25 H 1.48493 * 109.47140 * 240.00207 * 22 20 18 26 26 C 1.47448 * 108.53306 * 24.04880 * 17 16 15 27 27 C 1.52279 * 111.27212 * 300.35307 * 14 13 12 28 28 C 1.46925 * 120.56406 * 359.97295 * 11 9 7 29 29 O 1.43738 * 109.87987 * 293.54895 * 3 2 1 30 30 H 1.08998 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46774 * 299.99587 * 1 2 3 32 32 H 1.08994 * 109.47199 * 59.99750 * 1 2 3 33 33 H 1.08996 * 109.47489 * 240.00219 * 2 1 3 34 34 H 1.09004 * 109.47175 * 120.00016 * 2 1 3 35 35 H 1.08998 * 110.48877 * 240.20229 * 5 3 2 36 36 H 1.09000 * 110.48348 * 2.72250 * 5 3 2 37 37 H 1.09005 * 110.90763 * 262.68469 * 6 5 3 38 38 H 1.08995 * 110.90930 * 139.08432 * 6 5 3 39 39 H 1.09003 * 109.59688 * 5.97452 * 12 11 9 40 40 H 1.08996 * 109.59795 * 245.50488 * 12 11 9 41 41 H 1.09007 * 109.47863 * 293.53937 * 13 12 11 42 42 H 1.08999 * 109.47998 * 173.51099 * 13 12 11 43 43 H 1.09001 * 111.01025 * 35.22025 * 15 14 13 44 44 H 1.08999 * 111.01608 * 271.33968 * 15 14 13 45 45 H 1.09002 * 110.35503 * 82.46997 * 16 15 14 46 46 H 1.08997 * 110.35377 * 204.65057 * 16 15 14 47 47 H 0.97008 * 120.00037 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.88070 * 239.11534 * 26 17 16 49 49 H 1.08996 * 109.90339 * 117.86837 * 26 17 16 50 50 H 1.09001 * 109.48232 * 179.62500 * 27 14 13 51 51 H 1.09000 * 109.47955 * 299.65331 * 27 14 13 52 52 H 1.09000 * 109.59943 * 354.02196 * 28 11 9 53 53 H 1.09005 * 109.59602 * 114.33327 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6031 1.9899 0.8351 5 6 3.5770 1.4582 0.1101 6 6 4.0406 2.2142 -1.1588 7 6 2.7642 3.0000 -1.5531 8 1 2.6742 3.9119 -0.9626 9 6 2.7726 3.3218 -3.0253 10 8 1.9877 2.7742 -3.7702 11 7 3.6524 4.2181 -3.5141 12 6 3.6718 4.5408 -4.9475 13 6 3.5357 6.0591 -5.1115 14 6 4.6022 6.7559 -4.2777 15 6 6.0103 6.3749 -4.7878 16 6 6.8394 7.6139 -4.3631 17 7 5.9332 8.7622 -4.5514 18 6 6.3204 10.0595 -4.7569 19 1 5.5760 10.8316 -4.8837 20 6 7.6697 10.3822 -4.8021 21 7 8.5770 9.4412 -4.6480 22 14 8.1979 12.1520 -5.0817 23 1 6.9950 13.0111 -5.2234 24 1 9.0040 12.6168 -3.9243 25 1 9.0147 12.2353 -6.3190 26 6 4.5423 8.2779 -4.4816 27 6 4.4660 6.4056 -2.8020 28 6 4.6084 4.8892 -2.6229 29 8 1.6938 2.0833 -1.2391 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8898 1.9918 1.0077 36 1 3.9695 0.4413 0.1156 37 1 4.3257 1.5155 -1.9454 38 1 4.8606 2.8943 -0.9286 39 1 2.8397 4.0432 -5.4456 40 1 4.6137 4.2088 -5.3843 41 1 2.5478 6.3739 -4.7750 42 1 3.6639 6.3243 -6.1610 43 1 6.0142 6.2545 -5.8711 44 1 6.3741 5.4735 -4.2945 45 1 7.1353 7.5319 -3.3172 46 1 7.7192 7.7172 -4.9982 47 1 9.5199 9.6667 -4.6800 48 1 4.0228 8.5075 -5.4119 49 1 4.0285 8.7450 -3.6415 50 1 5.2458 6.9134 -2.2344 51 1 3.4879 6.7242 -2.4415 52 1 4.3938 4.6215 -1.5883 53 1 5.6229 4.5821 -2.8771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035189416.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:28 Heat of formation + Delta-G solvation = -78.340827 kcal Electronic energy + Delta-G solvation = -30791.716958 eV Core-core repulsion = 26855.813637 eV Total energy + Delta-G solvation = -3935.903320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.87409 -40.64642 -39.41309 -37.20346 -34.94322 -34.53176 -33.34082 -32.43919 -32.09082 -30.34496 -29.73158 -28.16448 -26.16141 -25.21087 -24.49233 -23.57698 -22.81780 -21.94156 -21.81768 -20.93825 -19.38266 -18.69969 -18.06940 -17.54217 -17.24784 -16.88937 -16.71770 -16.30050 -15.93081 -15.56560 -15.51471 -15.00174 -14.74899 -14.54254 -14.47154 -14.41573 -14.23939 -14.02784 -13.88600 -13.68493 -13.49893 -13.12077 -12.91514 -12.87358 -12.77543 -12.67465 -12.44125 -12.36371 -12.16735 -12.13969 -11.96961 -11.92968 -11.71754 -11.63364 -11.55826 -11.44785 -11.19053 -10.99810 -10.89796 -10.71133 -10.51717 -9.65895 -8.83849 -7.75144 -5.18134 1.46822 1.47205 1.48246 1.57374 1.76297 2.50314 2.89336 3.32286 3.34265 3.56612 3.66058 3.71255 3.75246 3.84697 3.92318 3.96970 4.10137 4.10644 4.17718 4.23971 4.31258 4.35700 4.40225 4.50209 4.58139 4.61045 4.67216 4.74603 4.76973 4.78412 4.81659 4.86450 4.90059 4.93002 4.99330 5.03660 5.05821 5.08362 5.10533 5.17101 5.24496 5.27339 5.38726 5.42662 5.43561 5.48950 5.59416 5.73673 5.88887 5.91914 6.34498 6.36348 7.09429 7.14822 7.82137 8.46435 9.26127 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.028194 B = 0.002346 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.893594 B =11930.180231 C =12323.477717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.063 3.937 4 H 0.081 0.919 5 C -0.143 4.143 6 C -0.141 4.141 7 C 0.058 3.942 8 H 0.115 0.885 9 C 0.517 3.483 10 O -0.576 6.576 11 N -0.598 5.598 12 C 0.119 3.881 13 C -0.106 4.106 14 C -0.056 4.056 15 C -0.120 4.120 16 C 0.158 3.842 17 N -0.626 5.626 18 C -0.235 4.235 19 H 0.075 0.925 20 C -0.067 4.067 21 N -0.946 5.946 22 Si 0.976 3.024 23 H -0.270 1.270 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.141 3.859 27 C -0.111 4.111 28 C 0.107 3.893 29 O -0.377 6.377 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.087 0.913 45 H -0.007 1.007 46 H 0.065 0.935 47 H 0.246 0.754 48 H 0.019 0.981 49 H 0.019 0.981 50 H 0.071 0.929 51 H 0.068 0.932 52 H 0.112 0.888 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.651 -18.567 11.765 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.006 3.994 4 H 0.099 0.901 5 C -0.181 4.181 6 C -0.178 4.178 7 C -0.003 4.003 8 H 0.132 0.868 9 C 0.305 3.695 10 O -0.456 6.456 11 N -0.332 5.332 12 C -0.004 4.004 13 C -0.145 4.145 14 C -0.057 4.057 15 C -0.158 4.158 16 C 0.033 3.967 17 N -0.352 5.352 18 C -0.364 4.364 19 H 0.093 0.907 20 C -0.259 4.259 21 N -0.596 5.596 22 Si 0.805 3.195 23 H -0.195 1.195 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.016 3.984 27 C -0.150 4.150 28 C -0.014 4.014 29 O -0.296 6.296 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.011 0.989 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.037 0.963 49 H 0.037 0.963 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.130 0.870 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.106 -18.767 11.238 24.096 hybrid contribution 0.501 1.470 -0.433 1.613 sum -9.605 -17.296 10.805 22.543 Atomic orbital electron populations 1.21715 0.95809 1.01833 1.01454 1.21748 0.96515 0.94509 1.03044 1.23133 0.95637 0.94429 0.86215 0.90125 1.23034 0.93706 1.02887 0.98464 1.23202 0.96300 0.99717 0.98630 1.23100 0.89477 0.95956 0.91773 0.86803 1.20727 0.79543 0.78608 0.90577 1.90674 1.40890 1.52972 1.61018 1.48090 1.35048 1.40820 1.09201 1.21592 1.03054 0.94981 0.80738 1.21696 0.98217 0.94239 1.00339 1.20880 0.95416 0.93381 0.96027 1.22933 0.94606 0.98136 1.00132 1.21701 0.93882 0.84360 0.96778 1.44915 1.01542 1.04239 1.84491 1.19439 0.91569 0.84731 1.40651 0.90696 1.25558 0.95810 1.01598 1.02969 1.70059 0.99753 1.31662 1.58138 0.85041 0.77889 0.79776 0.76820 1.19463 1.21868 1.21937 1.21489 0.86350 0.93358 0.97209 1.21708 1.02488 0.95856 0.94906 1.22134 0.93185 0.91218 0.94891 1.89006 1.42252 1.56816 1.41559 0.91917 0.91994 0.94542 0.92515 0.88271 0.87842 0.88938 0.91131 0.86643 0.90194 0.90051 0.91889 0.90477 0.92405 0.89445 0.98896 0.91665 0.94417 0.96275 0.96286 0.91070 0.91289 0.86992 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.82 71.98 0.71 -1.61 16 2 C -0.12 -1.67 5.43 30.59 0.17 -1.51 16 3 C 0.06 0.95 3.41 30.97 0.11 1.05 16 4 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 5 C -0.14 -1.44 6.65 31.58 0.21 -1.23 16 6 C -0.14 -1.87 5.93 31.89 0.19 -1.68 16 7 C 0.06 1.13 2.75 30.53 0.08 1.21 16 8 H 0.11 1.76 7.40 -2.38 -0.02 1.74 16 9 C 0.52 13.69 7.11 87.65 0.62 14.31 16 10 O -0.58 -20.67 15.97 15.18 0.24 -20.42 16 11 N -0.60 -13.74 2.96 -818.32 -2.42 -16.16 16 12 C 0.12 2.91 6.14 86.40 0.53 3.44 16 13 C -0.11 -2.81 4.72 30.46 0.14 -2.67 16 14 C -0.06 -1.71 0.55 -51.91 -0.03 -1.74 16 15 C -0.12 -4.02 4.92 31.81 0.16 -3.87 16 16 C 0.16 7.34 5.56 86.88 0.48 7.82 16 17 N -0.63 -31.46 3.41 -691.80 -2.36 -33.82 16 18 C -0.23 -13.08 10.29 84.03 0.86 -12.21 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 20 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 21 N -0.95 -55.36 10.09 21.65 0.22 -55.14 16 22 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 C 0.14 5.64 6.44 86.43 0.56 6.20 16 27 C -0.11 -2.80 4.74 30.47 0.14 -2.66 16 28 C 0.11 2.01 5.38 86.42 0.46 2.48 16 29 O -0.38 -9.05 10.09 -130.77 -1.32 -10.37 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.75 7.89 -2.39 -0.02 0.73 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 0.77 7.70 -2.39 -0.02 0.76 16 37 H 0.07 1.13 8.05 -2.38 -0.02 1.12 16 38 H 0.12 0.98 6.68 -2.39 -0.02 0.96 16 39 H 0.08 2.16 7.00 -2.39 -0.02 2.14 16 40 H 0.08 1.85 7.55 -2.39 -0.02 1.83 16 41 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.08 2.05 8.11 -2.39 -0.02 2.03 16 43 H 0.06 1.98 8.01 -2.39 -0.02 1.96 16 44 H 0.09 2.42 6.08 -2.39 -0.01 2.41 16 45 H -0.01 -0.34 7.74 -2.39 -0.02 -0.36 16 46 H 0.07 3.56 5.87 -2.39 -0.01 3.55 16 47 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 48 H 0.02 0.78 7.78 -2.39 -0.02 0.76 16 49 H 0.02 0.77 7.82 -2.39 -0.02 0.75 16 50 H 0.07 2.03 7.47 -2.39 -0.02 2.02 16 51 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 52 H 0.11 1.44 4.61 -2.39 -0.01 1.43 16 53 H 0.09 1.55 6.48 -2.38 -0.02 1.54 16 Total: -1.00 -73.64 392.25 3.13 -70.51 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.88 Total: 13.90 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.87 Total: 4.04 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -4.56 Total: -105.11 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -1.08 Total: -30.80 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.64 3.13 -70.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035189416.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.834 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds