Wall clock time and date at job start Tue Mar 31 2020 19:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47374 * 2 1 4 4 C 1.53003 * 109.47073 * 119.99914 * 2 1 3 5 5 H 1.09002 * 109.89705 * 59.06410 * 4 2 1 6 6 O 1.43588 * 110.04068 * 298.04198 * 4 2 1 7 7 C 1.43646 * 110.01142 * 242.46408 * 6 4 2 8 8 C 1.54949 * 105.13367 * 335.39355 * 7 6 4 9 9 C 1.54379 * 109.83335 * 180.02562 * 4 2 1 10 10 H 1.09000 * 110.84650 * 22.47703 * 9 4 2 11 11 C 1.50701 * 110.84707 * 259.06412 * 9 4 2 12 12 O 1.21273 * 120.00188 * 2.76550 * 11 9 4 13 13 N 1.34774 * 119.99750 * 182.77167 * 11 9 4 14 14 C 1.46888 * 120.46925 * 180.02562 * 13 11 9 15 15 C 1.53340 * 108.76168 * 124.47628 * 14 13 11 16 16 C 1.52671 * 109.11197 * 52.41268 * 15 14 13 17 17 C 1.53482 * 113.61895 * 170.87425 * 16 15 14 18 18 N 1.47674 * 85.98579 * 269.03741 * 17 16 15 19 19 C 1.36933 * 134.45375 * 155.66620 * 18 17 16 20 20 H 1.08003 * 120.00100 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00524 * 0.02562 * 19 18 17 22 22 N 1.31624 * 119.99485 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00514 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46900 * 90.00096 * 23 21 19 25 25 H 1.48499 * 109.47309 * 210.00444 * 23 21 19 26 26 H 1.48505 * 109.47081 * 330.00476 * 23 21 19 27 27 C 1.47660 * 91.08784 * 335.67895 * 18 17 16 28 28 C 1.52670 * 113.18776 * 302.41332 * 16 15 14 29 29 C 1.46888 * 120.46971 * 0.02562 * 13 11 9 30 30 H 1.08999 * 109.47253 * 59.99919 * 1 2 3 31 31 H 1.09005 * 109.47348 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47431 * 300.00045 * 1 2 3 33 33 H 1.08994 * 109.47151 * 239.99711 * 2 1 3 34 34 H 1.08992 * 109.47549 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46997 * 300.00238 * 3 2 1 36 36 H 1.09002 * 109.46878 * 59.99616 * 3 2 1 37 37 H 1.09004 * 110.31330 * 216.47819 * 7 6 4 38 38 H 1.08997 * 110.30730 * 94.30707 * 7 6 4 39 39 H 1.09004 * 111.12279 * 278.52375 * 8 7 6 40 40 H 1.08997 * 111.16241 * 154.37907 * 8 7 6 41 41 H 1.09001 * 109.58768 * 4.68902 * 14 13 11 42 42 H 1.08999 * 109.58832 * 244.25597 * 14 13 11 43 43 H 1.09000 * 109.52453 * 292.52388 * 15 14 13 44 44 H 1.08998 * 109.59286 * 172.34630 * 15 14 13 45 45 H 1.09001 * 113.78675 * 23.29892 * 17 16 15 46 46 H 1.08990 * 113.78921 * 154.76937 * 17 16 15 47 47 H 0.97003 * 119.99428 * 179.97438 * 22 21 19 48 48 H 1.08997 * 113.79624 * 270.05317 * 27 18 17 49 49 H 1.09000 * 113.89750 * 138.59481 * 27 18 17 50 50 H 1.08997 * 109.52828 * 177.47413 * 28 16 15 51 51 H 1.08997 * 109.53039 * 297.69675 * 28 16 15 52 52 H 1.08994 * 109.59041 * 355.30081 * 29 13 11 53 53 H 1.08995 * 109.58676 * 115.59543 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6668 -1.7453 1.2647 6 8 1.6061 -0.0278 2.4294 7 6 2.7436 0.4499 3.1650 8 6 3.9108 -0.4838 2.7565 9 6 3.5837 -0.7256 1.2581 10 1 3.9774 0.0813 0.6400 11 6 4.1189 -2.0581 0.8009 12 8 3.3540 -2.9278 0.4415 13 7 5.4477 -2.2833 0.7917 14 6 5.9806 -3.5781 0.3476 15 6 6.9860 -3.3355 -0.7845 16 6 8.0159 -2.3058 -0.3263 17 6 9.1983 -2.1471 -1.2919 18 7 9.8605 -3.1947 -0.4889 19 6 10.8489 -4.1101 -0.7344 20 1 11.1636 -4.7874 0.0457 21 6 11.4465 -4.1675 -1.9860 22 7 11.0633 -3.3417 -2.9367 23 14 12.7943 -5.4167 -2.3212 24 1 12.1886 -6.6745 -2.8272 25 1 13.7305 -4.8739 -3.3382 26 1 13.5353 -5.6946 -1.0646 27 6 9.0295 -2.8598 0.6848 28 6 7.3915 -0.9794 0.0995 29 6 6.3834 -1.2375 1.2254 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 2.5587 0.3776 4.2368 38 1 2.9682 1.4798 2.8877 39 1 3.8836 -1.4164 3.3202 40 1 4.8729 0.0149 2.8730 41 1 5.1652 -4.2037 -0.0155 42 1 6.4805 -4.0725 1.1805 43 1 6.4615 -2.9601 -1.6633 44 1 7.4898 -4.2697 -1.0323 45 1 8.9751 -2.4523 -2.3143 46 1 9.6861 -1.1742 -1.2335 47 1 11.4812 -3.3816 -3.8112 48 1 9.4671 -2.0986 1.3307 49 1 8.6712 -3.7299 1.2350 50 1 8.1719 -0.3071 0.4561 51 1 6.8803 -0.5277 -0.7506 52 1 5.8335 -0.3213 1.4405 53 1 6.9096 -1.5667 2.1214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035717997.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:20 Heat of formation + Delta-G solvation = -51.680776 kcal Electronic energy + Delta-G solvation = -31157.581914 eV Core-core repulsion = 27222.834661 eV Total energy + Delta-G solvation = -3934.747254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.02230 -40.85439 -39.51393 -37.12575 -35.69181 -34.49398 -33.70634 -32.05853 -31.73210 -29.59324 -28.63463 -28.04706 -26.75238 -25.56654 -24.82466 -23.78930 -23.37442 -22.46527 -21.05674 -20.21548 -19.17374 -18.69156 -18.26512 -17.37846 -17.15694 -16.85351 -16.48308 -16.10636 -16.02948 -15.63714 -15.52421 -15.19222 -15.12642 -14.88411 -14.45127 -14.19659 -14.06012 -13.95453 -13.73743 -13.61556 -13.32818 -13.09281 -12.92636 -12.89894 -12.81909 -12.71888 -12.63132 -12.45601 -12.23860 -12.16080 -12.13268 -11.74706 -11.65315 -11.60784 -11.55129 -11.43755 -11.16560 -11.02234 -10.81041 -10.71765 -10.32994 -9.61474 -8.86219 -7.88736 -5.20215 1.43952 1.45378 1.53562 1.55207 1.94879 2.47923 2.83274 3.32177 3.38206 3.43056 3.50035 3.63592 3.66707 3.90275 3.97310 4.08983 4.09513 4.13632 4.18151 4.24362 4.26808 4.29864 4.43659 4.53254 4.60868 4.70115 4.74334 4.76774 4.78459 4.84712 4.87613 4.89374 4.92676 4.95781 4.97217 5.04760 5.06898 5.10559 5.12426 5.15375 5.22477 5.23346 5.30423 5.35587 5.42619 5.51240 5.54071 5.61216 5.77461 5.98338 6.10506 6.42258 6.95096 7.11502 7.64213 8.61281 9.27930 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.002513 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.451128 B =11141.206647 C =11295.578793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C -0.144 4.144 4 C 0.104 3.896 5 H 0.067 0.933 6 O -0.389 6.389 7 C 0.047 3.953 8 C -0.142 4.142 9 C -0.139 4.139 10 H 0.136 0.864 11 C 0.522 3.478 12 O -0.585 6.585 13 N -0.599 5.599 14 C 0.124 3.876 15 C -0.089 4.089 16 C -0.082 4.082 17 C 0.168 3.832 18 N -0.640 5.640 19 C -0.228 4.228 20 H 0.081 0.919 21 C -0.069 4.069 22 N -0.953 5.953 23 Si 0.973 3.027 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.269 1.269 27 C 0.130 3.870 28 C -0.114 4.114 29 C 0.106 3.894 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.125 0.875 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.031 0.969 46 H 0.018 0.982 47 H 0.246 0.754 48 H 0.052 0.948 49 H 0.048 0.952 50 H 0.092 0.908 51 H 0.068 0.932 52 H 0.119 0.881 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.653 12.739 12.872 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.201 4.201 4 C 0.046 3.954 5 H 0.085 0.915 6 O -0.308 6.308 7 C -0.029 4.029 8 C -0.180 4.180 9 C -0.160 4.160 10 H 0.153 0.847 11 C 0.311 3.689 12 O -0.465 6.465 13 N -0.331 5.331 14 C 0.001 3.999 15 C -0.127 4.127 16 C -0.083 4.083 17 C 0.042 3.958 18 N -0.366 5.366 19 C -0.357 4.357 20 H 0.098 0.902 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.802 3.198 24 H -0.216 1.216 25 H -0.222 1.222 26 H -0.194 1.194 27 C 0.006 3.994 28 C -0.152 4.152 29 C -0.015 4.015 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.143 0.857 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.036 0.964 47 H 0.055 0.945 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.110 0.890 51 H 0.087 0.913 52 H 0.137 0.863 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.006 12.142 12.595 25.105 hybrid contribution 1.463 -1.170 -1.059 2.152 sum -16.543 10.972 11.536 22.959 Atomic orbital electron populations 1.21696 0.94422 1.01291 1.02163 1.21440 0.97146 0.97636 0.96350 1.21851 1.01146 0.94522 1.02575 1.22549 0.91182 0.95679 0.86002 0.91513 1.88471 1.31619 1.74467 1.36279 1.23593 0.84075 0.97771 0.97453 1.23452 1.01826 1.01463 0.91241 1.22985 0.96921 0.95582 1.00516 0.84699 1.20722 0.81786 0.89548 0.76827 1.90668 1.57544 1.47991 1.50335 1.48116 1.05569 1.15303 1.64077 1.21443 0.96287 0.85189 0.96950 1.21340 0.95238 0.98705 0.97424 1.22096 0.93394 0.95902 0.96906 1.22178 0.88666 0.89763 0.95175 1.46326 1.42584 1.36992 1.10736 1.19388 1.10648 1.09170 0.96491 0.90164 1.25556 1.02732 1.01616 0.96284 1.70012 1.45934 1.41011 1.03333 0.85156 0.78822 0.78297 0.77548 1.21552 1.22240 1.19388 1.22771 0.89039 0.97068 0.90525 1.21814 0.98869 0.95518 0.99048 1.22163 0.90844 0.91342 0.97155 0.91880 0.93835 0.92150 0.91599 0.91797 0.92058 0.91734 0.88327 0.89989 0.90726 0.85731 0.90602 0.90555 0.92863 0.92925 0.95075 0.96439 0.94518 0.92990 0.93360 0.88986 0.91324 0.86346 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.07 71.98 0.65 -1.82 16 2 C -0.11 -1.96 2.81 -10.79 -0.03 -1.99 16 3 C -0.14 -1.96 8.77 71.98 0.63 -1.33 16 4 C 0.10 2.10 2.70 31.06 0.08 2.18 16 5 H 0.07 1.79 6.82 -2.39 -0.02 1.77 16 6 O -0.39 -7.32 9.77 -148.98 -1.46 -8.77 16 7 C 0.05 0.53 7.76 72.65 0.56 1.09 16 8 C -0.14 -1.60 5.68 32.04 0.18 -1.41 16 9 C -0.14 -2.32 1.71 -10.30 -0.02 -2.34 16 10 H 0.14 1.74 5.34 -2.39 -0.01 1.73 16 11 C 0.52 12.80 7.08 87.66 0.62 13.42 16 12 O -0.58 -19.42 14.83 -3.01 -0.04 -19.46 16 13 N -0.60 -13.69 2.94 -818.60 -2.41 -16.10 16 14 C 0.12 3.47 6.30 86.42 0.54 4.02 16 15 C -0.09 -2.98 5.21 30.60 0.16 -2.82 16 16 C -0.08 -2.70 0.77 -52.03 -0.04 -2.74 16 17 C 0.17 7.67 6.64 86.31 0.57 8.24 16 18 N -0.64 -31.77 3.53 -722.68 -2.55 -34.32 16 19 C -0.23 -12.71 10.70 84.03 0.90 -11.81 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 21 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 22 N -0.95 -57.83 11.39 21.65 0.25 -57.58 16 23 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.13 4.74 7.73 86.33 0.67 5.41 16 28 C -0.11 -2.55 5.26 30.59 0.16 -2.38 16 29 C 0.11 1.75 5.54 86.41 0.48 2.22 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.84 8.14 -2.38 -0.02 0.83 16 32 H 0.06 1.08 7.76 -2.39 -0.02 1.06 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 0.73 6.09 -2.39 -0.01 0.71 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 0.85 7.66 -2.39 -0.02 0.84 16 37 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 1.03 8.03 -2.38 -0.02 1.01 16 40 H 0.12 0.65 6.43 -2.39 -0.02 0.63 16 41 H 0.08 2.34 6.98 -2.39 -0.02 2.33 16 42 H 0.08 2.02 7.49 -2.39 -0.02 2.00 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 2.13 8.01 -2.39 -0.02 2.11 16 45 H 0.03 1.66 7.12 -2.39 -0.02 1.64 16 46 H 0.02 0.83 8.09 -2.39 -0.02 0.81 16 47 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 48 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 49 H 0.05 1.68 7.41 -2.39 -0.02 1.66 16 50 H 0.09 1.85 8.12 -2.39 -0.02 1.83 16 51 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.12 1.14 4.31 -2.39 -0.01 1.13 16 53 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 Total: -1.00 -73.53 395.64 3.29 -70.24 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.88 Total: 13.44 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 6.59 Total: 4.44 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -4.71 Total: -108.00 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -1.50 Total: -28.23 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -73.53 3.29 -70.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035717997.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.561 kcal (2) G-P(sol) polarization free energy of solvation -73.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds