Wall clock time and date at job start Tue Mar 31 2020 19:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47167 * 2 1 4 4 C 1.53001 * 109.46956 * 119.99744 * 2 1 3 5 5 H 1.09000 * 109.48076 * 305.39447 * 4 2 1 6 6 O 1.42906 * 109.47979 * 185.37102 * 4 2 1 7 7 C 1.42901 * 114.09412 * 178.84931 * 6 4 2 8 8 C 1.53088 * 109.41771 * 61.15926 * 7 6 4 9 9 C 1.53184 * 109.16102 * 302.38637 * 8 7 6 10 10 C 1.53088 * 109.48840 * 65.42246 * 4 2 1 11 11 H 1.09005 * 109.52363 * 297.50267 * 10 4 2 12 12 C 1.50697 * 109.52505 * 57.68994 * 10 4 2 13 13 O 1.21285 * 119.99996 * 32.37810 * 12 10 4 14 14 N 1.34776 * 120.00397 * 212.37371 * 12 10 4 15 15 C 1.46747 * 125.32378 * 359.69765 * 14 12 10 16 16 C 1.54099 * 106.63313 * 161.58535 * 15 14 12 17 17 H 1.08997 * 112.90532 * 151.02904 * 16 15 14 18 18 C 1.53971 * 109.44533 * 278.63769 * 16 15 14 19 19 N 1.46767 * 106.62849 * 138.17574 * 18 16 15 20 20 C 1.36937 * 125.33765 * 161.50774 * 19 18 16 21 21 H 1.07994 * 120.00445 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99707 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00481 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99843 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47260 * 89.99424 * 24 22 20 26 26 H 1.48501 * 109.47083 * 209.99593 * 24 22 20 27 27 H 1.48509 * 109.46828 * 329.99336 * 24 22 20 28 28 C 1.46672 * 109.32489 * 341.48357 * 19 18 16 29 29 C 1.53723 * 107.94354 * 0.54256 * 28 19 18 30 30 H 1.09001 * 113.06072 * 139.99690 * 29 28 19 31 31 C 1.46635 * 125.33426 * 179.97438 * 14 12 10 32 32 H 1.09007 * 109.47103 * 60.00142 * 1 2 3 33 33 H 1.09006 * 109.47252 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47615 * 300.00508 * 1 2 3 35 35 H 1.09001 * 109.47733 * 239.99966 * 2 1 3 36 36 H 1.08993 * 109.47247 * 185.32987 * 3 2 1 37 37 H 1.09001 * 109.46962 * 305.32881 * 3 2 1 38 38 H 1.09003 * 109.47213 * 65.32328 * 3 2 1 39 39 H 1.09004 * 109.48141 * 301.16934 * 7 6 4 40 40 H 1.09001 * 109.47950 * 181.13815 * 7 6 4 41 41 H 1.09001 * 109.52129 * 182.48563 * 8 7 6 42 42 H 1.08996 * 109.52522 * 62.29417 * 8 7 6 43 43 H 1.08999 * 109.54186 * 176.84983 * 9 8 7 44 44 H 1.08994 * 109.54409 * 297.11407 * 9 8 7 45 45 H 1.09004 * 110.00880 * 281.00468 * 15 14 12 46 46 H 1.08994 * 110.01057 * 42.37723 * 15 14 12 47 47 H 1.08996 * 110.02307 * 257.47137 * 18 16 15 48 48 H 1.09001 * 110.02610 * 18.88118 * 18 16 15 49 49 H 0.96996 * 120.00415 * 180.02562 * 23 22 20 50 50 H 1.09008 * 109.76953 * 240.92809 * 28 19 18 51 51 H 1.08997 * 109.77338 * 120.16783 * 28 19 18 52 52 H 1.08997 * 109.75837 * 300.44751 * 31 14 12 53 53 H 1.09006 * 109.75502 * 61.15900 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5999 -0.2663 2.1367 6 8 3.4634 -0.6131 1.3143 7 6 4.0438 -1.2338 2.4632 8 6 3.7286 -2.7318 2.4461 9 6 2.2096 -2.9256 2.4075 10 6 1.6442 -2.1986 1.1834 11 1 0.5576 -2.2848 1.1783 12 6 2.2054 -2.8148 -0.0721 13 8 3.2610 -2.4212 -0.5213 14 7 1.5344 -3.8034 -0.6957 15 6 0.2560 -4.3718 -0.2529 16 6 -0.3472 -5.1012 -1.4690 17 1 -0.9815 -5.9418 -1.1877 18 6 -1.0470 -4.0797 -2.3841 19 7 -0.7043 -4.4473 -3.7631 20 6 -1.3812 -4.0421 -4.8823 21 1 -2.2440 -3.3993 -4.7886 22 6 -0.9591 -4.4585 -6.1375 23 7 0.0920 -5.2423 -6.2519 24 14 -1.8830 -3.9064 -7.6643 25 1 -1.2996 -2.6353 -8.1634 26 1 -1.7700 -4.9493 -8.7155 27 1 -3.3141 -3.6958 -7.3278 28 6 0.4773 -5.3162 -3.7544 29 6 0.9020 -5.5236 -2.2916 30 1 1.2203 -6.5444 -2.0800 31 6 1.9702 -4.4833 -1.9197 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8934 -0.5138 -0.8900 36 1 3.1257 1.4440 -0.0955 37 1 1.6008 1.9831 -0.8384 38 1 1.7566 1.9281 0.9338 39 1 3.6300 -0.7855 3.3665 40 1 5.1241 -1.0895 2.4476 41 1 4.1327 -3.1993 3.3440 42 1 4.1766 -3.1883 1.5635 43 1 1.9793 -3.9888 2.3387 44 1 1.7662 -2.5131 3.3137 45 1 0.4233 -5.0760 0.5621 46 1 -0.4132 -3.5757 0.0730 47 1 -2.1265 -4.1292 -2.2419 48 1 -0.6870 -3.0744 -2.1653 49 1 0.3871 -5.5330 -7.1290 50 1 1.2871 -4.8429 -4.3098 51 1 0.2319 -6.2770 -4.2069 52 1 2.0754 -3.7580 -2.7265 53 1 2.9241 -4.9811 -1.7449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048825956.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:03 Heat of formation + Delta-G solvation = -81.067946 kcal Electronic energy + Delta-G solvation = -32112.088927 eV Core-core repulsion = 28176.067350 eV Total energy + Delta-G solvation = -3936.021577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.01836 -40.66885 -38.75831 -36.56202 -36.30967 -34.74565 -33.94853 -31.99685 -31.25938 -31.04297 -28.08758 -27.50905 -27.09586 -25.88961 -25.26992 -24.10671 -22.26224 -21.85246 -21.21259 -20.83772 -19.80936 -18.76358 -18.07100 -17.42085 -17.11958 -16.98632 -16.73886 -16.43236 -15.73821 -15.53266 -15.36903 -15.04687 -14.88853 -14.73695 -14.46065 -14.30897 -13.88566 -13.75810 -13.60799 -13.51986 -13.32488 -13.28040 -13.21228 -13.04130 -12.92973 -12.73358 -12.68317 -12.43242 -12.14487 -12.02884 -12.01632 -11.87869 -11.73994 -11.66361 -11.58568 -11.44773 -11.36663 -11.20936 -10.74421 -10.55792 -10.20695 -9.55473 -8.89369 -7.86661 -5.21827 1.43600 1.45826 1.54201 1.73380 2.04875 2.48042 2.91506 3.31071 3.38142 3.46925 3.54928 3.73409 3.77203 3.87930 3.94859 4.02530 4.05586 4.11951 4.15439 4.22699 4.30307 4.33796 4.36813 4.51445 4.54803 4.62097 4.63162 4.73977 4.77450 4.77869 4.80801 4.83644 4.86985 4.91781 4.96368 4.99282 5.01720 5.04741 5.13553 5.15683 5.25525 5.30037 5.32963 5.38063 5.41376 5.43552 5.48037 5.59565 5.76258 6.19756 6.48845 6.63970 7.09977 7.29903 7.78996 8.40565 9.23479 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.003463 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.153987 B = 8083.749647 C = 8866.801663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 C -0.132 4.132 4 C 0.115 3.885 5 H 0.095 0.905 6 O -0.386 6.386 7 C 0.058 3.942 8 C -0.159 4.159 9 C -0.104 4.104 10 C -0.134 4.134 11 H 0.121 0.879 12 C 0.529 3.471 13 O -0.567 6.567 14 N -0.615 5.615 15 C 0.113 3.887 16 C -0.095 4.095 17 H 0.129 0.871 18 C 0.141 3.859 19 N -0.624 5.624 20 C -0.242 4.242 21 H 0.083 0.917 22 C -0.066 4.066 23 N -0.951 5.951 24 Si 0.976 3.024 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.264 1.264 28 C 0.198 3.802 29 C -0.109 4.109 30 H 0.116 0.884 31 C 0.130 3.870 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.038 0.962 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.046 0.954 48 H 0.008 0.992 49 H 0.246 0.754 50 H 0.000 1.000 51 H 0.015 0.985 52 H 0.023 0.977 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 5.016 25.258 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.189 4.189 4 C 0.057 3.943 5 H 0.113 0.887 6 O -0.305 6.305 7 C -0.018 4.018 8 C -0.196 4.196 9 C -0.142 4.142 10 C -0.155 4.155 11 H 0.138 0.862 12 C 0.319 3.681 13 O -0.445 6.445 14 N -0.349 5.349 15 C -0.009 4.009 16 C -0.114 4.114 17 H 0.147 0.853 18 C 0.016 3.984 19 N -0.350 5.350 20 C -0.371 4.371 21 H 0.101 0.899 22 C -0.259 4.259 23 N -0.600 5.600 24 Si 0.805 3.195 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.189 1.189 28 C 0.073 3.927 29 C -0.129 4.129 30 H 0.134 0.866 31 C 0.006 3.994 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.057 0.943 43 H 0.098 0.902 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.111 0.889 47 H 0.065 0.935 48 H 0.026 0.974 49 H 0.055 0.945 50 H 0.019 0.981 51 H 0.034 0.966 52 H 0.041 0.959 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.127 5.370 24.710 25.312 hybrid contribution 0.062 -0.069 -2.000 2.002 sum 1.189 5.301 22.710 23.351 Atomic orbital electron populations 1.21833 0.92691 1.02283 1.03088 1.21167 0.96687 0.97135 0.96638 1.21625 1.00515 0.94608 1.02191 1.22027 0.82096 0.91731 0.98459 0.88740 1.88039 1.20054 1.76538 1.45833 1.22654 0.98804 0.91926 0.88437 1.22200 0.97043 0.97924 1.02475 1.21572 0.95156 1.01230 0.96196 1.22190 1.03144 0.97383 0.92780 0.86155 1.20745 0.83932 0.77831 0.85594 1.90719 1.24421 1.61830 1.67552 1.48473 1.23752 1.36481 1.26146 1.22197 0.83704 0.98477 0.96493 1.22998 0.95924 0.98644 0.93832 0.85292 1.21428 0.97797 0.95285 0.83927 1.44531 1.31708 1.57027 1.01738 1.19449 1.08292 1.24502 0.84900 0.89928 1.25639 0.99267 1.00471 1.00487 1.70186 1.27663 1.39836 1.22347 0.85110 0.78574 0.76756 0.79109 1.21869 1.21956 1.18899 1.20703 0.88169 0.93052 0.90799 1.22956 0.94821 0.98987 0.96145 0.86618 1.21558 0.97520 0.93793 0.86491 0.92949 0.92574 0.89617 0.94784 0.93912 0.93016 0.90771 0.90872 0.89530 0.88534 0.94284 0.90170 0.87232 0.87915 0.88875 0.93543 0.97394 0.94492 0.98136 0.96649 0.95895 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.96 71.98 0.64 -2.23 16 2 C -0.10 -2.50 2.48 -10.79 -0.03 -2.52 16 3 C -0.13 -3.09 8.90 71.98 0.64 -2.45 16 4 C 0.11 2.51 1.81 30.62 0.06 2.57 16 5 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 6 O -0.39 -10.38 8.18 -129.46 -1.06 -11.44 16 7 C 0.06 1.12 6.84 72.01 0.49 1.61 16 8 C -0.16 -2.93 5.75 30.69 0.18 -2.75 16 9 C -0.10 -1.54 5.52 30.72 0.17 -1.37 16 10 C -0.13 -2.75 1.92 -11.45 -0.02 -2.77 16 11 H 0.12 1.90 5.07 -2.38 -0.01 1.89 16 12 C 0.53 16.41 5.14 87.66 0.45 16.86 16 13 O -0.57 -23.13 13.69 16.47 0.23 -22.91 16 14 N -0.61 -18.62 3.30 -817.37 -2.70 -21.32 16 15 C 0.11 2.48 5.70 86.70 0.49 2.98 16 16 C -0.09 -2.71 4.16 -9.26 -0.04 -2.75 16 17 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 18 C 0.14 5.43 6.49 86.66 0.56 5.99 16 19 N -0.62 -32.01 3.38 -697.59 -2.36 -34.37 16 20 C -0.24 -13.73 10.25 84.03 0.86 -12.87 16 21 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 22 C -0.07 -3.81 5.48 84.86 0.47 -3.34 16 23 N -0.95 -58.42 10.25 21.65 0.22 -58.20 16 24 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 28 C 0.20 9.84 4.77 86.59 0.41 10.25 16 29 C -0.11 -3.87 4.02 -9.49 -0.04 -3.90 16 30 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 31 C 0.13 4.82 6.21 86.58 0.54 5.36 16 32 H 0.05 1.16 8.14 -2.38 -0.02 1.15 16 33 H 0.06 1.12 6.64 -2.38 -0.02 1.10 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.03 1.21 6.42 -2.39 -0.02 1.20 16 36 H 0.04 1.15 7.73 -2.39 -0.02 1.14 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 41 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.04 1.04 6.76 -2.39 -0.02 1.03 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.09 1.67 6.72 -2.39 -0.02 1.65 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.01 0.33 7.72 -2.39 -0.02 0.32 16 49 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 50 H 0.00 0.03 6.73 -2.38 -0.02 0.01 16 51 H 0.02 0.85 7.37 -2.39 -0.02 0.83 16 52 H 0.02 1.07 7.29 -2.39 -0.02 1.05 16 53 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -79.26 390.81 3.07 -76.19 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.87 Total: 14.75 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 5.84 Total: 8.66 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -4.84 Total: -113.90 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.83 Total: -34.35 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -79.26 3.07 -76.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048825956.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.874 kcal (2) G-P(sol) polarization free energy of solvation -79.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds