Wall clock time and date at job start Tue Mar 31 2020 19:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46933 * 2 1 4 4 C 1.53000 * 109.47509 * 119.99988 * 2 1 3 5 5 H 1.09000 * 110.53512 * 45.05270 * 4 2 1 6 6 C 1.54815 * 110.48493 * 282.44138 * 4 2 1 7 7 C 1.54996 * 102.08818 * 220.44058 * 6 4 2 8 8 O 1.44732 * 103.51959 * 37.05913 * 7 6 4 9 9 C 1.43741 * 106.78325 * 319.91866 * 8 7 6 10 10 H 1.09004 * 109.88394 * 267.04541 * 9 8 7 11 11 C 1.50703 * 109.87706 * 146.04698 * 9 8 7 12 12 O 1.21287 * 119.99520 * 349.95044 * 11 9 8 13 13 N 1.34778 * 120.00317 * 169.94625 * 11 9 8 14 14 C 1.46798 * 119.57405 * 4.30727 * 13 11 9 15 15 C 1.53466 * 107.59388 * 232.05215 * 14 13 11 16 16 C 1.52737 * 108.43994 * 301.92481 * 15 14 13 17 17 C 1.53006 * 110.80767 * 63.76295 * 16 15 14 18 18 H 1.09004 * 111.38820 * 68.76789 * 17 16 15 19 19 C 1.45114 * 119.57565 * 184.03074 * 13 11 9 20 20 H 1.08997 * 109.97310 * 11.93450 * 19 13 11 21 21 C 1.54421 * 111.60716 * 248.64500 * 19 13 11 22 22 C 1.54569 * 102.45043 * 203.42234 * 21 19 13 23 23 N 1.48210 * 107.11722 * 191.93336 * 17 16 15 24 24 C 1.36942 * 125.76833 * 270.86025 * 23 17 16 25 25 H 1.08004 * 119.99237 * 359.97438 * 24 23 17 26 26 C 1.38806 * 120.00207 * 180.02562 * 24 23 17 27 27 N 1.31616 * 120.00077 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 119.99997 * 180.02562 * 26 24 23 29 29 H 1.48498 * 109.47230 * 60.00198 * 28 26 24 30 30 H 1.48501 * 109.47112 * 179.97438 * 28 26 24 31 31 H 1.48499 * 109.47234 * 299.99680 * 28 26 24 32 32 H 1.09003 * 109.47096 * 67.25681 * 1 2 3 33 33 H 1.08998 * 109.46559 * 187.25362 * 1 2 3 34 34 H 1.08992 * 109.46888 * 307.25327 * 1 2 3 35 35 H 1.08998 * 109.47262 * 240.00701 * 2 1 3 36 36 H 1.08999 * 109.47257 * 169.73479 * 3 2 1 37 37 H 1.08998 * 109.47061 * 289.73709 * 3 2 1 38 38 H 1.09002 * 109.46884 * 49.73591 * 3 2 1 39 39 H 1.08996 * 110.90996 * 338.63289 * 6 4 2 40 40 H 1.08991 * 110.91011 * 102.20958 * 6 4 2 41 41 H 1.09003 * 110.62021 * 155.52527 * 7 6 4 42 42 H 1.09002 * 110.61957 * 278.36510 * 7 6 4 43 43 H 1.08999 * 109.83736 * 351.57566 * 14 13 11 44 44 H 1.09008 * 109.83440 * 112.46847 * 14 13 11 45 45 H 1.09001 * 109.63863 * 61.59995 * 15 14 13 46 46 H 1.08993 * 109.64451 * 182.02010 * 15 14 13 47 47 H 1.09000 * 109.20870 * 184.10772 * 16 15 14 48 48 H 1.09001 * 109.20773 * 303.42058 * 16 15 14 49 49 H 1.08998 * 110.81618 * 321.66617 * 21 19 13 50 50 H 1.09001 * 110.81095 * 85.18600 * 21 19 13 51 51 H 1.08992 * 109.88991 * 141.09148 * 22 21 19 52 52 H 1.09000 * 109.88325 * 262.26837 * 22 21 19 53 53 H 0.96999 * 120.00559 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.4878 -1.6473 1.4084 6 6 1.9262 0.1977 2.4899 7 6 3.2496 -0.1024 3.2387 8 8 4.2117 -0.2719 2.1709 9 6 3.5495 -1.0073 1.1284 10 1 3.7355 -2.0742 1.2517 11 6 4.0511 -0.5522 -0.2179 12 8 4.7524 0.4338 -0.3020 13 7 3.7205 -1.2409 -1.3282 14 6 2.7951 -2.3760 -1.2282 15 6 3.4620 -3.5796 -1.9078 16 6 3.7735 -3.2055 -3.3555 17 6 4.7896 -2.0631 -3.4151 18 1 5.7728 -2.3874 -3.0739 19 6 4.2793 -0.8470 -2.6083 20 1 5.0886 -0.1326 -2.4572 21 6 3.1998 -0.2600 -3.5435 22 6 3.8136 -0.4859 -4.9440 23 7 4.8132 -1.5728 -4.8136 24 6 5.6183 -2.0470 -5.8146 25 1 6.3140 -2.8485 -5.6140 26 6 5.5412 -1.4970 -7.0867 27 7 4.6938 -0.5200 -7.3310 28 14 6.6390 -2.1445 -8.4524 29 1 6.3621 -3.5874 -8.6681 30 1 6.3646 -1.3957 -9.7051 31 1 8.0627 -1.9653 -8.0699 32 1 -0.3633 0.3973 -0.9478 33 1 -0.3632 -1.0195 0.1298 34 1 -0.3633 0.6220 0.8179 35 1 1.8934 -0.5137 -0.8900 36 1 3.1145 1.4481 0.1831 37 1 1.8339 1.9008 -0.9673 38 1 1.5349 2.0065 0.7842 39 1 1.8756 1.2457 2.1944 40 1 1.0640 -0.0751 3.0982 41 1 3.5288 0.7366 3.8762 42 1 3.1595 -1.0160 3.8264 43 1 2.6012 -2.6038 -0.1800 44 1 1.8596 -2.1362 -1.7337 45 1 4.3865 -3.8286 -1.3868 46 1 2.7864 -4.4345 -1.8841 47 1 4.1809 -4.0752 -3.8709 48 1 2.8541 -2.8939 -3.8512 49 1 2.2606 -0.8034 -3.4401 50 1 3.0566 0.8032 -3.3504 51 1 3.0346 -0.7800 -5.6473 52 1 4.3003 0.4271 -5.2871 53 1 4.6396 -0.1359 -8.2200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049480905.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:54 Heat of formation + Delta-G solvation = -51.819355 kcal Electronic energy + Delta-G solvation = -32742.373851 eV Core-core repulsion = 28807.620588 eV Total energy + Delta-G solvation = -3934.753263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.51537 -40.53081 -38.83678 -37.12891 -36.34683 -34.18814 -33.70268 -31.53067 -31.35901 -30.34015 -29.48836 -28.09120 -26.49715 -25.91862 -24.35447 -23.82189 -23.05467 -22.05297 -21.54414 -20.26428 -19.30595 -18.74241 -18.40245 -17.60912 -17.43787 -16.79539 -16.55049 -16.13217 -16.05515 -15.73136 -15.31989 -15.07410 -15.01761 -14.68113 -14.43946 -14.32707 -14.00846 -13.91050 -13.62603 -13.55315 -13.22042 -13.10171 -12.88635 -12.80875 -12.66418 -12.57591 -12.42285 -12.36543 -12.24620 -12.11889 -12.05317 -11.90962 -11.73527 -11.54412 -11.50095 -11.37941 -11.18966 -11.08350 -10.96875 -10.71771 -10.33458 -9.56194 -8.89269 -7.84184 -5.19630 1.44425 1.47945 1.53774 1.55960 1.80791 2.49344 3.01130 3.32242 3.35047 3.45642 3.55179 3.71208 3.87295 3.89688 4.00297 4.05114 4.09817 4.15223 4.18340 4.30684 4.33452 4.36468 4.40150 4.46155 4.57193 4.59326 4.66694 4.77539 4.79791 4.81850 4.83574 4.86943 4.90024 4.92458 4.97448 5.08852 5.12061 5.15538 5.20612 5.26093 5.35847 5.37645 5.39784 5.49066 5.51999 5.56186 5.61376 5.65003 5.72935 5.88004 6.16774 6.43591 7.07090 7.19612 7.74061 8.40837 9.26014 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021809 B = 0.003376 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.560736 B = 8292.240413 C = 8453.280760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C -0.166 4.166 4 C -0.099 4.099 5 H 0.133 0.867 6 C -0.152 4.152 7 C 0.037 3.963 8 O -0.387 6.387 9 C 0.064 3.936 10 H 0.118 0.882 11 C 0.515 3.485 12 O -0.573 6.573 13 N -0.587 5.587 14 C 0.098 3.902 15 C -0.124 4.124 16 C -0.118 4.118 17 C 0.151 3.849 18 H 0.046 0.954 19 C 0.150 3.850 20 H 0.061 0.939 21 C -0.128 4.128 22 C 0.192 3.808 23 N -0.619 5.619 24 C -0.237 4.237 25 H 0.081 0.919 26 C -0.065 4.065 27 N -0.951 5.951 28 Si 0.977 3.023 29 H -0.274 1.274 30 H -0.295 1.295 31 H -0.281 1.281 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.032 0.968 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.047 0.953 48 H 0.053 0.947 49 H 0.085 0.915 50 H 0.060 0.940 51 H 0.014 0.986 52 H 0.008 0.992 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.136 -5.583 23.328 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.136 4.136 3 C -0.222 4.222 4 C -0.118 4.118 5 H 0.151 0.849 6 C -0.189 4.189 7 C -0.038 4.038 8 O -0.306 6.306 9 C 0.003 3.997 10 H 0.135 0.865 11 C 0.305 3.695 12 O -0.452 6.452 13 N -0.320 5.320 14 C -0.022 4.022 15 C -0.163 4.163 16 C -0.158 4.158 17 C 0.044 3.956 18 H 0.064 0.936 19 C 0.045 3.955 20 H 0.079 0.921 21 C -0.167 4.167 22 C 0.067 3.933 23 N -0.344 5.344 24 C -0.365 4.365 25 H 0.098 0.902 26 C -0.258 4.258 27 N -0.600 5.600 28 Si 0.805 3.195 29 H -0.200 1.200 30 H -0.222 1.222 31 H -0.208 1.208 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.139 0.861 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.125 0.875 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.104 0.896 50 H 0.079 0.921 51 H 0.033 0.967 52 H 0.026 0.974 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.496 -4.951 23.053 26.685 hybrid contribution 1.010 0.416 -1.703 2.023 sum -11.487 -4.534 21.350 24.664 Atomic orbital electron populations 1.21774 0.92784 1.03102 1.01717 1.21666 0.97842 0.95749 0.98356 1.22246 1.02047 0.97350 1.00602 1.22723 0.91471 1.01572 0.96022 0.84901 1.23403 0.98966 1.00926 0.95593 1.23926 0.87460 1.02690 0.89763 1.89057 1.37094 1.76561 1.27891 1.22933 0.94136 0.97550 0.85116 0.86450 1.21059 0.79162 0.82556 0.86710 1.90660 1.39802 1.27682 1.87095 1.47654 1.46401 1.32388 1.05559 1.22323 0.92168 0.84075 1.03683 1.21922 1.01913 0.98216 0.94203 1.21889 0.98922 0.97710 0.97293 1.21620 0.96793 0.93026 0.84195 0.93572 1.21270 0.95468 0.96228 0.82575 0.92113 1.22846 0.98496 1.00211 0.95134 1.21028 0.90214 0.90163 0.91883 1.45195 1.43505 1.40321 1.05426 1.19361 1.14014 1.14221 0.88954 0.90158 1.25598 1.01192 0.99169 0.99818 1.70159 1.40169 1.28919 1.20782 0.85182 0.78349 0.77697 0.78279 1.20003 1.22150 1.20751 0.93623 0.90345 0.91985 0.89581 0.92949 0.94862 0.91422 0.90658 0.86788 0.88596 0.89356 0.86107 0.89516 0.91421 0.87476 0.93407 0.92841 0.89647 0.92122 0.96738 0.97383 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.07 71.98 0.65 -1.12 16 2 C -0.12 -2.12 2.03 -10.79 -0.02 -2.15 16 3 C -0.17 -4.12 7.74 71.98 0.56 -3.57 16 4 C -0.10 -1.35 1.87 -9.80 -0.02 -1.37 16 5 H 0.13 0.79 7.69 -2.39 -0.02 0.78 16 6 C -0.15 -1.84 6.28 31.90 0.20 -1.64 16 7 C 0.04 0.55 7.72 72.67 0.56 1.11 16 8 O -0.39 -9.89 10.78 -130.45 -1.41 -11.29 16 9 C 0.06 1.33 2.74 30.22 0.08 1.41 16 10 H 0.12 1.79 7.22 -2.38 -0.02 1.77 16 11 C 0.52 15.73 4.50 87.66 0.39 16.12 16 12 O -0.57 -23.78 13.93 15.48 0.22 -23.56 16 13 N -0.59 -16.61 1.79 -793.61 -1.42 -18.03 16 14 C 0.10 1.81 4.30 86.48 0.37 2.18 16 15 C -0.12 -2.54 6.11 30.66 0.19 -2.36 16 16 C -0.12 -3.84 5.10 30.51 0.16 -3.68 16 17 C 0.15 6.18 3.61 45.21 0.16 6.35 16 18 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 19 C 0.15 5.73 3.09 46.28 0.14 5.87 16 20 H 0.06 2.81 6.99 -2.39 -0.02 2.79 16 21 C -0.13 -4.97 6.08 31.61 0.19 -4.77 16 22 C 0.19 9.78 5.23 86.58 0.45 10.23 16 23 N -0.62 -32.12 2.94 -663.46 -1.95 -34.07 16 24 C -0.24 -13.43 10.30 84.03 0.87 -12.57 16 25 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 26 C -0.06 -3.75 5.49 84.86 0.47 -3.29 16 27 N -0.95 -58.30 10.36 21.65 0.22 -58.07 16 28 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 29 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 30 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 31 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.67 8.05 -2.39 -0.02 0.65 16 34 H 0.06 0.70 8.01 -2.39 -0.02 0.68 16 35 H 0.09 1.83 3.23 -2.39 -0.01 1.82 16 36 H 0.05 1.69 4.61 -2.39 -0.01 1.68 16 37 H 0.03 0.91 8.14 -2.39 -0.02 0.90 16 38 H 0.07 1.41 6.25 -2.39 -0.01 1.39 16 39 H 0.07 1.19 5.11 -2.39 -0.01 1.17 16 40 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.12 1.30 4.80 -2.39 -0.01 1.29 16 44 H 0.09 1.47 6.70 -2.38 -0.02 1.46 16 45 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.05 1.85 7.11 -2.39 -0.02 1.83 16 49 H 0.09 2.86 6.78 -2.39 -0.02 2.84 16 50 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.01 0.80 7.63 -2.39 -0.02 0.78 16 52 H 0.01 0.46 7.31 -2.39 -0.02 0.45 16 53 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -78.42 377.00 3.99 -74.43 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.90 Total: 15.12 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 5.41 Total: 6.76 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -3.15 Total: -110.18 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -1.19 Total: -34.86 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -78.42 3.99 -74.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049480905.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.612 kcal (2) G-P(sol) polarization free energy of solvation -78.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds