Wall clock time and date at job start Tue Mar 31 2020 19:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 H 1.08996 * 109.48226 * 60.02640 * 4 2 1 6 6 C 1.53095 * 109.47840 * 180.02562 * 4 2 1 7 7 C 1.53176 * 109.16513 * 177.59396 * 6 4 2 8 8 H 1.08997 * 109.54789 * 62.88585 * 7 6 4 9 9 C 1.50697 * 109.54384 * 183.15409 * 7 6 4 10 10 O 1.21280 * 120.00534 * 359.55579 * 9 7 6 11 11 N 1.34779 * 119.99952 * 179.55377 * 9 7 6 12 12 C 1.46661 * 125.33582 * 179.97438 * 11 9 7 13 13 C 1.53669 * 107.97287 * 180.71111 * 12 11 9 14 14 H 1.09001 * 112.77397 * 140.60483 * 13 12 11 15 15 C 1.53976 * 109.29942 * 266.93227 * 13 12 11 16 16 N 1.46762 * 106.67835 * 138.83324 * 15 13 12 17 17 C 1.36936 * 125.33156 * 161.58656 * 16 15 13 18 18 H 1.07999 * 120.00482 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99696 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00168 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99964 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46752 * 90.00361 * 21 19 17 23 23 H 1.48499 * 109.47098 * 210.00194 * 21 19 17 24 24 H 1.48493 * 109.47170 * 330.00568 * 21 19 17 25 25 C 1.46652 * 109.32986 * 341.54937 * 16 15 13 26 26 C 1.53676 * 107.97400 * 0.71178 * 25 16 15 27 27 H 1.08994 * 112.77721 * 139.88376 * 26 25 16 28 28 C 1.46763 * 125.33360 * 359.69538 * 11 9 7 29 29 C 1.53178 * 109.03398 * 303.01866 * 7 6 4 30 30 C 1.53096 * 109.16195 * 56.98227 * 29 7 6 31 31 O 1.42898 * 109.48588 * 299.99939 * 4 2 1 32 32 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 33 33 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 35 35 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 36 36 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 37 37 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 38 38 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 39 39 H 1.08999 * 109.52318 * 297.50215 * 6 4 2 40 40 H 1.09001 * 109.52208 * 57.68618 * 6 4 2 41 41 H 1.08997 * 109.76462 * 300.34260 * 12 11 9 42 42 H 1.08997 * 109.76468 * 61.08007 * 12 11 9 43 43 H 1.08999 * 110.01794 * 258.13792 * 15 13 12 44 44 H 1.09000 * 110.01814 * 19.52663 * 15 13 12 45 45 H 0.96993 * 119.99917 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.76728 * 120.34086 * 25 16 15 47 47 H 1.09000 * 109.77087 * 241.06025 * 25 16 15 48 48 H 1.08998 * 110.01617 * 280.85235 * 28 11 9 49 49 H 1.09001 * 110.01443 * 42.24416 * 28 11 9 50 50 H 1.09000 * 109.52787 * 297.07157 * 29 7 6 51 51 H 1.09007 * 109.57388 * 176.91643 * 29 7 6 52 52 H 1.08998 * 109.47743 * 182.40393 * 30 29 7 53 53 H 1.08997 * 109.49032 * 62.38138 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6771 -1.7490 1.2492 6 6 3.5709 -0.7208 1.2499 7 6 4.0734 -1.3911 2.5323 8 1 3.7512 -2.4322 2.5500 9 6 5.5783 -1.3264 2.5785 10 8 6.1910 -0.8039 1.6717 11 7 6.2433 -1.8492 3.6278 12 6 7.7007 -1.8515 3.7925 13 6 8.0272 -2.5616 5.1156 14 1 8.9086 -3.1991 5.0460 15 6 8.1340 -1.5164 6.2412 16 7 7.4715 -2.0940 7.4166 17 6 7.6404 -1.6716 8.7082 18 1 8.3066 -0.8497 8.9249 19 6 6.9552 -2.3000 9.7390 20 7 6.1429 -3.3014 9.4750 21 14 7.1861 -1.7243 11.5011 22 1 6.1868 -0.6708 11.8126 23 1 6.9999 -2.8718 12.4252 24 1 8.5548 -1.1727 11.6663 25 6 6.5997 -3.1937 6.9909 26 6 6.7259 -3.3359 5.4659 27 1 6.7481 -4.3755 5.1395 28 6 5.6224 -2.5003 4.7872 29 6 3.4914 -0.6539 3.7423 30 6 1.9635 -0.6569 3.6455 31 8 1.5637 -0.0478 2.4162 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1301 1.4425 0.0005 38 1 1.6767 1.9563 -0.8900 39 1 3.9356 -1.2726 0.3835 40 1 3.9349 0.3058 1.2087 41 1 8.1645 -2.3855 2.9632 42 1 8.0697 -0.8263 3.8235 43 1 9.1816 -1.3147 6.4650 44 1 7.6316 -0.5958 5.9445 45 1 5.6645 -3.7407 10.1953 46 1 6.9113 -4.1195 7.4745 47 1 5.5666 -2.9691 7.2562 48 1 5.2420 -1.7481 5.4782 49 1 4.8113 -3.1508 4.4598 50 1 3.8538 0.3741 3.7516 51 1 3.7993 -1.1569 4.6591 52 1 1.5452 -0.0968 4.4817 53 1 1.5992 -1.6837 3.6773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049154666.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:11 Heat of formation + Delta-G solvation = -84.029074 kcal Electronic energy + Delta-G solvation = -31026.907433 eV Core-core repulsion = 27090.757452 eV Total energy + Delta-G solvation = -3936.149981 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.90820 -40.63229 -39.40454 -36.67681 -36.17480 -34.85910 -33.97373 -31.63106 -31.51010 -30.94931 -28.08255 -27.70155 -27.12949 -26.53706 -24.64039 -24.32753 -22.25389 -21.83993 -20.85203 -20.73370 -20.20149 -18.89695 -18.17577 -17.43580 -16.93004 -16.89837 -16.58952 -16.52429 -16.05003 -15.65256 -15.49627 -15.18671 -15.10788 -14.71137 -14.60832 -14.41423 -14.12887 -13.79744 -13.60177 -13.53241 -13.43604 -13.28530 -13.17162 -12.89117 -12.72692 -12.68914 -12.57237 -12.52590 -12.23271 -12.00441 -11.86694 -11.76437 -11.71975 -11.60025 -11.53908 -11.49197 -11.47224 -11.24604 -10.90069 -10.68446 -10.35254 -9.69071 -8.87403 -7.84854 -5.19312 1.47783 1.48007 1.51509 1.56707 1.94666 2.49928 2.86013 3.24319 3.33241 3.47562 3.55362 3.62033 3.72767 3.83804 3.90068 3.92256 4.03187 4.12902 4.18238 4.21885 4.27599 4.34624 4.37254 4.45618 4.48032 4.58664 4.64571 4.69336 4.74715 4.76821 4.81704 4.83250 4.88630 4.89755 4.98813 5.02254 5.04746 5.08663 5.11540 5.14285 5.19075 5.23837 5.28615 5.33845 5.48406 5.49458 5.56039 5.64953 5.79948 6.22487 6.33368 6.46137 7.05654 7.13690 7.79954 8.41355 9.24803 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016784 B = 0.002818 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.874581 B = 9932.742983 C =10942.593857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.145 4.145 4 C 0.096 3.904 5 H 0.073 0.927 6 C -0.124 4.124 7 C -0.098 4.098 8 H 0.119 0.881 9 C 0.529 3.471 10 O -0.581 6.581 11 N -0.609 5.609 12 C 0.122 3.878 13 C -0.095 4.095 14 H 0.116 0.884 15 C 0.140 3.860 16 N -0.623 5.623 17 C -0.244 4.244 18 H 0.077 0.923 19 C -0.058 4.058 20 N -0.945 5.945 21 Si 0.973 3.027 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.273 1.273 25 C 0.198 3.802 26 C -0.111 4.111 27 H 0.116 0.884 28 C 0.118 3.882 29 C -0.151 4.151 30 C 0.067 3.933 31 O -0.386 6.386 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.011 0.989 45 H 0.248 0.752 46 H 0.015 0.985 47 H 0.021 0.979 48 H 0.059 0.941 49 H 0.099 0.901 50 H 0.055 0.945 51 H 0.086 0.914 52 H 0.103 0.897 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 1.004 -18.215 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 C -0.202 4.202 4 C 0.039 3.961 5 H 0.091 0.909 6 C -0.162 4.162 7 C -0.119 4.119 8 H 0.137 0.863 9 C 0.320 3.680 10 O -0.461 6.461 11 N -0.341 5.341 12 C -0.001 4.001 13 C -0.115 4.115 14 H 0.134 0.866 15 C 0.014 3.986 16 N -0.349 5.349 17 C -0.373 4.373 18 H 0.094 0.906 19 C -0.252 4.252 20 N -0.593 5.593 21 Si 0.802 3.198 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.198 1.198 25 C 0.073 3.927 26 C -0.131 4.131 27 H 0.134 0.866 28 C -0.004 4.004 29 C -0.189 4.189 30 C -0.010 4.010 31 O -0.306 6.306 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.028 0.972 45 H 0.057 0.943 46 H 0.033 0.967 47 H 0.039 0.961 48 H 0.077 0.923 49 H 0.117 0.883 50 H 0.074 0.926 51 H 0.104 0.896 52 H 0.121 0.879 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.374 1.441 -18.559 20.842 hybrid contribution 0.657 0.198 1.564 1.708 sum -8.717 1.639 -16.995 19.171 Atomic orbital electron populations 1.21731 0.93919 1.02101 1.01951 1.21187 0.96985 0.96613 0.95758 1.21803 1.00478 0.96151 1.01785 1.22233 0.91302 0.96399 0.86184 0.90904 1.22054 0.96434 1.01517 0.96199 1.21349 0.89393 1.03198 0.97928 0.86282 1.20763 0.90711 0.76643 0.79921 1.90654 1.70859 1.46347 1.38287 1.48390 1.07682 1.57542 1.20492 1.21684 0.80877 1.00446 0.97086 1.22795 0.99182 0.96869 0.92631 0.86564 1.21446 0.95808 0.94381 0.86922 1.44512 1.50776 1.37514 1.02097 1.19366 1.21871 1.13039 0.83033 0.90561 1.25529 0.99421 0.98669 1.01556 1.70129 1.32403 1.25503 1.31291 0.85161 0.77851 0.76822 0.79974 1.21436 1.21907 1.19826 1.20716 0.93439 0.90141 0.88428 1.23119 0.93906 0.99926 0.96109 0.86596 1.22245 0.96395 0.95557 0.86251 1.22310 0.98153 1.00722 0.97689 1.22605 0.91893 0.99522 0.86970 1.87914 1.74370 1.54465 1.13804 0.91914 0.92160 0.93014 0.88894 0.93188 0.93463 0.91856 0.90219 0.91911 0.90353 0.92330 0.94457 0.97161 0.94252 0.96675 0.96057 0.92289 0.88330 0.92642 0.89568 0.87852 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.05 71.98 0.65 -1.30 16 2 C -0.09 -1.37 2.81 -10.79 -0.03 -1.40 16 3 C -0.14 -2.58 8.70 71.98 0.63 -1.95 16 4 C 0.10 1.71 2.38 30.63 0.07 1.79 16 5 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 6 C -0.12 -2.64 3.72 30.68 0.11 -2.53 16 7 C -0.10 -2.16 2.00 -11.42 -0.02 -2.19 16 8 H 0.12 2.09 7.89 -2.39 -0.02 2.07 16 9 C 0.53 15.46 7.21 87.66 0.63 16.09 16 10 O -0.58 -20.77 16.28 -3.03 -0.05 -20.82 16 11 N -0.61 -17.44 3.31 -817.18 -2.70 -20.14 16 12 C 0.12 3.50 6.19 86.57 0.54 4.04 16 13 C -0.10 -2.93 4.10 -9.41 -0.04 -2.97 16 14 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 15 C 0.14 5.51 6.42 86.66 0.56 6.07 16 16 N -0.62 -30.44 3.38 -697.73 -2.36 -32.79 16 17 C -0.24 -13.30 10.25 84.03 0.86 -12.44 16 18 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.06 -3.20 5.48 84.86 0.47 -2.73 16 20 N -0.94 -53.85 10.25 21.65 0.22 -53.63 16 21 Si 0.97 44.59 29.55 68.60 2.03 46.62 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 25 C 0.20 8.84 4.72 86.58 0.41 9.25 16 26 C -0.11 -3.51 4.12 -9.34 -0.04 -3.55 16 27 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 28 C 0.12 3.30 4.41 86.72 0.38 3.69 16 29 C -0.15 -3.35 5.19 30.69 0.16 -3.19 16 30 C 0.07 1.24 6.84 72.01 0.49 1.74 16 31 O -0.39 -8.04 9.06 -148.98 -1.35 -9.39 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.86 7.68 -2.39 -0.02 0.84 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.05 1.02 7.68 -2.39 -0.02 1.00 16 37 H 0.05 0.94 6.38 -2.39 -0.02 0.92 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 1.62 6.20 -2.39 -0.01 1.61 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 1.80 7.63 -2.39 -0.02 1.78 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.01 0.43 7.56 -2.39 -0.02 0.42 16 45 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 46 H 0.02 0.77 7.37 -2.39 -0.02 0.75 16 47 H 0.02 1.06 6.93 -2.39 -0.02 1.04 16 48 H 0.06 1.94 6.15 -2.39 -0.01 1.92 16 49 H 0.10 2.18 7.61 -2.39 -0.02 2.16 16 50 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.09 2.00 4.98 -2.38 -0.01 1.98 16 52 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 53 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -66.76 392.78 2.49 -64.27 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.87 Total: 17.47 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.83 Total: 8.41 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -4.84 Total: -106.56 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -1.40 Total: -30.21 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -66.76 2.49 -64.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049154666.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.756 kcal (2) G-P(sol) polarization free energy of solvation -66.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds