Wall clock time and date at job start Tue Mar 31 2020 19:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 C 1.52998 * 109.47571 * 120.00184 * 2 1 3 5 5 H 1.09003 * 110.53702 * 307.08822 * 4 2 1 6 6 C 1.54800 * 110.49113 * 184.46620 * 4 2 1 7 7 C 1.54998 * 102.09432 * 220.44497 * 6 4 2 8 8 O 1.44380 * 103.49176 * 37.01983 * 7 6 4 9 9 C 1.43744 * 106.97522 * 319.94514 * 8 7 6 10 10 H 1.09005 * 109.87784 * 266.93449 * 9 8 7 11 11 C 1.50703 * 109.87993 * 145.93729 * 9 8 7 12 12 O 1.21281 * 119.99325 * 314.77785 * 11 9 8 13 13 N 1.34769 * 120.00234 * 134.77858 * 11 9 8 14 14 C 1.46802 * 119.57638 * 354.88212 * 13 11 9 15 15 C 1.53459 * 107.65106 * 127.89515 * 14 13 11 16 16 C 1.52206 * 109.22527 * 56.75423 * 15 14 13 17 17 C 1.53008 * 111.63420 * 298.05178 * 16 15 14 18 18 H 1.09003 * 111.38513 * 289.96779 * 17 16 15 19 19 C 1.45116 * 119.57775 * 174.85759 * 13 11 9 20 20 H 1.09005 * 109.97049 * 349.00635 * 19 13 11 21 21 C 1.54428 * 111.60557 * 111.36996 * 19 13 11 22 22 C 1.55471 * 102.03220 * 155.94943 * 21 19 13 23 23 N 1.47121 * 107.60134 * 339.52062 * 22 21 19 24 24 C 1.36941 * 125.76681 * 176.64156 * 23 22 21 25 25 H 1.07994 * 119.99826 * 185.88036 * 24 23 22 26 26 C 1.38809 * 119.99802 * 5.88142 * 24 23 22 27 27 N 1.31620 * 120.00310 * 6.09868 * 26 24 23 28 28 Si 1.86805 * 119.99739 * 186.09904 * 26 24 23 29 29 H 1.48498 * 109.47047 * 84.99875 * 28 26 24 30 30 H 1.48504 * 109.47117 * 204.99542 * 28 26 24 31 31 H 1.48498 * 109.47473 * 324.99561 * 28 26 24 32 32 H 1.08999 * 109.47091 * 308.72951 * 1 2 3 33 33 H 1.08999 * 109.47621 * 68.73111 * 1 2 3 34 34 H 1.09006 * 109.47269 * 188.72859 * 1 2 3 35 35 H 1.09002 * 109.47047 * 240.00193 * 2 1 3 36 36 H 1.08994 * 109.47166 * 60.00405 * 3 2 1 37 37 H 1.09005 * 109.47119 * 180.02562 * 3 2 1 38 38 H 1.08998 * 109.47171 * 299.99945 * 3 2 1 39 39 H 1.08994 * 110.90901 * 102.24601 * 6 4 2 40 40 H 1.09002 * 110.94084 * 338.65019 * 6 4 2 41 41 H 1.09006 * 110.61379 * 278.52619 * 7 6 4 42 42 H 1.08998 * 110.75571 * 155.59240 * 7 6 4 43 43 H 1.09003 * 109.83514 * 247.45230 * 14 13 11 44 44 H 1.09004 * 109.83382 * 8.34120 * 14 13 11 45 45 H 1.09001 * 109.64445 * 177.79871 * 15 14 13 46 46 H 1.09003 * 109.64680 * 298.42450 * 15 14 13 47 47 H 1.08999 * 109.80424 * 176.78127 * 16 15 14 48 48 H 1.09006 * 107.73190 * 57.94743 * 16 15 14 49 49 H 1.08998 * 110.81103 * 274.81725 * 21 19 13 50 50 H 1.09000 * 110.80576 * 38.33950 * 21 19 13 51 51 H 1.08999 * 110.32331 * 219.65001 * 22 21 19 52 52 H 1.09003 * 109.23690 * 98.77092 * 22 21 19 53 53 H 0.96998 * 119.99944 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5872 -0.2990 2.1463 6 6 3.5837 -0.6379 1.3307 7 6 3.9604 -2.0602 1.8181 8 8 3.0139 -2.9115 1.1369 9 6 1.7476 -2.2315 1.1571 10 1 1.1683 -2.5526 2.0229 11 6 0.9855 -2.5298 -0.1083 12 8 1.5494 -2.4828 -1.1810 13 7 -0.3225 -2.8487 -0.0479 14 6 -0.9685 -3.0135 1.2600 15 6 -2.2244 -2.1317 1.2730 16 6 -3.1228 -2.5218 0.1079 17 6 -2.4319 -2.2938 -1.2381 18 1 -2.3188 -1.2310 -1.4518 19 6 -1.0744 -3.0244 -1.2766 20 1 -0.4869 -2.6750 -2.1258 21 6 -1.4827 -4.4987 -1.4876 22 6 -2.7245 -4.3619 -2.4129 23 7 -3.2395 -2.9915 -2.2665 24 6 -4.2877 -2.4517 -2.9632 25 1 -4.5288 -1.4050 -2.8507 26 6 -5.0401 -3.2499 -3.8138 27 7 -4.8246 -4.5474 -3.8609 28 14 -6.3586 -2.4823 -4.8917 29 1 -5.7415 -1.9761 -6.1440 30 1 -7.3839 -3.5042 -5.2231 31 1 -6.9987 -1.3565 -4.1651 32 1 -0.3633 0.6429 0.8017 33 1 -0.3634 0.3728 -0.9576 34 1 -0.3634 -1.0158 0.1560 35 1 1.8933 -0.5138 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 1.6766 1.9563 -0.8900 39 1 3.8949 0.1161 2.0535 40 1 4.0152 -0.4359 0.3503 41 1 3.8400 -2.1400 2.8986 42 1 4.9806 -2.3106 1.5273 43 1 -1.2477 -4.0570 1.4057 44 1 -0.2877 -2.6990 2.0510 45 1 -2.7521 -2.2596 2.2181 46 1 -1.9400 -1.0870 1.1472 47 1 -4.0442 -1.9404 0.1413 48 1 -3.3625 -3.5800 0.2134 49 1 -0.6817 -5.0567 -1.9725 50 1 -1.7616 -4.9624 -0.5414 51 1 -3.4926 -5.0794 -2.1242 52 1 -2.4237 -4.5365 -3.4459 53 1 -5.3502 -5.1051 -4.4556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049480909.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:02 Heat of formation + Delta-G solvation = -50.027120 kcal Electronic energy + Delta-G solvation = -32681.579913 eV Core-core repulsion = 28746.904367 eV Total energy + Delta-G solvation = -3934.675546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.55180 -40.59722 -38.86950 -36.95005 -36.58268 -34.23240 -33.74644 -31.84222 -31.33155 -30.35833 -29.56125 -27.99440 -26.57426 -25.91644 -24.54490 -23.29762 -22.90981 -22.12670 -21.67564 -20.75957 -19.36416 -18.75638 -18.60205 -17.59695 -17.55624 -16.82136 -16.52704 -16.07557 -16.03959 -15.65677 -15.28174 -15.07725 -14.99502 -14.82057 -14.60522 -14.29386 -14.08371 -13.84399 -13.64357 -13.47148 -13.23661 -13.13872 -13.04863 -12.82279 -12.68245 -12.57813 -12.55872 -12.28531 -12.24832 -12.10408 -12.03371 -11.94821 -11.83359 -11.60780 -11.52606 -11.44396 -11.37140 -11.11627 -11.01711 -10.73244 -10.24178 -9.46489 -8.89419 -7.84646 -5.21649 1.42572 1.44165 1.47137 1.54415 1.81323 2.48866 3.02663 3.31400 3.33949 3.45895 3.54124 3.62948 3.86392 3.88005 3.95895 3.98533 4.06028 4.11881 4.19843 4.26428 4.35389 4.36278 4.41208 4.42839 4.53593 4.62730 4.66829 4.70854 4.78143 4.78684 4.81773 4.84693 4.88926 4.94586 4.98320 5.02682 5.05485 5.10613 5.20248 5.23930 5.32117 5.36134 5.39196 5.47535 5.50355 5.54276 5.60187 5.63152 5.74002 5.84471 6.17417 6.38202 7.07123 7.12709 7.74149 8.40177 9.24780 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019939 B = 0.003476 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.927659 B = 8052.348884 C = 8442.881859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 C -0.138 4.138 4 C -0.096 4.096 5 H 0.127 0.873 6 C -0.143 4.143 7 C 0.039 3.961 8 O -0.388 6.388 9 C 0.059 3.941 10 H 0.124 0.876 11 C 0.521 3.479 12 O -0.570 6.570 13 N -0.588 5.588 14 C 0.092 3.908 15 C -0.128 4.128 16 C -0.120 4.120 17 C 0.158 3.842 18 H 0.052 0.948 19 C 0.149 3.851 20 H 0.063 0.937 21 C -0.136 4.136 22 C 0.191 3.809 23 N -0.616 5.616 24 C -0.236 4.236 25 H 0.081 0.919 26 C -0.064 4.064 27 N -0.949 5.949 28 Si 0.975 3.025 29 H -0.290 1.290 30 H -0.294 1.294 31 H -0.266 1.266 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.116 0.884 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.127 0.873 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.050 0.950 48 H 0.045 0.955 49 H 0.062 0.938 50 H 0.083 0.917 51 H 0.028 0.972 52 H -0.008 1.008 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.120 9.074 20.692 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.126 4.126 3 C -0.195 4.195 4 C -0.114 4.114 5 H 0.145 0.855 6 C -0.181 4.181 7 C -0.036 4.036 8 O -0.307 6.307 9 C -0.001 4.001 10 H 0.141 0.859 11 C 0.311 3.689 12 O -0.449 6.449 13 N -0.321 5.321 14 C -0.028 4.028 15 C -0.166 4.166 16 C -0.160 4.160 17 C 0.051 3.949 18 H 0.070 0.930 19 C 0.043 3.957 20 H 0.081 0.919 21 C -0.175 4.175 22 C 0.065 3.935 23 N -0.341 5.341 24 C -0.365 4.365 25 H 0.099 0.901 26 C -0.257 4.257 27 N -0.598 5.598 28 Si 0.804 3.196 29 H -0.217 1.217 30 H -0.221 1.221 31 H -0.191 1.191 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.134 0.866 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.144 0.856 45 H 0.126 0.874 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.101 0.899 51 H 0.046 0.954 52 H 0.010 0.990 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.294 8.811 19.884 26.588 hybrid contribution -1.103 -0.015 -1.814 2.123 sum 14.191 8.796 18.069 24.602 Atomic orbital electron populations 1.22728 0.95377 1.05365 1.01220 1.21414 0.95919 0.97568 0.97671 1.21792 1.01271 0.94413 1.02012 1.22588 0.97503 0.91169 1.00187 0.85507 1.23240 0.93565 0.98385 1.02885 1.23898 0.93474 0.88443 0.97797 1.88930 1.19051 1.43529 1.79231 1.23178 0.87065 0.94935 0.94938 0.85855 1.20944 0.81716 0.74789 0.91495 1.90646 1.68746 1.52602 1.32883 1.47745 1.08845 1.68089 1.07409 1.22387 0.95631 1.01611 0.83181 1.21925 0.95464 1.00355 0.98865 1.21792 0.98755 1.01017 0.94457 1.21461 0.89026 0.94694 0.89721 0.93011 1.21210 0.92098 0.95561 0.86782 0.91861 1.23067 0.97584 0.96320 1.00544 1.21003 0.91456 0.86700 0.94325 1.44902 1.34866 1.10216 1.44097 1.19369 1.04860 0.93886 1.18415 0.90080 1.25611 1.01944 0.95997 1.02160 1.70163 1.43938 1.04176 1.41533 0.85141 0.78421 0.77274 0.78784 1.21740 1.22070 1.19115 0.90591 0.95504 0.89203 0.92824 0.90790 0.91828 0.94053 0.86607 0.91870 0.88912 0.88187 0.90105 0.85588 0.87444 0.90515 0.93156 0.93576 0.91912 0.89865 0.95423 0.98953 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.54 7.86 71.98 0.57 -3.97 16 2 C -0.11 -2.41 1.91 -10.80 -0.02 -2.43 16 3 C -0.14 -2.43 8.88 71.98 0.64 -1.79 16 4 C -0.10 -1.55 2.62 -9.81 -0.03 -1.58 16 5 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 6 C -0.14 -1.94 5.62 31.89 0.18 -1.76 16 7 C 0.04 0.56 7.72 72.67 0.56 1.13 16 8 O -0.39 -9.48 11.07 -136.28 -1.51 -10.99 16 9 C 0.06 1.25 3.38 30.22 0.10 1.35 16 10 H 0.12 1.71 5.23 -2.38 -0.01 1.70 16 11 C 0.52 15.87 4.00 87.66 0.35 16.22 16 12 O -0.57 -23.13 14.25 9.67 0.14 -23.00 16 13 N -0.59 -16.96 1.38 -794.38 -1.09 -18.06 16 14 C 0.09 1.81 5.64 86.48 0.49 2.29 16 15 C -0.13 -2.64 5.75 30.49 0.18 -2.46 16 16 C -0.12 -3.96 5.08 30.33 0.15 -3.81 16 17 C 0.16 6.40 3.39 45.08 0.15 6.55 16 18 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.15 5.70 2.83 46.15 0.13 5.83 16 20 H 0.06 2.88 6.99 -2.38 -0.02 2.86 16 21 C -0.14 -5.47 6.19 31.93 0.20 -5.27 16 22 C 0.19 9.83 5.22 87.11 0.45 10.28 16 23 N -0.62 -31.90 2.91 -665.26 -1.94 -33.84 16 24 C -0.24 -13.35 10.28 84.03 0.86 -12.49 16 25 H 0.08 4.39 7.84 -2.91 -0.02 4.36 16 26 C -0.06 -3.69 5.46 84.86 0.46 -3.23 16 27 N -0.95 -58.10 10.46 21.65 0.23 -57.88 16 28 Si 0.98 46.56 29.56 68.60 2.03 48.58 16 29 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 30 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 31 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 32 H 0.08 1.39 8.13 -2.39 -0.02 1.37 16 33 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 2.24 1.18 -2.38 0.00 2.24 16 35 H 0.05 1.71 5.70 -2.39 -0.01 1.70 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 0.99 6.77 -2.38 -0.02 0.97 16 38 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 1.12 7.27 -2.39 -0.02 1.10 16 41 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.08 1.54 7.53 -2.39 -0.02 1.52 16 44 H 0.13 1.46 5.03 -2.39 -0.01 1.45 16 45 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.08 1.52 6.13 -2.39 -0.01 1.50 16 47 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.05 1.66 7.21 -2.38 -0.02 1.64 16 49 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 50 H 0.08 2.96 6.89 -2.39 -0.02 2.94 16 51 H 0.03 1.57 7.16 -2.39 -0.02 1.55 16 52 H -0.01 -0.46 7.78 -2.39 -0.02 -0.48 16 53 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -77.38 377.47 4.18 -73.20 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.90 Total: 17.12 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 5.43 Total: 4.86 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -2.80 Total: -109.78 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -1.37 Total: -33.99 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -77.38 4.18 -73.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049480909.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.172 kcal (2) G-P(sol) polarization free energy of solvation -77.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds