Wall clock time and date at job start Tue Mar 31 2020 19:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47296 * 2 1 4 4 C 1.53007 * 109.46561 * 119.99481 * 2 1 3 5 5 H 1.08996 * 110.41807 * 302.30508 * 4 2 1 6 6 O 1.44640 * 110.50966 * 64.67362 * 4 2 1 7 7 C 1.44419 * 105.36981 * 159.18213 * 6 4 2 8 8 C 1.54479 * 104.80685 * 319.56814 * 7 6 4 9 9 C 1.54488 * 110.36854 * 180.02562 * 4 2 1 10 10 H 1.08996 * 110.51326 * 335.96892 * 9 4 2 11 11 C 1.50701 * 110.51083 * 98.54553 * 9 4 2 12 12 O 1.21284 * 119.99940 * 358.09540 * 11 9 4 13 13 N 1.34780 * 119.99904 * 178.09489 * 11 9 4 14 14 C 1.46376 * 120.54654 * 359.69143 * 13 11 9 15 15 C 1.53601 * 108.62462 * 125.75314 * 14 13 11 16 16 H 1.08999 * 111.08923 * 172.53161 * 15 14 13 17 17 C 1.53372 * 108.68316 * 294.43132 * 15 14 13 18 18 C 1.53020 * 109.24878 * 60.25201 * 17 15 14 19 19 C 1.53009 * 109.79320 * 60.58134 * 18 17 15 20 20 C 1.53867 * 109.20984 * 299.30913 * 19 18 17 21 21 H 1.08999 * 110.71199 * 177.61029 * 20 19 18 22 22 C 1.46947 * 120.44008 * 179.97438 * 13 11 9 23 23 N 1.47565 * 107.76668 * 51.21186 * 15 14 13 24 24 C 1.36933 * 121.61172 * 120.51315 * 23 15 14 25 25 H 1.08006 * 119.99803 * 336.02259 * 24 23 15 26 26 C 1.38813 * 120.00343 * 156.02370 * 24 23 15 27 27 N 1.31617 * 119.99780 * 331.02696 * 26 24 23 28 28 Si 1.86799 * 119.99961 * 151.02442 * 26 24 23 29 29 H 1.48506 * 109.47405 * 0.02562 * 28 26 24 30 30 H 1.48508 * 109.47126 * 120.00114 * 28 26 24 31 31 H 1.48499 * 109.47538 * 240.00028 * 28 26 24 32 32 H 1.08999 * 109.47311 * 300.01003 * 1 2 3 33 33 H 1.09010 * 109.46673 * 60.00506 * 1 2 3 34 34 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47832 * 239.98954 * 2 1 3 36 36 H 1.09003 * 109.47032 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.46591 * 299.99549 * 3 2 1 38 38 H 1.08990 * 109.47646 * 59.99388 * 3 2 1 39 39 H 1.08992 * 110.37674 * 200.73182 * 7 6 4 40 40 H 1.09002 * 110.37254 * 78.39750 * 7 6 4 41 41 H 1.09005 * 110.50835 * 265.33227 * 8 7 6 42 42 H 1.08992 * 110.51690 * 142.62238 * 8 7 6 43 43 H 1.08994 * 109.49704 * 6.06679 * 14 13 11 44 44 H 1.09003 * 109.67763 * 245.54101 * 14 13 11 45 45 H 1.09001 * 109.50540 * 180.17745 * 17 15 14 46 46 H 1.09002 * 109.50956 * 300.27316 * 17 15 14 47 47 H 1.08997 * 109.41801 * 180.68532 * 18 17 15 48 48 H 1.09004 * 109.41309 * 300.48487 * 18 17 15 49 49 H 1.09004 * 109.50084 * 59.38200 * 19 18 17 50 50 H 1.09006 * 109.50103 * 179.49171 * 19 18 17 51 51 H 1.09004 * 109.62687 * 114.52839 * 22 13 11 52 52 H 1.08999 * 109.79091 * 354.03923 * 22 13 11 53 53 H 0.96995 * 120.00382 * 354.13047 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6519 -0.2436 2.1491 6 8 1.6623 -2.1171 1.2183 7 6 2.5744 -2.7805 2.1204 8 6 3.9443 -2.1177 1.8549 9 6 3.5845 -0.7328 1.2708 10 1 3.9813 -0.6295 0.2609 11 6 4.1086 0.3671 2.1577 12 8 3.3359 1.1265 2.7029 13 7 5.4360 0.5069 2.3451 14 6 6.3789 -0.4071 1.6983 15 6 7.4004 0.4221 0.9056 16 1 8.1988 -0.2086 0.5148 17 6 6.6705 1.1386 -0.2373 18 6 5.5986 2.0604 0.3481 19 6 6.2527 3.1066 1.2529 20 6 6.9807 2.3943 2.4063 21 1 7.4918 3.1159 3.0436 22 6 5.9576 1.5763 3.2074 23 7 7.9469 1.4500 1.8124 24 6 9.2851 1.5207 2.0937 25 1 9.9055 0.6426 1.9914 26 6 9.8443 2.7209 2.5105 27 7 9.3195 3.8626 2.1188 28 14 11.3418 2.7156 3.6272 29 1 11.7357 1.3141 3.9206 30 1 12.4652 3.4141 2.9522 31 1 11.0155 3.4145 4.8962 32 1 -0.3634 0.5140 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5140 -0.8898 36 1 3.1300 1.4424 0.0005 37 1 1.6767 1.9562 -0.8901 38 1 1.6767 1.9564 0.8898 39 1 2.6194 -3.8466 1.8985 40 1 2.2693 -2.6199 3.1545 41 1 4.5167 -2.7000 1.1327 42 1 4.5016 -2.0065 2.7849 43 1 5.8384 -1.0675 1.0204 44 1 6.8953 -0.9976 2.4551 45 1 7.3845 1.7293 -0.8113 46 1 6.2013 0.4011 -0.8885 47 1 5.0699 2.5619 -0.4625 48 1 4.8911 1.4695 0.9299 49 1 6.9674 3.6921 0.6745 50 1 5.4861 3.7659 1.6601 51 1 6.4419 1.1391 4.0806 52 1 5.1412 2.2238 3.5272 53 1 8.5963 3.8675 1.4724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039627258.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:23 Heat of formation + Delta-G solvation = -55.708430 kcal Electronic energy + Delta-G solvation = -33263.927405 eV Core-core repulsion = 29329.005500 eV Total energy + Delta-G solvation = -3934.921906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.63826 -40.65332 -38.97309 -36.23457 -35.89643 -34.57057 -33.96199 -33.09814 -31.99856 -29.55869 -28.39959 -27.98723 -27.33366 -25.57373 -24.52901 -23.36890 -23.00744 -22.85560 -21.26849 -20.62001 -20.33630 -19.04179 -17.86200 -17.46810 -17.22011 -16.69898 -16.35224 -16.19185 -16.03039 -15.68989 -15.46720 -14.93035 -14.89908 -14.60769 -14.60070 -14.46173 -14.24493 -14.07655 -13.97768 -13.72507 -13.48174 -13.23701 -12.99973 -12.81097 -12.72354 -12.54483 -12.35238 -12.27017 -12.20775 -11.98910 -11.91972 -11.89365 -11.83119 -11.68356 -11.59931 -11.52611 -11.32629 -11.11838 -10.81055 -10.62053 -10.42197 -9.59377 -8.69620 -8.19543 -5.28576 1.50072 1.60621 1.66539 1.82057 1.90272 2.66530 2.79977 3.20187 3.38431 3.44629 3.50807 3.54229 3.92186 4.01474 4.02262 4.04558 4.05659 4.08189 4.08779 4.19497 4.23731 4.34408 4.37078 4.40567 4.50124 4.63463 4.65758 4.67005 4.71601 4.76340 4.77123 4.80627 4.84036 4.86518 4.90982 4.92928 4.99068 5.00116 5.06512 5.09442 5.16915 5.19415 5.26958 5.30564 5.41005 5.42239 5.47723 5.57661 5.83187 5.88676 6.41599 6.46835 7.06351 7.08640 7.79657 8.29373 9.07341 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.003839 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.793117 B = 7292.160058 C = 7783.361469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 C -0.145 4.145 4 C 0.098 3.902 5 H 0.064 0.936 6 O -0.378 6.378 7 C 0.043 3.957 8 C -0.144 4.144 9 C -0.138 4.138 10 H 0.123 0.877 11 C 0.525 3.475 12 O -0.572 6.572 13 N -0.588 5.588 14 C 0.102 3.898 15 C 0.143 3.857 16 H 0.082 0.918 17 C -0.121 4.121 18 C -0.134 4.134 19 C -0.117 4.117 20 C 0.158 3.842 21 H 0.065 0.935 22 C 0.111 3.889 23 N -0.600 5.600 24 C -0.346 4.346 25 H 0.058 0.942 26 C -0.073 4.073 27 N -0.946 5.946 28 Si 1.108 2.892 29 H -0.272 1.272 30 H -0.298 1.298 31 H -0.293 1.293 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.044 0.956 39 H 0.121 0.879 40 H 0.055 0.945 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.071 0.929 45 H 0.030 0.970 46 H 0.085 0.915 47 H 0.045 0.955 48 H 0.099 0.901 49 H 0.030 0.970 50 H 0.044 0.956 51 H 0.059 0.941 52 H 0.077 0.923 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.741 -14.095 -4.176 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.203 4.203 4 C 0.040 3.960 5 H 0.082 0.918 6 O -0.297 6.297 7 C -0.034 4.034 8 C -0.182 4.182 9 C -0.159 4.159 10 H 0.141 0.859 11 C 0.316 3.684 12 O -0.452 6.452 13 N -0.320 5.320 14 C -0.022 4.022 15 C 0.036 3.964 16 H 0.100 0.900 17 C -0.160 4.160 18 C -0.172 4.172 19 C -0.157 4.157 20 C 0.051 3.949 21 H 0.083 0.917 22 C -0.013 4.013 23 N -0.323 5.323 24 C -0.476 4.476 25 H 0.075 0.925 26 C -0.270 4.270 27 N -0.590 5.590 28 Si 0.935 3.065 29 H -0.197 1.197 30 H -0.225 1.225 31 H -0.220 1.220 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.139 0.861 40 H 0.073 0.927 41 H 0.133 0.867 42 H 0.097 0.903 43 H 0.133 0.867 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.103 0.897 47 H 0.064 0.936 48 H 0.116 0.884 49 H 0.049 0.951 50 H 0.063 0.937 51 H 0.077 0.923 52 H 0.095 0.905 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.223 -12.873 -3.140 18.720 hybrid contribution -0.251 0.089 -0.600 0.657 sum -13.474 -12.784 -3.741 18.946 Atomic orbital electron populations 1.21734 0.93867 1.02144 1.01910 1.21109 0.97219 0.95334 0.96497 1.21870 1.00792 0.95650 1.01956 1.22922 0.90605 0.83098 0.99359 0.91847 1.89129 1.56060 1.19040 1.65470 1.23559 0.87087 0.98994 0.93721 1.23113 0.99289 0.92930 1.02879 1.22801 0.97966 0.94481 1.00657 0.85911 1.20512 0.81322 0.85291 0.81307 1.90674 1.56428 1.46610 1.51520 1.47963 1.05574 1.31201 1.47223 1.22360 0.91155 0.91435 0.97222 1.21488 0.94442 0.90805 0.89618 0.89966 1.21960 0.97378 0.98865 0.97803 1.22158 0.98770 0.97727 0.98495 1.21935 0.97897 0.97766 0.98070 1.21170 0.88760 0.91572 0.93422 0.91694 1.21919 0.96728 0.89951 0.92716 1.44644 1.02395 1.34785 1.50493 1.20193 0.85726 0.96019 1.45653 0.92468 1.26819 1.05328 0.91468 1.03368 1.70821 1.28057 1.27673 1.32401 0.82945 0.72948 0.75583 0.75015 1.19734 1.22549 1.22044 0.93507 0.91377 0.92079 0.89474 0.93438 0.91117 0.93652 0.86141 0.92671 0.86702 0.90268 0.86656 0.91052 0.95098 0.89671 0.93643 0.88351 0.95080 0.93728 0.92285 0.90488 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.10 71.98 0.65 -1.99 16 2 C -0.08 -1.73 2.60 -10.79 -0.03 -1.76 16 3 C -0.15 -3.41 8.08 71.98 0.58 -2.83 16 4 C 0.10 2.27 2.21 31.10 0.07 2.34 16 5 H 0.06 1.81 6.93 -2.39 -0.02 1.79 16 6 O -0.38 -8.18 10.94 -148.98 -1.63 -9.82 16 7 C 0.04 0.71 7.64 72.48 0.55 1.26 16 8 C -0.14 -2.37 5.08 31.62 0.16 -2.21 16 9 C -0.14 -3.00 1.35 -10.51 -0.01 -3.01 16 10 H 0.12 2.37 7.19 -2.39 -0.02 2.36 16 11 C 0.52 15.42 3.39 87.66 0.30 15.72 16 12 O -0.57 -20.56 13.80 -3.04 -0.04 -20.60 16 13 N -0.59 -18.29 1.62 -818.75 -1.33 -19.62 16 14 C 0.10 2.79 4.89 86.60 0.42 3.21 16 15 C 0.14 5.02 3.62 45.11 0.16 5.19 16 16 H 0.08 2.85 8.01 -2.39 -0.02 2.83 16 17 C -0.12 -3.98 5.59 30.73 0.17 -3.81 16 18 C -0.13 -4.62 4.75 30.60 0.15 -4.47 16 19 C -0.12 -4.96 5.36 30.89 0.17 -4.80 16 20 C 0.16 7.09 2.52 45.26 0.11 7.21 16 21 H 0.07 3.47 5.96 -2.39 -0.01 3.45 16 22 C 0.11 4.26 5.88 86.48 0.51 4.77 16 23 N -0.60 -27.26 2.42 -644.81 -1.56 -28.82 16 24 C -0.35 -18.08 9.60 84.03 0.81 -17.27 16 25 H 0.06 2.97 7.98 -2.91 -0.02 2.94 16 26 C -0.07 -3.98 4.72 84.86 0.40 -3.58 16 27 N -0.95 -56.07 12.23 21.65 0.26 -55.80 16 28 Si 1.11 49.88 30.01 68.60 2.06 51.94 16 29 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 30 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 31 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.06 1.15 7.86 -2.39 -0.02 1.13 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.21 4.49 -2.39 -0.01 1.20 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.04 1.24 7.77 -2.39 -0.02 1.22 16 39 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.11 1.29 7.79 -2.38 -0.02 1.27 16 42 H 0.08 1.41 7.31 -2.39 -0.02 1.39 16 43 H 0.12 2.25 4.82 -2.39 -0.01 2.24 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.04 1.48 7.99 -2.39 -0.02 1.46 16 48 H 0.10 3.15 1.55 -3.42 -0.01 3.15 16 49 H 0.03 1.49 6.49 -2.38 -0.02 1.47 16 50 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 51 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 52 H 0.08 3.02 7.00 -2.39 -0.02 3.00 16 53 H 0.26 15.70 5.24 -92.71 -0.49 15.22 16 Total: -1.00 -65.97 372.67 4.12 -61.85 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 1.18 Total: 26.90 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 5.17 Total: -6.03 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -2.62 Total: -104.24 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -1.67 Total: -30.42 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 2.06 Total: 51.94 kcal Total: -65.97 4.12 -61.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039627258.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.143 kcal (2) G-P(sol) polarization free energy of solvation -65.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds