Wall clock time and date at job start Tue Mar 31 2020 19:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47383 * 2 1 4 4 C 1.52996 * 109.47019 * 120.00372 * 2 1 3 5 5 H 1.09002 * 109.99515 * 53.30297 * 4 2 1 6 6 O 1.44051 * 109.92760 * 292.04948 * 4 2 1 7 7 C 1.44375 * 106.98559 * 214.02627 * 6 4 2 8 8 C 1.55001 * 103.49008 * 40.13587 * 7 6 4 9 9 C 1.54104 * 109.87812 * 174.38591 * 4 2 1 10 10 H 1.09000 * 110.48448 * 240.26182 * 9 4 2 11 11 C 1.50701 * 110.48642 * 2.77260 * 9 4 2 12 12 O 1.21281 * 120.00234 * 336.15374 * 11 9 4 13 13 N 1.34778 * 119.99652 * 156.14998 * 11 9 4 14 14 C 1.46946 * 120.44363 * 3.01742 * 13 11 9 15 15 C 1.53594 * 108.53125 * 125.72786 * 14 13 11 16 16 H 1.08994 * 110.59867 * 172.76987 * 15 14 13 17 17 C 1.53365 * 108.68957 * 294.36740 * 15 14 13 18 18 C 1.53005 * 109.27697 * 60.30465 * 17 15 14 19 19 C 1.53008 * 109.80085 * 60.56029 * 18 17 15 20 20 C 1.53365 * 109.25119 * 299.42161 * 19 18 17 21 21 H 1.09003 * 110.59724 * 178.14691 * 20 19 18 22 22 C 1.46938 * 120.44103 * 182.99069 * 13 11 9 23 23 N 1.47572 * 107.76468 * 51.15162 * 15 14 13 24 24 C 1.36932 * 121.61270 * 120.45439 * 23 15 14 25 25 H 1.08001 * 119.99861 * 27.53461 * 24 23 15 26 26 C 1.38813 * 120.00235 * 207.53931 * 24 23 15 27 27 N 1.31620 * 120.00191 * 15.25533 * 26 24 23 28 28 Si 1.86806 * 120.00066 * 195.25903 * 26 24 23 29 29 H 1.48495 * 109.47002 * 89.99805 * 28 26 24 30 30 H 1.48496 * 109.47119 * 209.99649 * 28 26 24 31 31 H 1.48495 * 109.46868 * 329.99797 * 28 26 24 32 32 H 1.09006 * 109.46622 * 300.00349 * 1 2 3 33 33 H 1.09001 * 109.46958 * 59.99868 * 1 2 3 34 34 H 1.08996 * 109.47276 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.46901 * 239.99903 * 2 1 3 36 36 H 1.09001 * 109.46976 * 40.97766 * 3 2 1 37 37 H 1.08996 * 109.47049 * 160.98160 * 3 2 1 38 38 H 1.09005 * 109.47143 * 280.98243 * 3 2 1 39 39 H 1.09003 * 110.61959 * 281.64167 * 7 6 4 40 40 H 1.09000 * 110.62323 * 158.63742 * 7 6 4 41 41 H 1.08994 * 110.90701 * 204.77693 * 8 7 6 42 42 H 1.08999 * 110.93433 * 81.18790 * 8 7 6 43 43 H 1.08996 * 109.62929 * 245.44582 * 14 13 11 44 44 H 1.09005 * 109.62623 * 5.82665 * 14 13 11 45 45 H 1.08999 * 109.50387 * 180.24254 * 17 15 14 46 46 H 1.08999 * 109.50216 * 300.36381 * 17 15 14 47 47 H 1.09000 * 109.41556 * 180.65799 * 18 17 15 48 48 H 1.09001 * 109.41502 * 300.52624 * 18 17 15 49 49 H 1.08999 * 109.50804 * 59.35972 * 19 18 17 50 50 H 1.09000 * 109.50847 * 179.44547 * 19 18 17 51 51 H 1.08999 * 109.62338 * 353.97229 * 22 13 11 52 52 H 1.09003 * 109.62524 * 114.52810 * 22 13 11 53 53 H 0.97000 * 120.00223 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5871 -1.7103 1.3195 6 8 1.7243 0.0495 2.4245 7 6 2.8037 -0.1502 3.3622 8 6 4.0689 -0.1293 2.4671 9 6 3.5744 -0.8507 1.1898 10 1 3.8696 -1.8999 1.2057 11 6 4.1138 -0.1710 -0.0423 12 8 3.3992 -0.0122 -1.0093 13 7 5.3903 0.2606 -0.0696 14 6 6.2839 0.0148 1.0707 15 6 7.5471 -0.6922 0.5576 16 1 8.2886 -0.7772 1.3519 17 6 7.1555 -2.0797 0.0343 18 6 6.1512 -1.9233 -1.1093 19 6 6.7844 -1.1230 -2.2493 20 6 7.1738 0.2684 -1.7350 21 1 7.6575 0.8467 -2.5222 22 6 5.9072 0.9825 -1.2404 23 7 8.0720 0.0913 -0.5775 24 6 9.3314 0.6284 -0.5575 25 1 10.1083 0.1616 0.0298 26 6 9.6096 1.7730 -1.2920 27 7 8.6248 2.5106 -1.7594 28 14 11.3817 2.2664 -1.6173 29 1 11.8451 1.6420 -2.8824 30 1 11.4709 3.7441 -1.7330 31 1 12.2378 1.8051 -0.4951 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.4297 2.0436 0.6739 37 1 3.0772 1.4611 0.3349 38 1 1.9766 1.8503 -1.0089 39 1 2.7039 -1.1132 3.8631 40 1 2.8350 0.6607 4.0900 41 1 4.8849 -0.6806 2.9341 42 1 4.3710 0.8939 2.2436 43 1 6.5573 0.9634 1.5327 44 1 5.7790 -0.6165 1.8020 45 1 8.0441 -2.5955 -0.3297 46 1 6.7027 -2.6579 0.8398 47 1 5.8624 -2.9086 -1.4752 48 1 5.2677 -1.3982 -0.7464 49 1 7.6741 -1.6409 -2.6073 50 1 6.0685 -1.0229 -3.0652 51 1 5.1561 0.9845 -2.0302 52 1 6.1505 2.0075 -0.9604 53 1 8.8192 3.3102 -2.2730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039627255.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:10 Heat of formation + Delta-G solvation = 12.223646 kcal Electronic energy + Delta-G solvation = -33639.798161 eV Core-core repulsion = 29707.822011 eV Total energy + Delta-G solvation = -3931.976150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.86502 -40.61241 -38.91469 -36.30405 -34.98310 -34.52826 -33.84052 -32.78741 -31.92300 -29.66649 -28.43856 -27.95955 -27.16195 -25.65149 -24.47315 -23.37947 -22.78110 -22.70327 -21.14211 -20.61551 -19.90506 -18.88667 -17.71627 -17.35101 -16.84672 -16.56617 -16.42175 -16.22959 -15.80403 -15.67863 -15.44436 -15.10044 -14.88018 -14.50889 -14.40858 -14.12125 -14.09126 -13.93319 -13.74480 -13.34398 -13.12624 -13.09312 -12.92430 -12.83756 -12.69357 -12.59927 -12.43895 -12.30158 -12.14306 -12.02751 -11.91527 -11.70511 -11.61827 -11.47708 -11.39022 -11.18645 -11.02374 -10.91183 -10.58880 -10.49528 -9.58526 -9.31129 -8.40275 -7.82018 -5.26293 1.46863 1.50015 1.56360 1.67669 2.13013 2.52996 2.98134 3.32434 3.45090 3.48518 3.54263 3.88663 4.05384 4.10995 4.22003 4.24163 4.25013 4.27906 4.28172 4.32871 4.43264 4.47910 4.58230 4.58878 4.70112 4.80070 4.81852 4.83524 4.88921 4.89288 4.92225 4.96206 5.01088 5.02844 5.09910 5.12300 5.13899 5.16157 5.21904 5.27404 5.34805 5.40440 5.45487 5.51663 5.54552 5.64876 5.71312 5.74632 5.94149 6.07723 6.41886 6.68904 7.17463 7.36884 7.86941 8.44366 9.22042 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019264 B = 0.004020 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.174122 B = 6963.603862 C = 7107.070369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.100 4.100 4 C 0.101 3.899 5 H 0.092 0.908 6 O -0.389 6.389 7 C 0.044 3.956 8 C -0.151 4.151 9 C -0.140 4.140 10 H 0.139 0.861 11 C 0.519 3.481 12 O -0.558 6.558 13 N -0.586 5.586 14 C 0.081 3.919 15 C 0.141 3.859 16 H 0.084 0.916 17 C -0.115 4.115 18 C -0.135 4.135 19 C -0.125 4.125 20 C 0.178 3.822 21 H 0.074 0.926 22 C 0.129 3.871 23 N -0.594 5.594 24 C -0.251 4.251 25 H 0.067 0.933 26 C -0.044 4.044 27 N -0.925 5.925 28 Si 0.958 3.042 29 H -0.293 1.293 30 H -0.300 1.300 31 H -0.270 1.270 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.027 0.973 37 H 0.031 0.969 38 H 0.029 0.971 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.133 0.867 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.048 0.952 48 H 0.090 0.910 49 H 0.037 0.963 50 H 0.043 0.957 51 H 0.060 0.940 52 H 0.042 0.958 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.288 -10.258 10.295 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 C -0.158 4.158 4 C 0.043 3.957 5 H 0.110 0.890 6 O -0.309 6.309 7 C -0.033 4.033 8 C -0.188 4.188 9 C -0.161 4.161 10 H 0.157 0.843 11 C 0.312 3.688 12 O -0.440 6.440 13 N -0.318 5.318 14 C -0.042 4.042 15 C 0.034 3.966 16 H 0.102 0.898 17 C -0.154 4.154 18 C -0.173 4.173 19 C -0.164 4.164 20 C 0.071 3.929 21 H 0.092 0.908 22 C 0.004 3.996 23 N -0.316 5.316 24 C -0.381 4.381 25 H 0.085 0.915 26 C -0.240 4.240 27 N -0.572 5.572 28 Si 0.788 3.212 29 H -0.221 1.221 30 H -0.227 1.227 31 H -0.195 1.195 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.144 0.856 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.150 0.850 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.066 0.934 48 H 0.108 0.892 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.079 0.921 52 H 0.060 0.940 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.769 -9.870 9.770 18.203 hybrid contribution 1.576 1.097 -0.944 2.139 sum -10.193 -8.773 8.826 16.086 Atomic orbital electron populations 1.21877 0.95820 1.01561 1.00722 1.22204 0.94650 0.96717 0.99111 1.21734 0.98618 0.96787 0.98623 1.22741 0.91240 0.95438 0.86275 0.89010 1.88948 1.44642 1.70565 1.26737 1.23774 0.84083 1.03263 0.92136 1.23597 0.99979 1.01262 0.93950 1.22820 0.97372 1.02775 0.93125 0.84336 1.20474 0.80311 0.77868 0.90126 1.90632 1.54285 1.59354 1.39694 1.48310 1.10451 1.54738 1.18312 1.23061 0.92018 1.00800 0.88348 1.21529 0.93794 0.90924 0.90314 0.89835 1.21894 0.98389 0.96870 0.98206 1.22081 1.00433 0.98820 0.95983 1.21955 0.98570 0.97954 0.97892 1.20892 0.88716 0.92527 0.90772 0.90806 1.21687 0.95615 0.94752 0.87499 1.44513 1.12957 1.60495 1.13630 1.19431 0.87326 1.04253 1.27091 0.91501 1.25593 0.99941 0.95902 1.02574 1.70079 1.30966 1.15557 1.40556 0.85397 0.81559 0.76244 0.77962 1.22092 1.22709 1.19452 0.93623 0.93578 0.91939 0.85414 0.95430 0.95010 0.95201 0.89414 0.88189 0.85647 0.91782 0.93560 0.84993 0.93760 0.89375 0.93371 0.89227 0.94370 0.93795 0.92132 0.93986 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.03 71.98 0.65 -2.76 16 2 C -0.11 -2.99 2.21 -10.80 -0.02 -3.01 16 3 C -0.10 -3.24 7.05 71.98 0.51 -2.73 16 4 C 0.10 2.27 3.11 30.97 0.10 2.36 16 5 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 6 O -0.39 -9.11 10.31 -148.98 -1.54 -10.65 16 7 C 0.04 0.70 7.72 72.67 0.56 1.26 16 8 C -0.15 -2.68 4.52 31.90 0.14 -2.54 16 9 C -0.14 -2.97 2.77 -10.55 -0.03 -3.00 16 10 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 11 C 0.52 15.73 1.96 87.66 0.17 15.91 16 12 O -0.56 -19.74 9.41 -3.03 -0.03 -19.77 16 13 N -0.59 -19.83 1.59 -817.27 -1.30 -21.13 16 14 C 0.08 2.41 4.22 86.49 0.37 2.78 16 15 C 0.14 4.85 3.61 45.11 0.16 5.01 16 16 H 0.08 2.75 8.03 -2.39 -0.02 2.73 16 17 C -0.11 -3.36 5.58 30.72 0.17 -3.19 16 18 C -0.14 -4.34 5.55 30.60 0.17 -4.17 16 19 C -0.12 -4.91 5.59 30.72 0.17 -4.74 16 20 C 0.18 8.12 2.62 45.11 0.12 8.24 16 21 H 0.07 4.00 5.86 -2.39 -0.01 3.99 16 22 C 0.13 5.55 5.83 86.49 0.50 6.06 16 23 N -0.59 -26.88 2.54 -645.68 -1.64 -28.52 16 24 C -0.25 -12.82 9.74 84.03 0.82 -12.00 16 25 H 0.07 3.34 7.87 -2.91 -0.02 3.32 16 26 C -0.04 -2.35 5.06 84.86 0.43 -1.92 16 27 N -0.93 -51.83 10.56 21.65 0.23 -51.60 16 28 Si 0.96 43.71 29.58 68.60 2.03 45.74 16 29 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 30 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 31 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 32 H 0.04 1.12 7.92 -2.38 -0.02 1.10 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.13 3.97 5.32 -78.70 -0.42 3.55 16 36 H 0.03 0.86 7.98 -2.39 -0.02 0.84 16 37 H 0.03 1.10 4.80 -2.39 -0.01 1.08 16 38 H 0.03 1.03 8.00 -2.38 -0.02 1.01 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.13 1.47 6.36 -2.39 -0.02 1.45 16 42 H 0.06 1.49 6.89 -2.39 -0.02 1.48 16 43 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 44 H 0.13 2.68 3.44 -2.38 -0.01 2.68 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 48 H 0.09 2.84 2.51 -3.47 -0.01 2.83 16 49 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.06 2.68 6.98 -2.39 -0.02 2.67 16 52 H 0.04 2.11 7.75 -2.39 -0.02 2.10 16 53 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -62.97 367.21 3.23 -59.74 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.49 Total: 24.65 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 4.99 Total: 1.55 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -2.71 Total: -101.26 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.56 Total: -30.42 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -62.97 3.23 -59.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039627255.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.962 kcal (2) G-P(sol) polarization free energy of solvation -62.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds