Wall clock time and date at job start Tue Mar 31 2020 19:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47524 * 2 1 4 4 C 1.53002 * 109.47289 * 120.00682 * 2 1 3 5 5 H 1.08997 * 110.44021 * 46.70365 * 4 2 1 6 6 C 1.54819 * 110.59837 * 284.08723 * 4 2 1 7 7 C 1.54993 * 102.09089 * 220.39026 * 6 4 2 8 8 O 1.44379 * 103.49146 * 37.02170 * 7 6 4 9 9 C 1.43740 * 106.97489 * 319.93930 * 8 7 6 10 10 H 1.09004 * 110.00502 * 267.01751 * 9 8 7 11 11 C 1.50696 * 109.87797 * 145.94304 * 9 8 7 12 12 O 1.21284 * 119.99842 * 350.94439 * 11 9 8 13 13 N 1.34776 * 120.00388 * 170.95150 * 11 9 8 14 14 C 1.46946 * 120.44691 * 174.78700 * 13 11 9 15 15 C 1.53589 * 108.52468 * 125.71251 * 14 13 11 16 16 H 1.09003 * 110.59842 * 172.17505 * 15 14 13 17 17 C 1.53365 * 109.20108 * 294.10576 * 15 14 13 18 18 C 1.54664 * 108.58722 * 60.06273 * 17 15 14 19 19 C 1.53015 * 109.72219 * 60.84962 * 18 17 15 20 20 C 1.53367 * 109.24879 * 299.33446 * 19 18 17 21 21 H 1.08994 * 111.08698 * 177.85076 * 20 19 18 22 22 C 1.46953 * 120.44214 * 354.75791 * 13 11 9 23 23 N 1.47565 * 107.98223 * 56.39534 * 20 19 18 24 24 C 1.36932 * 121.61283 * 122.27252 * 23 20 19 25 25 H 1.08002 * 120.00423 * 149.05449 * 24 23 20 26 26 C 1.38814 * 119.99847 * 329.05981 * 24 23 20 27 27 N 1.31614 * 119.99815 * 341.75313 * 26 24 23 28 28 Si 1.86797 * 119.99977 * 161.74777 * 26 24 23 29 29 H 1.48501 * 109.47027 * 89.99844 * 28 26 24 30 30 H 1.48498 * 109.47166 * 209.99884 * 28 26 24 31 31 H 1.48501 * 109.47196 * 330.00285 * 28 26 24 32 32 H 1.09005 * 109.47318 * 304.97695 * 1 2 3 33 33 H 1.08997 * 109.47289 * 64.97597 * 1 2 3 34 34 H 1.09005 * 109.47614 * 184.98013 * 1 2 3 35 35 H 1.09008 * 109.46924 * 240.00038 * 2 1 3 36 36 H 1.09005 * 109.46602 * 42.75441 * 3 2 1 37 37 H 1.09000 * 109.47054 * 162.75218 * 3 2 1 38 38 H 1.08995 * 109.47151 * 282.75870 * 3 2 1 39 39 H 1.09007 * 110.90146 * 338.58516 * 6 4 2 40 40 H 1.08997 * 110.90997 * 102.18393 * 6 4 2 41 41 H 1.08998 * 110.61522 * 155.52655 * 7 6 4 42 42 H 1.08998 * 110.61453 * 278.35947 * 7 6 4 43 43 H 1.08993 * 109.63063 * 6.00045 * 14 13 11 44 44 H 1.09005 * 109.78525 * 245.52042 * 14 13 11 45 45 H 1.09001 * 109.50434 * 180.52195 * 17 15 14 46 46 H 1.09003 * 109.50141 * 300.63906 * 17 15 14 47 47 H 1.09005 * 109.52095 * 300.73160 * 18 17 15 48 48 H 1.09004 * 109.33854 * 180.85551 * 18 17 15 49 49 H 1.09004 * 109.50522 * 179.40236 * 19 18 17 50 50 H 1.08999 * 109.50699 * 59.26741 * 19 18 17 51 51 H 1.08999 * 109.61991 * 353.98061 * 22 13 11 52 52 H 1.08995 * 109.62048 * 114.53856 * 22 13 11 53 53 H 0.96995 * 120.00533 * 2.10542 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.5065 -1.6614 1.3904 6 6 1.8890 0.1802 2.4986 7 6 3.2088 -0.0990 3.2619 8 8 4.1855 -0.2349 2.2073 9 6 3.5568 -0.9723 1.1456 10 1 3.7649 -2.0365 1.2566 11 6 4.0667 -0.4871 -0.1870 12 8 4.7596 0.5065 -0.2458 13 7 3.7526 -1.1573 -1.3133 14 6 4.1476 -0.6314 -2.6274 15 6 4.9348 -1.7198 -3.3721 16 1 5.1260 -1.4180 -4.4019 17 6 6.2528 -1.9835 -2.6335 18 6 5.9271 -2.4557 -1.1972 19 6 5.1157 -3.7519 -1.2513 20 6 3.8021 -3.4952 -2.0000 21 1 3.2163 -4.4100 -2.0892 22 6 3.0112 -2.4242 -1.2437 23 7 4.1353 -2.9597 -3.3341 24 6 3.7179 -3.5799 -4.4813 25 1 3.5135 -2.9966 -5.3670 26 6 3.5573 -4.9585 -4.5059 27 7 4.1296 -5.7042 -3.5847 28 14 2.5290 -5.7552 -5.8465 29 1 3.3966 -6.0847 -7.0059 30 1 1.9100 -6.9990 -5.3222 31 1 1.4631 -4.8153 -6.2773 32 1 -0.3634 0.5891 0.8421 33 1 -0.3634 0.4347 -0.9312 34 1 -0.3634 -1.0238 0.0892 35 1 1.8933 -0.5139 -0.8901 36 1 1.4497 2.0365 0.6977 37 1 3.0865 1.4578 0.3047 38 1 1.9472 1.8607 -1.0022 39 1 1.8187 1.2302 2.2143 40 1 1.0254 -0.1192 3.0924 41 1 3.4604 0.7385 3.9125 42 1 3.1313 -1.0212 3.8378 43 1 4.7758 0.2494 -2.4955 44 1 3.2593 -0.3651 -3.2003 45 1 6.8200 -2.7490 -3.1632 46 1 6.8355 -1.0634 -2.5892 47 1 5.3490 -1.6875 -0.6835 48 1 6.8566 -2.6324 -0.6558 49 1 4.8973 -4.0871 -0.2373 50 1 5.6885 -4.5184 -1.7733 51 1 2.8927 -2.7222 -0.2019 52 1 2.0318 -2.3009 -1.7057 53 1 4.6381 -5.2884 -2.8710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039593484.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:15 Heat of formation + Delta-G solvation = -30.433015 kcal Electronic energy + Delta-G solvation = -33818.711102 eV Core-core repulsion = 29884.885220 eV Total energy + Delta-G solvation = -3933.825882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.87333 -40.74891 -38.88579 -36.88374 -35.79212 -34.58880 -33.80647 -31.98273 -31.57027 -30.74831 -28.29222 -28.09152 -27.26044 -25.59052 -24.42575 -23.62524 -23.15894 -22.83823 -21.27580 -20.58302 -20.05572 -18.80196 -18.05657 -17.56501 -17.41313 -16.68648 -16.23462 -16.08616 -15.83379 -15.71635 -15.61964 -15.47642 -15.04513 -14.62484 -14.51424 -14.31862 -14.15359 -14.00053 -13.78983 -13.75412 -13.26456 -13.23960 -12.92196 -12.75680 -12.73793 -12.55935 -12.47040 -12.37940 -12.09634 -11.99748 -11.92921 -11.92629 -11.71932 -11.56034 -11.42132 -11.33495 -11.20054 -11.07255 -10.98006 -10.47688 -10.35462 -9.51139 -8.60588 -8.16206 -5.36996 1.50483 1.62300 1.69160 1.79365 1.86093 2.67006 2.94547 3.28097 3.31220 3.37185 3.46878 3.65040 3.90402 3.95578 4.03018 4.04756 4.08032 4.10718 4.20312 4.26177 4.27906 4.31433 4.35472 4.39925 4.53429 4.60413 4.66169 4.68535 4.72106 4.76415 4.78427 4.80330 4.82941 4.86523 4.89394 4.92873 5.04769 5.05583 5.10349 5.16209 5.19684 5.22238 5.27939 5.30233 5.44102 5.44550 5.48690 5.54899 5.83257 5.90559 6.38927 6.55450 7.10692 7.12942 7.81021 8.30969 9.15566 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.004513 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.981138 B = 6202.712872 C = 6709.772044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C -0.159 4.159 4 C -0.102 4.102 5 H 0.114 0.886 6 C -0.146 4.146 7 C 0.036 3.964 8 O -0.379 6.379 9 C 0.058 3.942 10 H 0.098 0.902 11 C 0.530 3.470 12 O -0.563 6.563 13 N -0.585 5.585 14 C 0.115 3.885 15 C 0.150 3.850 16 H 0.069 0.931 17 C -0.119 4.119 18 C -0.133 4.133 19 C -0.120 4.120 20 C 0.153 3.847 21 H 0.076 0.924 22 C 0.105 3.895 23 N -0.600 5.600 24 C -0.348 4.348 25 H 0.049 0.951 26 C -0.068 4.068 27 N -0.961 5.961 28 Si 1.119 2.881 29 H -0.292 1.292 30 H -0.291 1.291 31 H -0.276 1.276 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.037 0.963 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.033 0.967 46 H 0.059 0.941 47 H 0.092 0.908 48 H 0.039 0.961 49 H 0.069 0.931 50 H 0.033 0.967 51 H 0.102 0.898 52 H 0.073 0.927 53 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 10.017 13.218 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C -0.216 4.216 4 C -0.120 4.120 5 H 0.132 0.868 6 C -0.184 4.184 7 C -0.039 4.039 8 O -0.298 6.298 9 C -0.003 4.003 10 H 0.116 0.884 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.319 5.319 14 C -0.009 4.009 15 C 0.043 3.957 16 H 0.088 0.912 17 C -0.158 4.158 18 C -0.171 4.171 19 C -0.160 4.160 20 C 0.046 3.954 21 H 0.094 0.906 22 C -0.018 4.018 23 N -0.323 5.323 24 C -0.478 4.478 25 H 0.066 0.934 26 C -0.265 4.265 27 N -0.606 5.606 28 Si 0.944 3.056 29 H -0.219 1.219 30 H -0.217 1.217 31 H -0.201 1.201 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.051 0.949 46 H 0.077 0.923 47 H 0.109 0.891 48 H 0.058 0.942 49 H 0.088 0.912 50 H 0.052 0.948 51 H 0.120 0.880 52 H 0.091 0.909 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.280 9.179 12.546 17.613 hybrid contribution 1.114 1.036 -0.015 1.522 sum -7.165 10.215 12.531 17.684 Atomic orbital electron populations 1.21760 0.93051 1.02485 1.01969 1.21571 0.97692 0.96247 0.97847 1.22183 1.02191 0.96335 1.00886 1.22649 0.91279 1.01420 0.96687 0.86755 1.23355 0.99012 1.01024 0.94964 1.23882 0.87137 1.02861 0.90046 1.88962 1.37593 1.76092 1.27165 1.22876 0.94681 0.96765 0.85986 0.88410 1.20343 0.78832 0.82746 0.85930 1.90647 1.39069 1.27675 1.86903 1.48083 1.55224 1.23056 1.05549 1.21930 0.99268 0.96668 0.83041 1.21315 0.89937 0.87408 0.97062 0.91244 1.22139 0.97757 0.99415 0.96482 1.22353 0.99319 0.98619 0.96789 1.21972 0.97784 0.96802 0.99426 1.21147 0.93939 0.95671 0.84671 0.90649 1.22314 0.94981 0.82967 1.01579 1.44531 1.59578 1.26970 1.01264 1.20154 1.43491 0.92001 0.92151 0.93352 1.27058 1.00788 0.93705 1.04919 1.70849 1.33648 1.38648 1.17476 0.82773 0.75015 0.74953 0.72816 1.21878 1.21670 1.20119 0.91438 0.93269 0.91707 0.90390 0.91349 0.92336 0.94402 0.89993 0.87089 0.87710 0.90099 0.89857 0.91568 0.94854 0.92252 0.89064 0.94177 0.91247 0.94813 0.88020 0.90872 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.02 71.98 0.65 -1.66 16 2 C -0.11 -2.49 2.13 -10.80 -0.02 -2.51 16 3 C -0.16 -3.91 7.47 71.98 0.54 -3.37 16 4 C -0.10 -1.93 2.08 -9.80 -0.02 -1.95 16 5 H 0.11 1.68 8.05 -2.39 -0.02 1.66 16 6 C -0.15 -2.21 6.18 31.90 0.20 -2.01 16 7 C 0.04 0.63 7.72 72.66 0.56 1.19 16 8 O -0.38 -10.60 10.75 -130.41 -1.40 -12.00 16 9 C 0.06 1.50 2.68 30.22 0.08 1.58 16 10 H 0.10 2.36 6.91 -2.38 -0.02 2.34 16 11 C 0.53 17.09 1.77 87.66 0.16 17.25 16 12 O -0.56 -22.00 14.01 15.53 0.22 -21.78 16 13 N -0.59 -18.91 0.42 -818.16 -0.34 -19.25 16 14 C 0.12 4.08 5.91 86.49 0.51 4.59 16 15 C 0.15 6.13 3.58 45.11 0.16 6.29 16 16 H 0.07 2.90 8.01 -2.39 -0.02 2.89 16 17 C -0.12 -4.76 5.72 31.28 0.18 -4.58 16 18 C -0.13 -5.06 5.60 31.17 0.17 -4.89 16 19 C -0.12 -4.80 5.19 30.72 0.16 -4.64 16 20 C 0.15 6.34 2.41 44.95 0.11 6.45 16 21 H 0.08 3.62 6.04 -2.39 -0.01 3.60 16 22 C 0.11 3.35 4.28 86.33 0.37 3.72 16 23 N -0.60 -27.83 2.40 -646.54 -1.55 -29.39 16 24 C -0.35 -18.39 9.67 84.03 0.81 -17.58 16 25 H 0.05 2.59 7.89 -2.91 -0.02 2.56 16 26 C -0.07 -3.66 4.94 84.86 0.42 -3.24 16 27 N -0.96 -55.46 12.61 21.65 0.27 -55.19 16 28 Si 1.12 49.11 29.96 68.60 2.06 51.17 16 29 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 30 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 31 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 32 H 0.07 0.94 7.88 -2.38 -0.02 0.92 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.00 8.11 -2.38 -0.02 0.98 16 35 H 0.08 2.05 3.70 -2.38 -0.01 2.04 16 36 H 0.07 1.39 6.59 -2.38 -0.02 1.37 16 37 H 0.06 1.79 4.64 -2.39 -0.01 1.78 16 38 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.37 5.38 -2.38 -0.01 1.36 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 2.97 6.98 -2.39 -0.02 2.95 16 44 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.09 3.35 2.49 -3.41 -0.01 3.34 16 48 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 50 H 0.03 1.58 6.43 -2.39 -0.02 1.56 16 51 H 0.10 2.61 5.31 -2.39 -0.01 2.59 16 52 H 0.07 2.33 7.52 -2.39 -0.02 2.31 16 53 H 0.27 15.49 3.90 -92.71 -0.36 15.13 16 Total: -1.00 -67.32 365.06 5.60 -61.73 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 1.32 Total: 30.07 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.03 Total: -5.35 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -1.62 Total: -103.83 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -1.18 Total: -33.78 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.06 Total: 51.17 kcal Total: -67.32 5.60 -61.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039593484.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.293 kcal (2) G-P(sol) polarization free energy of solvation -67.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds