Wall clock time and date at job start Tue Mar 31 2020 21:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47307 * 2 1 4 4 H 1.09004 * 109.89364 * 305.92938 * 3 2 1 5 5 C 1.54377 * 109.82847 * 185.00184 * 3 2 1 6 6 C 1.55312 * 102.25132 * 219.12820 * 5 3 2 7 7 C 1.54947 * 100.93945 * 34.13199 * 6 5 3 8 8 H 1.09000 * 110.30833 * 82.57301 * 7 6 5 9 9 C 1.50703 * 110.30874 * 204.64305 * 7 6 5 10 10 O 1.21278 * 120.00180 * 115.00400 * 9 7 6 11 11 N 1.34779 * 119.99757 * 294.99932 * 9 7 6 12 12 C 1.47083 * 125.62750 * 359.96085 * 11 9 7 13 13 C 1.54467 * 107.29685 * 179.04192 * 12 11 9 14 14 C 1.54372 * 102.87029 * 338.49567 * 13 12 11 15 15 C 1.47566 * 125.63181 * 180.02562 * 11 9 7 16 16 C 1.52107 * 110.56336 * 152.60460 * 14 13 12 17 17 C 1.53343 * 109.44313 * 182.79804 * 16 14 13 18 18 N 1.46929 * 108.68705 * 306.69899 * 17 16 14 19 19 C 1.36935 * 120.55323 * 234.37059 * 18 17 16 20 20 H 1.08000 * 120.00493 * 27.95261 * 19 18 17 21 21 C 1.38811 * 120.00029 * 207.95926 * 19 18 17 22 22 N 1.31621 * 120.00080 * 17.45983 * 21 19 18 23 23 Si 1.86800 * 119.99976 * 197.46394 * 21 19 18 24 24 H 1.48501 * 109.47309 * 89.99849 * 23 21 19 25 25 H 1.48501 * 109.47171 * 209.99639 * 23 21 19 26 26 H 1.48498 * 109.47218 * 329.99840 * 23 21 19 27 27 C 1.46944 * 118.89694 * 54.34316 * 18 17 16 28 28 C 1.52108 * 110.55023 * 276.69356 * 14 13 12 29 29 O 1.43240 * 109.83002 * 66.86465 * 3 2 1 30 30 H 1.08994 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46697 * 300.00287 * 1 2 3 32 32 H 1.09000 * 109.47071 * 59.99707 * 1 2 3 33 33 H 1.09000 * 109.46842 * 239.99227 * 2 1 3 34 34 H 1.09000 * 109.47030 * 119.99737 * 2 1 3 35 35 H 1.08999 * 110.85089 * 100.93872 * 5 3 2 36 36 H 1.09000 * 111.02237 * 337.39407 * 5 3 2 37 37 H 1.08993 * 111.12310 * 276.21233 * 6 5 3 38 38 H 1.08996 * 111.12447 * 152.04987 * 6 5 3 39 39 H 1.08991 * 109.88163 * 59.61659 * 12 11 9 40 40 H 1.09004 * 109.99975 * 298.53411 * 12 11 9 41 41 H 1.09003 * 110.73089 * 220.14986 * 13 12 11 42 42 H 1.08996 * 110.73464 * 96.83965 * 13 12 11 43 43 H 1.08995 * 110.37850 * 84.45815 * 15 11 9 44 44 H 1.09002 * 110.37305 * 322.11114 * 15 11 9 45 45 H 1.09006 * 109.47412 * 302.78304 * 16 14 13 46 46 H 1.09000 * 109.48243 * 62.79968 * 16 14 13 47 47 H 1.08994 * 109.60151 * 186.94178 * 17 16 14 48 48 H 1.08993 * 109.73261 * 66.53715 * 17 16 14 49 49 H 0.97002 * 120.00118 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.60248 * 185.89782 * 27 18 17 51 51 H 1.08992 * 109.73265 * 65.49248 * 27 18 17 52 52 H 1.09004 * 109.47530 * 297.18300 * 28 14 13 53 53 H 1.08998 * 109.47599 * 57.19077 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9927 -0.8300 5 6 3.5786 1.4539 -0.1266 6 6 3.9799 2.6054 0.8353 7 6 2.8995 2.4589 1.9362 8 1 3.1874 1.6855 2.6483 9 6 2.6946 3.7723 2.6461 10 8 1.6308 4.3483 2.5609 11 7 3.6938 4.3068 3.3759 12 6 5.0279 3.7168 3.5639 13 6 5.8389 4.6880 4.4499 14 6 5.0976 6.0285 4.2586 15 6 3.6294 5.5799 4.1193 16 6 5.2736 6.9156 5.4816 17 6 4.4711 8.2088 5.2939 18 7 4.8559 8.8201 4.0144 19 6 5.2893 10.1181 3.9657 20 1 5.7761 10.5576 4.8238 21 6 5.1030 10.8692 2.8133 22 7 4.2299 10.4805 1.9083 23 14 6.0916 12.4316 2.5467 24 1 7.3514 12.1044 1.8317 25 1 5.2964 13.3883 1.7358 26 1 6.4131 13.0442 3.8607 27 6 4.7685 8.0152 2.7881 28 6 5.5693 6.7233 2.9904 29 8 1.7029 2.0771 1.2391 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5140 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8821 1.6791 -1.1490 36 1 4.0052 0.5066 0.2031 37 1 3.9078 3.5738 0.3404 38 1 4.9789 2.4475 1.2418 39 1 5.5197 3.5973 2.5986 40 1 4.9413 2.7490 4.0579 41 1 6.8681 4.7626 4.0987 42 1 5.8079 4.3755 5.4936 43 1 3.1852 5.4234 5.1023 44 1 3.0585 6.3191 3.5573 45 1 4.9142 6.3902 6.3664 46 1 6.3290 7.1577 5.6063 47 1 4.6917 8.8976 6.1092 48 1 3.4050 7.9822 5.2849 49 1 4.0999 11.0052 1.1029 50 1 5.1852 8.5766 1.9518 51 1 3.7265 7.7711 2.5817 52 1 6.6290 6.9627 3.0799 53 1 5.4167 6.0635 2.1363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040721249.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:05 Heat of formation + Delta-G solvation = -85.851189 kcal Electronic energy + Delta-G solvation = -31116.402378 eV Core-core repulsion = 27180.173384 eV Total energy + Delta-G solvation = -3936.228994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.84158 -40.70525 -39.24196 -37.41942 -34.91546 -34.45893 -33.30123 -32.63694 -31.66139 -30.60412 -30.03996 -27.91567 -26.48748 -25.09306 -24.08939 -23.88728 -22.78947 -22.20502 -21.84849 -20.37964 -19.75621 -18.77594 -18.35316 -17.50238 -17.10458 -16.88013 -16.69168 -16.44954 -15.73494 -15.39934 -15.25931 -15.12921 -14.86885 -14.77171 -14.45851 -14.40881 -14.08024 -14.02863 -13.95595 -13.66821 -13.37912 -13.06243 -13.02948 -12.99611 -12.87898 -12.63503 -12.59840 -12.39350 -12.32434 -12.12411 -11.91057 -11.85553 -11.83336 -11.79422 -11.59420 -11.45561 -11.08788 -11.06789 -10.95710 -10.53182 -10.41474 -9.65287 -8.68070 -7.87469 -5.34056 1.45256 1.45960 1.50678 1.55692 1.74120 2.50309 2.87578 3.24164 3.30536 3.50783 3.62895 3.67729 3.72306 3.76384 3.87847 3.98015 4.07811 4.19996 4.26947 4.28093 4.29651 4.38606 4.45914 4.53120 4.54861 4.64710 4.68542 4.72424 4.76438 4.81514 4.84131 4.89175 4.93860 4.97381 4.99168 5.03167 5.07026 5.12106 5.12626 5.20727 5.28133 5.32299 5.37079 5.40723 5.41677 5.42459 5.52371 5.64016 5.76992 5.98991 6.37717 6.51330 7.10521 7.13483 7.86104 8.37842 9.18248 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.002816 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.189961 B = 9940.335619 C =10610.879115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.063 3.937 4 H 0.066 0.934 5 C -0.136 4.136 6 C -0.144 4.144 7 C 0.075 3.925 8 H 0.126 0.874 9 C 0.512 3.488 10 O -0.590 6.590 11 N -0.609 5.609 12 C 0.090 3.910 13 C -0.112 4.112 14 C -0.054 4.054 15 C 0.119 3.881 16 C -0.103 4.103 17 C 0.135 3.865 18 N -0.608 5.608 19 C -0.259 4.259 20 H 0.071 0.929 21 C -0.057 4.057 22 N -0.940 5.940 23 Si 0.969 3.031 24 H -0.282 1.282 25 H -0.300 1.300 26 H -0.266 1.266 27 C 0.181 3.819 28 C -0.107 4.107 29 O -0.384 6.384 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.001 0.999 49 H 0.247 0.753 50 H 0.048 0.952 51 H -0.023 1.023 52 H 0.066 0.934 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.337 -26.360 0.209 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C 0.006 3.994 4 H 0.084 0.916 5 C -0.173 4.173 6 C -0.181 4.181 7 C 0.014 3.986 8 H 0.143 0.857 9 C 0.302 3.698 10 O -0.470 6.470 11 N -0.343 5.343 12 C -0.031 4.031 13 C -0.149 4.149 14 C -0.055 4.055 15 C -0.004 4.004 16 C -0.142 4.142 17 C 0.010 3.990 18 N -0.332 5.332 19 C -0.389 4.389 20 H 0.089 0.911 21 C -0.252 4.252 22 N -0.586 5.586 23 Si 0.798 3.202 24 H -0.209 1.209 25 H -0.227 1.227 26 H -0.190 1.190 27 C 0.055 3.945 28 C -0.145 4.145 29 O -0.303 6.303 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.145 0.855 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.086 0.914 44 H 0.051 0.949 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.019 0.981 49 H 0.056 0.944 50 H 0.066 0.934 51 H -0.005 1.005 52 H 0.084 0.916 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.458 -25.993 0.064 26.560 hybrid contribution -0.523 1.829 -0.609 1.997 sum 4.935 -24.164 -0.545 24.669 Atomic orbital electron populations 1.21733 0.96348 1.01841 1.01121 1.21884 0.96146 0.94331 1.03787 1.23127 0.96439 0.94262 0.85591 0.91572 1.23193 0.93008 0.99619 1.01499 1.23331 0.99705 0.99961 0.95137 1.22884 0.86910 0.92482 0.96321 0.85656 1.21027 0.82600 0.87634 0.78574 1.90706 1.28328 1.64295 1.63639 1.48571 1.14412 1.22773 1.48584 1.22567 0.80794 0.98074 1.01639 1.22716 0.99591 0.91175 1.01422 1.20921 0.92721 0.95891 0.95961 1.22173 0.98197 0.84721 0.95309 1.21714 1.01187 0.95007 0.96320 1.21147 0.95041 0.94717 0.88126 1.44329 1.76404 1.09581 1.02860 1.19576 1.29896 0.89039 1.00374 0.91146 1.25878 0.98955 1.01199 0.99143 1.70246 1.35446 1.41544 1.11408 0.85230 0.77977 0.79082 0.77961 1.20903 1.22665 1.19009 1.20536 0.94132 0.90321 0.89525 1.21738 0.99930 0.96271 0.96605 1.88545 1.29053 1.78470 1.34262 0.91344 0.94516 0.93157 0.88462 0.90750 0.88268 0.87076 0.92320 0.85496 0.89412 0.87974 0.87888 0.88247 0.91405 0.94885 0.89436 0.90797 0.92641 0.98135 0.94371 0.93363 1.00494 0.91568 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.83 71.98 0.71 -1.91 16 2 C -0.12 -1.73 5.51 30.60 0.17 -1.56 16 3 C 0.06 1.19 3.51 31.06 0.11 1.30 16 4 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 5 C -0.14 -1.62 6.54 31.86 0.21 -1.42 16 6 C -0.14 -2.35 5.72 32.05 0.18 -2.16 16 7 C 0.07 1.71 3.29 30.51 0.10 1.81 16 8 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 9 C 0.51 17.07 7.25 87.66 0.64 17.70 16 10 O -0.59 -27.31 16.82 15.48 0.26 -27.05 16 11 N -0.61 -17.17 3.32 -812.50 -2.70 -19.87 16 12 C 0.09 1.48 5.77 86.77 0.50 1.98 16 13 C -0.11 -1.92 5.89 31.56 0.19 -1.73 16 14 C -0.05 -1.56 0.54 -51.92 -0.03 -1.59 16 15 C 0.12 4.02 4.88 86.56 0.42 4.45 16 16 C -0.10 -3.08 4.83 30.41 0.15 -2.93 16 17 C 0.13 5.62 6.24 86.41 0.54 6.16 16 18 N -0.61 -31.20 2.98 -698.49 -2.08 -33.28 16 19 C -0.26 -14.47 9.57 84.03 0.80 -13.67 16 20 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 21 C -0.06 -3.28 4.90 84.86 0.42 -2.86 16 22 N -0.94 -58.53 11.20 21.65 0.24 -58.28 16 23 Si 0.97 45.89 29.59 68.60 2.03 47.92 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 C 0.18 9.10 5.01 86.41 0.43 9.53 16 28 C -0.11 -3.84 4.83 30.41 0.15 -3.69 16 29 O -0.38 -10.81 9.90 -130.48 -1.29 -12.11 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.81 7.90 -2.38 -0.02 0.79 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 0.72 7.86 -2.39 -0.02 0.70 16 37 H 0.06 1.30 8.05 -2.39 -0.02 1.28 16 38 H 0.13 1.17 6.43 -2.39 -0.02 1.16 16 39 H 0.09 1.14 6.02 -2.39 -0.01 1.13 16 40 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.10 1.45 8.01 -2.39 -0.02 1.43 16 42 H 0.10 1.32 8.00 -2.39 -0.02 1.30 16 43 H 0.07 2.19 7.97 -2.39 -0.02 2.17 16 44 H 0.03 1.49 6.11 -2.39 -0.01 1.48 16 45 H 0.09 2.06 8.09 -2.38 -0.02 2.05 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 48 H 0.00 0.03 7.64 -2.39 -0.02 0.01 16 49 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 50 H 0.05 2.77 6.01 -2.39 -0.01 2.76 16 51 H -0.02 -1.32 6.58 -2.39 -0.02 -1.34 16 52 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 53 H 0.06 1.90 7.84 -2.39 -0.02 1.88 16 Total: -1.00 -83.28 397.31 3.01 -80.27 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.87 Total: 13.02 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.68 Total: 9.39 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -4.54 Total: -111.44 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.03 Total: -39.16 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -83.28 3.01 -80.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040721249.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.585 kcal (2) G-P(sol) polarization free energy of solvation -83.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds