Wall clock time and date at job start Tue Mar 31 2020 19:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46906 * 2 1 4 4 C 1.53003 * 109.46876 * 120.00084 * 2 1 3 5 5 H 1.08995 * 110.33310 * 308.20795 * 4 2 1 6 6 O 1.44424 * 110.36769 * 185.95560 * 4 2 1 7 7 C 1.44429 * 105.27252 * 200.54465 * 6 4 2 8 8 C 1.54477 * 104.80287 * 40.51421 * 7 6 4 9 9 C 1.54476 * 110.46388 * 70.52241 * 4 2 1 10 10 H 1.09006 * 110.50921 * 261.49637 * 9 4 2 11 11 C 1.50701 * 110.51386 * 24.21041 * 9 4 2 12 12 O 1.21281 * 119.99847 * 59.80127 * 11 9 4 13 13 N 1.34779 * 119.99830 * 239.79557 * 11 9 4 14 14 C 1.46886 * 120.46607 * 4.92580 * 13 11 9 15 15 C 1.52860 * 109.01534 * 235.48676 * 14 13 11 16 16 C 1.52671 * 109.17683 * 307.81923 * 15 14 13 17 17 C 1.53478 * 113.62506 * 189.00025 * 16 15 14 18 18 N 1.47666 * 85.99129 * 137.70537 * 17 16 15 19 19 C 1.36937 * 134.46071 * 155.71451 * 18 17 16 20 20 H 1.07994 * 119.99915 * 179.97438 * 19 18 17 21 21 C 1.38807 * 119.99645 * 359.95135 * 19 18 17 22 22 N 1.31624 * 120.00298 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00045 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46830 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47254 * 120.00017 * 23 21 19 26 26 H 1.48501 * 109.47366 * 240.00296 * 23 21 19 27 27 C 1.47672 * 91.08329 * 335.68009 * 18 17 16 28 28 C 1.52673 * 113.18648 * 57.46182 * 16 15 14 29 29 C 1.46881 * 120.46252 * 185.20350 * 13 11 9 30 30 H 1.08990 * 109.47286 * 299.99900 * 1 2 3 31 31 H 1.08999 * 109.47013 * 59.99992 * 1 2 3 32 32 H 1.09001 * 109.47005 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47034 * 239.99937 * 2 1 3 34 34 H 1.08996 * 109.47658 * 305.31220 * 3 2 1 35 35 H 1.09004 * 109.46792 * 65.31527 * 3 2 1 36 36 H 1.09003 * 109.47136 * 185.30999 * 3 2 1 37 37 H 1.09004 * 110.37022 * 159.34313 * 7 6 4 38 38 H 1.09002 * 110.37218 * 281.57329 * 7 6 4 39 39 H 1.09001 * 110.51178 * 94.66401 * 8 7 6 40 40 H 1.09000 * 110.51345 * 217.24107 * 8 7 6 41 41 H 1.09000 * 109.58900 * 355.30874 * 14 13 11 42 42 H 1.08997 * 109.58553 * 115.74748 * 14 13 11 43 43 H 1.09002 * 109.60521 * 187.84181 * 15 14 13 44 44 H 1.09002 * 109.44593 * 67.69903 * 15 14 13 45 45 H 1.09001 * 113.78738 * 251.97519 * 17 16 15 46 46 H 1.08997 * 113.79281 * 23.43213 * 17 16 15 47 47 H 0.96998 * 119.99748 * 180.02562 * 22 21 19 48 48 H 1.08996 * 113.78756 * 270.04777 * 27 18 17 49 49 H 1.09001 * 113.78929 * 138.58246 * 27 18 17 50 50 H 1.08997 * 109.53446 * 182.52207 * 28 16 15 51 51 H 1.08999 * 109.59277 * 62.33442 * 28 16 15 52 52 H 1.09002 * 109.58539 * 244.25638 * 29 13 11 53 53 H 1.08999 * 109.58942 * 4.53905 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5702 -0.3097 2.1425 6 8 3.4771 -0.6122 1.3412 7 6 3.8854 -1.6888 2.2131 8 6 3.0070 -2.8891 1.7961 9 6 1.7650 -2.2379 1.1473 10 1 0.8632 -2.5006 1.7005 11 6 1.6420 -2.6566 -0.2952 12 8 2.5699 -2.4860 -1.0573 13 7 0.5009 -3.2206 -0.7382 14 6 -0.6662 -3.3340 0.1465 15 6 -1.1002 -4.7982 0.2130 16 6 -1.2771 -5.3338 -1.2057 17 6 -1.9207 -6.7260 -1.2617 18 7 -2.7135 -6.2002 -2.3911 19 6 -3.3516 -6.7679 -3.4615 20 1 -3.8794 -6.1447 -4.1682 21 6 -3.3197 -8.1443 -3.6383 22 7 -2.6766 -8.9038 -2.7769 23 14 -4.1908 -8.9189 -5.0980 24 1 -4.8352 -7.8561 -5.9108 25 1 -3.2038 -9.6498 -5.9327 26 1 -5.2256 -9.8664 -4.6113 27 6 -2.5430 -4.8169 -1.9033 28 6 -0.0161 -5.2082 -2.0572 29 6 0.4089 -3.7359 -2.1106 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6011 1.9831 -0.8385 35 1 1.7564 1.9281 0.9338 36 1 3.1258 1.4440 -0.0951 37 1 4.9400 -1.9199 2.0625 38 1 3.7004 -1.4247 3.2544 39 1 3.5320 -3.5138 1.0734 40 1 2.7212 -3.4751 2.6696 41 1 -0.4025 -2.9870 1.1455 42 1 -1.4839 -2.7311 -0.2483 43 1 -2.0443 -4.8756 0.7522 44 1 -0.3367 -5.3799 0.7296 45 1 -1.2282 -7.5196 -1.5423 46 1 -2.5166 -6.9706 -0.3824 47 1 -2.6540 -9.8656 -2.9008 48 1 -3.3239 -4.4941 -1.2148 49 1 -2.3450 -4.0931 -2.6939 50 1 -0.2209 -5.5651 -3.0665 51 1 0.7838 -5.8025 -1.6157 52 1 -0.3315 -3.1617 -2.6676 53 1 1.3798 -3.6510 -2.5987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035717998.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:24 Heat of formation + Delta-G solvation = -43.944326 kcal Electronic energy + Delta-G solvation = -31619.191157 eV Core-core repulsion = 27684.779381 eV Total energy + Delta-G solvation = -3934.411776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.13330 -40.83115 -39.23783 -37.05463 -36.00809 -34.43438 -33.53177 -32.08967 -31.89669 -29.48201 -28.59421 -27.94556 -26.73663 -25.47292 -24.87475 -23.95494 -23.14457 -22.47138 -21.50088 -20.17503 -18.87608 -18.69125 -18.18119 -17.47584 -16.99854 -16.87201 -16.58322 -16.21945 -16.12244 -15.86489 -15.58640 -15.12488 -14.89277 -14.64954 -14.35241 -14.26802 -14.01411 -13.92596 -13.74867 -13.63669 -13.22596 -13.10184 -12.92969 -12.91370 -12.85141 -12.67623 -12.53020 -12.50477 -12.17542 -12.13834 -12.04168 -11.77817 -11.65957 -11.57554 -11.52264 -11.43762 -11.18472 -10.99665 -10.81184 -10.69442 -10.44046 -9.55413 -8.85814 -7.88694 -5.20077 1.43926 1.44485 1.54370 1.60783 2.00685 2.47815 2.94600 3.32160 3.36024 3.43585 3.59623 3.64623 3.71886 3.84503 3.99520 4.07806 4.08843 4.17266 4.21112 4.28166 4.31541 4.37059 4.40928 4.46951 4.66179 4.68403 4.70649 4.76749 4.78366 4.80736 4.85066 4.87828 4.91350 4.92476 4.97031 5.00904 5.04592 5.08846 5.10136 5.15855 5.23316 5.27345 5.30941 5.36219 5.44773 5.45369 5.56714 5.61742 5.78327 5.97613 5.98600 6.48595 6.95481 7.22793 7.64303 8.61419 9.28110 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024748 B = 0.002733 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.144688 B =10241.888367 C =10596.582636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.100 3.900 5 H 0.106 0.894 6 O -0.389 6.389 7 C 0.044 3.956 8 C -0.138 4.138 9 C -0.147 4.147 10 H 0.139 0.861 11 C 0.528 3.472 12 O -0.580 6.580 13 N -0.601 5.601 14 C 0.104 3.896 15 C -0.113 4.113 16 C -0.080 4.080 17 C 0.168 3.832 18 N -0.640 5.640 19 C -0.227 4.227 20 H 0.080 0.920 21 C -0.069 4.069 22 N -0.953 5.953 23 Si 0.972 3.028 24 H -0.266 1.266 25 H -0.295 1.295 26 H -0.293 1.293 27 C 0.130 3.870 28 C -0.088 4.088 29 C 0.126 3.874 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.031 0.969 46 H 0.018 0.982 47 H 0.246 0.754 48 H 0.053 0.947 49 H 0.047 0.953 50 H 0.051 0.949 51 H 0.053 0.947 52 H 0.073 0.927 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.732 18.865 15.403 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.191 4.191 4 C 0.043 3.957 5 H 0.124 0.876 6 O -0.309 6.309 7 C -0.033 4.033 8 C -0.176 4.176 9 C -0.168 4.168 10 H 0.156 0.844 11 C 0.318 3.682 12 O -0.461 6.461 13 N -0.333 5.333 14 C -0.017 4.017 15 C -0.152 4.152 16 C -0.082 4.082 17 C 0.042 3.958 18 N -0.366 5.366 19 C -0.356 4.356 20 H 0.098 0.902 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.801 3.199 24 H -0.190 1.190 25 H -0.222 1.222 26 H -0.220 1.220 27 C 0.005 3.995 28 C -0.126 4.126 29 C 0.003 3.997 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.036 0.964 47 H 0.055 0.945 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.072 0.928 52 H 0.091 0.909 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.224 18.892 14.667 25.292 hybrid contribution -0.572 -1.570 -1.302 2.118 sum 7.652 17.322 13.366 23.179 Atomic orbital electron populations 1.21937 0.92717 1.02917 1.03103 1.21428 0.97085 0.97311 0.97215 1.21633 1.00439 0.94815 1.02170 1.23053 0.82116 0.91540 0.99031 0.87630 1.89157 1.21297 1.51437 1.68978 1.23548 0.99730 0.85205 0.94779 1.22933 0.94204 0.98958 1.01511 1.23070 1.02939 0.98122 0.92666 0.84361 1.20698 0.81129 0.75925 0.90435 1.90678 1.40263 1.56498 1.58618 1.48202 1.13367 1.58407 1.13367 1.22057 0.87482 0.96645 0.95504 1.21732 1.02871 0.95944 0.94620 1.22076 0.93935 0.96413 0.95738 1.22178 0.91325 0.94112 0.88145 1.46339 1.61848 1.03707 1.24727 1.19423 1.25157 0.90662 1.00349 0.90203 1.25541 1.02431 0.96584 1.01582 1.70014 1.48136 1.03637 1.38479 0.85095 0.77514 0.78307 0.78961 1.19033 1.22231 1.22030 1.22780 0.94115 0.87223 0.95343 1.21330 0.95874 0.95827 0.99581 1.21379 1.01658 0.93288 0.83381 0.90197 0.92537 0.91861 0.92464 0.92633 0.91325 0.93963 0.89227 0.89354 0.92601 0.86698 0.86175 0.89489 0.89001 0.91168 0.95060 0.96408 0.94526 0.92978 0.93464 0.93038 0.92837 0.90909 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.96 71.98 0.65 -1.56 16 2 C -0.11 -2.22 2.26 -10.79 -0.02 -2.24 16 3 C -0.13 -2.45 8.91 71.98 0.64 -1.81 16 4 C 0.10 1.74 2.66 31.10 0.08 1.82 16 5 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 6 O -0.39 -8.65 10.60 -148.98 -1.58 -10.23 16 7 C 0.04 0.68 7.63 72.48 0.55 1.23 16 8 C -0.14 -2.20 6.64 31.61 0.21 -1.99 16 9 C -0.15 -2.48 2.66 -10.52 -0.03 -2.50 16 10 H 0.14 1.36 5.20 -2.38 -0.01 1.35 16 11 C 0.53 13.22 4.21 87.66 0.37 13.59 16 12 O -0.58 -19.98 14.55 -3.03 -0.04 -20.02 16 13 N -0.60 -14.01 2.64 -819.48 -2.17 -16.17 16 14 C 0.10 1.76 4.45 86.26 0.38 2.15 16 15 C -0.11 -2.54 5.24 30.44 0.16 -2.38 16 16 C -0.08 -2.67 0.77 -52.04 -0.04 -2.71 16 17 C 0.17 7.69 6.64 86.31 0.57 8.26 16 18 N -0.64 -31.88 3.53 -722.67 -2.55 -34.44 16 19 C -0.23 -12.70 10.70 84.03 0.90 -11.80 16 20 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 22 N -0.95 -57.86 11.39 21.65 0.25 -57.61 16 23 Si 0.97 46.24 29.55 68.60 2.03 48.26 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 27 C 0.13 4.77 7.72 86.32 0.67 5.43 16 28 C -0.09 -2.98 5.22 30.60 0.16 -2.82 16 29 C 0.13 3.61 6.29 86.42 0.54 4.16 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.91 4.06 -2.39 -0.01 0.90 16 33 H 0.06 1.60 5.42 -2.39 -0.01 1.59 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.04 0.92 7.76 -2.39 -0.02 0.91 16 37 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 1.22 7.55 -2.39 -0.02 1.20 16 40 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.12 1.18 5.02 -2.39 -0.01 1.17 16 42 H 0.09 1.33 7.57 -2.39 -0.02 1.31 16 43 H 0.09 1.86 8.12 -2.39 -0.02 1.84 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.03 1.67 7.12 -2.39 -0.02 1.65 16 46 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 47 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 48 H 0.05 1.74 8.07 -2.39 -0.02 1.72 16 49 H 0.05 1.67 7.41 -2.39 -0.02 1.66 16 50 H 0.05 2.10 8.01 -2.39 -0.02 2.08 16 51 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 52 H 0.07 2.01 7.49 -2.39 -0.02 1.99 16 53 H 0.07 2.32 7.00 -2.39 -0.02 2.31 16 Total: -1.00 -75.73 391.48 3.08 -72.65 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.88 Total: 14.19 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 6.26 Total: 3.37 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -4.47 Total: -108.22 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.62 Total: -30.25 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -75.73 3.08 -72.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035717998.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.709 kcal (2) G-P(sol) polarization free energy of solvation -75.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds