Wall clock time and date at job start Tue Mar 31 2020 21:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47401 * 2 1 4 4 H 1.08996 * 110.01439 * 53.60990 * 3 2 1 5 5 C 1.54268 * 110.03072 * 292.17140 * 3 2 1 6 6 C 1.55027 * 104.27889 * 217.19529 * 5 3 2 7 7 C 1.54892 * 102.68510 * 37.76816 * 6 5 3 8 8 C 1.53876 * 110.03392 * 175.00576 * 3 2 1 9 9 C 1.53003 * 110.03128 * 359.97438 * 8 3 2 10 10 C 1.50696 * 110.07024 * 238.59488 * 8 3 2 11 11 O 1.21282 * 120.00259 * 4.30155 * 10 8 3 12 12 N 1.34777 * 120.00165 * 184.31042 * 10 8 3 13 13 C 1.47133 * 121.05211 * 4.94888 * 12 10 8 14 14 C 1.52762 * 108.97914 * 232.17572 * 13 12 10 15 15 O 1.43107 * 109.42087 * 306.12288 * 14 13 12 16 16 C 1.42492 * 113.97091 * 59.82889 * 15 14 13 17 17 C 1.53464 * 113.76269 * 73.17479 * 16 15 14 18 18 N 1.47662 * 85.97404 * 91.28650 * 17 16 15 19 19 C 1.36938 * 134.45621 * 204.27562 * 18 17 16 20 20 H 1.08005 * 119.99563 * 180.02562 * 19 18 17 21 21 C 1.38806 * 120.00370 * 0.02562 * 19 18 17 22 22 N 1.31621 * 119.99796 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00389 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47371 * 59.99654 * 23 21 19 25 25 H 1.48495 * 109.47294 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46992 * 299.99732 * 23 21 19 27 27 C 1.47674 * 91.08900 * 24.29138 * 18 17 16 28 28 C 1.47345 * 121.05929 * 185.23991 * 12 10 8 29 29 H 1.09001 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46638 * 299.99633 * 1 2 3 31 31 H 1.08996 * 109.47276 * 59.99677 * 1 2 3 32 32 H 1.09006 * 109.46835 * 240.00281 * 2 1 3 33 33 H 1.08996 * 109.47643 * 120.00723 * 2 1 3 34 34 H 1.08999 * 110.49257 * 335.78454 * 5 3 2 35 35 H 1.09003 * 110.48373 * 98.42871 * 5 3 2 36 36 H 1.09001 * 110.70122 * 279.51432 * 6 5 3 37 37 H 1.09002 * 110.87646 * 156.10639 * 6 5 3 38 38 H 1.09003 * 110.48349 * 203.48392 * 7 6 5 39 39 H 1.08997 * 110.48485 * 80.96714 * 7 6 5 40 40 H 1.09002 * 109.46845 * 182.50237 * 9 8 3 41 41 H 1.09003 * 109.46681 * 302.50339 * 9 8 3 42 42 H 1.09001 * 109.46824 * 62.50057 * 9 8 3 43 43 H 1.09002 * 109.59258 * 352.00767 * 13 12 10 44 44 H 1.08999 * 109.59188 * 112.45818 * 13 12 10 45 45 H 1.09001 * 109.56641 * 186.06686 * 14 13 12 46 46 H 1.09001 * 109.35778 * 66.05165 * 14 13 12 47 47 H 1.09003 * 113.79335 * 205.55208 * 17 16 15 48 48 H 1.09003 * 113.79565 * 337.01552 * 17 16 15 49 49 H 0.97002 * 120.00263 * 179.97438 * 22 21 19 50 50 H 1.09000 * 113.79176 * 221.44318 * 27 18 17 51 51 H 1.08994 * 113.79193 * 89.96772 * 27 18 17 52 52 H 1.08995 * 109.74452 * 251.23670 * 28 12 10 53 53 H 1.08995 * 109.74452 * 11.90875 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5916 1.9967 0.8244 5 6 1.7006 2.1230 -1.3422 6 6 2.9301 3.0197 -1.6380 7 6 4.1125 2.1495 -1.1442 8 6 3.5736 1.4593 0.1259 9 6 4.1081 0.0283 0.2122 10 6 3.9835 2.2372 1.3497 11 8 3.1385 2.6696 2.1046 12 7 5.2892 2.4527 1.6052 13 6 6.3284 2.0337 0.6516 14 6 7.3704 1.1948 1.3892 15 8 7.8562 1.9257 2.5196 16 6 6.8457 2.2728 3.4624 17 6 6.3420 1.0855 4.2942 18 7 7.3912 1.4549 5.2654 19 6 8.0836 0.7774 6.2332 20 1 8.8234 1.2922 6.8283 21 6 7.8348 -0.5710 6.4494 22 7 6.9337 -1.1985 5.7238 23 14 8.7789 -1.4950 7.7701 24 1 8.5246 -0.8670 9.0915 25 1 8.3311 -2.9106 7.7999 26 1 10.2320 -1.4423 7.4684 27 6 7.3943 2.8478 4.7750 28 6 5.7216 3.1096 2.8512 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.5771 1.3773 -2.1276 35 1 0.7999 2.7292 -1.2454 36 1 2.8731 3.9503 -1.0733 37 1 3.0171 3.2196 -2.7060 38 1 4.9719 2.7751 -0.9029 39 1 4.3807 1.4080 -1.8967 40 1 5.1897 0.0519 0.3457 41 1 3.6484 -0.4807 1.0595 42 1 3.8670 -0.5057 -0.7069 43 1 5.8773 1.4385 -0.1424 44 1 6.8083 2.9139 0.2239 45 1 8.1993 0.9695 0.7181 46 1 6.9126 0.2649 1.7267 47 1 5.3278 1.2127 4.6729 48 1 6.5025 0.1170 3.8205 49 1 6.7600 -2.1408 5.8746 50 1 8.3909 3.2796 4.6834 51 1 6.6931 3.4992 5.2966 52 1 6.0871 4.1126 2.6310 53 1 4.8845 3.1673 3.5468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053307491.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:13 Heat of formation + Delta-G solvation = -36.243649 kcal Electronic energy + Delta-G solvation = -32088.290860 eV Core-core repulsion = 28154.213010 eV Total energy + Delta-G solvation = -3934.077850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.31324 -40.88631 -38.71461 -37.84839 -35.93132 -34.36854 -33.99573 -32.77686 -31.28999 -29.50201 -28.56721 -27.82112 -26.89762 -26.15417 -24.70060 -24.41298 -23.39108 -22.09797 -20.98252 -20.30274 -19.33562 -18.85214 -17.77809 -17.59336 -17.28788 -16.95985 -16.60092 -16.05515 -15.84920 -15.77932 -15.57898 -15.40646 -15.03437 -14.88599 -14.75075 -14.54791 -14.20105 -14.09298 -13.90642 -13.54484 -13.34202 -13.16937 -12.98828 -12.87049 -12.75260 -12.58621 -12.44274 -12.15743 -12.06957 -12.04036 -11.88999 -11.82604 -11.68164 -11.63593 -11.54307 -11.37884 -11.25465 -11.14287 -10.97943 -10.82470 -10.52547 -9.55193 -8.97741 -7.93161 -5.28055 1.42170 1.46729 1.52579 1.56876 1.86194 2.43920 2.62376 3.23409 3.30803 3.37101 3.49843 3.60786 3.61112 3.76776 3.88977 4.06304 4.08222 4.17464 4.26767 4.32161 4.37980 4.43008 4.45802 4.46846 4.57017 4.58702 4.61263 4.66436 4.76673 4.77600 4.79692 4.81873 4.89151 4.91641 4.95023 4.96926 5.03743 5.08740 5.12331 5.17572 5.20428 5.26763 5.28182 5.29535 5.37860 5.42338 5.44283 5.50050 5.62763 5.85713 6.30428 6.36875 6.85772 7.11096 7.55792 8.48933 9.23276 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.003414 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.124962 B = 8200.093902 C = 8983.447285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.084 4.084 4 H 0.058 0.942 5 C -0.110 4.110 6 C -0.123 4.123 7 C -0.119 4.119 8 C -0.075 4.075 9 C -0.149 4.149 10 C 0.521 3.479 11 O -0.584 6.584 12 N -0.610 5.610 13 C 0.066 3.934 14 C 0.037 3.963 15 O -0.360 6.360 16 C 0.080 3.920 17 C 0.154 3.846 18 N -0.633 5.633 19 C -0.237 4.237 20 H 0.087 0.913 21 C -0.067 4.067 22 N -0.956 5.956 23 Si 0.983 3.017 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.273 1.273 27 C 0.133 3.867 28 C 0.108 3.892 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.103 0.897 43 H 0.135 0.865 44 H 0.102 0.898 45 H 0.136 0.864 46 H 0.033 0.967 47 H 0.004 0.996 48 H 0.042 0.958 49 H 0.248 0.752 50 H 0.068 0.932 51 H 0.068 0.932 52 H 0.096 0.904 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.883 6.232 -22.349 24.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.103 4.103 4 H 0.076 0.924 5 C -0.147 4.147 6 C -0.161 4.161 7 C -0.156 4.156 8 C -0.078 4.078 9 C -0.206 4.206 10 C 0.311 3.689 11 O -0.464 6.464 12 N -0.342 5.342 13 C -0.056 4.056 14 C -0.040 4.040 15 O -0.279 6.279 16 C 0.038 3.962 17 C 0.028 3.972 18 N -0.360 5.360 19 C -0.365 4.365 20 H 0.104 0.896 21 C -0.260 4.260 22 N -0.605 5.605 23 Si 0.810 3.190 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.199 1.199 27 C 0.008 3.992 28 C -0.016 4.016 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.122 0.878 43 H 0.152 0.848 44 H 0.120 0.880 45 H 0.154 0.846 46 H 0.052 0.948 47 H 0.022 0.978 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.114 0.886 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.022 6.247 -21.733 23.678 hybrid contribution -0.086 -0.801 1.775 1.949 sum -7.109 5.446 -19.958 21.875 Atomic orbital electron populations 1.21785 0.95573 1.01818 1.01644 1.21746 0.96109 0.95316 1.02127 1.21822 0.91832 0.97348 0.99306 0.92399 1.22435 0.97953 0.98710 0.95599 1.22521 0.94291 0.97359 1.01909 1.22833 0.98640 0.99719 0.94451 1.21442 0.97776 0.95879 0.92704 1.22267 1.01178 0.93410 1.03721 1.21282 0.81174 0.78837 0.87635 1.90621 1.51144 1.53185 1.51497 1.48181 1.06211 1.59416 1.20407 1.22982 0.88872 1.01306 0.92417 1.23153 0.99264 0.93728 0.87818 1.87885 1.32603 1.74563 1.32809 1.23143 0.88732 0.95362 0.88918 1.22475 0.89821 0.96571 0.88319 1.46163 1.42443 1.06178 1.41191 1.19417 1.14719 0.92241 1.10105 0.89565 1.25667 1.00521 0.97450 1.02338 1.70028 1.37219 1.09541 1.43681 0.85093 0.78217 0.77025 0.78637 1.20289 1.21951 1.19907 1.22714 1.00022 0.87863 0.88589 1.21983 0.96525 0.96439 0.86691 0.92143 0.94507 0.91350 0.89520 0.93641 0.89287 0.91977 0.93482 0.88757 0.90278 0.87140 0.91592 0.93888 0.87845 0.84775 0.87987 0.84649 0.94811 0.97803 0.93949 0.94354 0.91391 0.91442 0.88607 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.77 71.98 0.70 -1.98 16 2 C -0.12 -2.24 4.11 30.59 0.13 -2.11 16 3 C -0.08 -1.84 2.53 -10.07 -0.03 -1.87 16 4 H 0.06 1.74 6.41 -2.39 -0.02 1.73 16 5 C -0.11 -1.69 5.53 31.72 0.18 -1.51 16 6 C -0.12 -1.76 6.92 31.93 0.22 -1.54 16 7 C -0.12 -1.69 4.49 31.67 0.14 -1.54 16 8 C -0.07 -1.63 0.61 -52.20 -0.03 -1.66 16 9 C -0.15 -3.02 6.90 71.98 0.50 -2.52 16 10 C 0.52 16.23 6.48 87.66 0.57 16.80 16 11 O -0.58 -23.43 14.75 -3.04 -0.04 -23.47 16 12 N -0.61 -17.82 3.02 -818.73 -2.47 -20.29 16 13 C 0.07 1.40 3.99 86.18 0.34 1.74 16 14 C 0.04 1.04 6.66 71.90 0.48 1.52 16 15 O -0.36 -13.59 10.52 -148.98 -1.57 -15.16 16 16 C 0.08 3.20 1.21 -10.49 -0.01 3.19 16 17 C 0.15 7.96 6.65 86.31 0.57 8.53 16 18 N -0.63 -34.63 3.70 -729.26 -2.70 -37.33 16 19 C -0.24 -13.95 10.70 84.03 0.90 -13.05 16 20 H 0.09 4.81 7.83 -2.91 -0.02 4.78 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 22 N -0.96 -60.14 11.39 21.65 0.25 -59.90 16 23 Si 0.98 47.25 29.55 68.60 2.03 49.27 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 27 C 0.13 5.67 8.33 86.30 0.72 6.39 16 28 C 0.11 3.61 5.76 86.18 0.50 4.11 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.00 7.51 -2.39 -0.02 0.98 16 32 H 0.09 1.25 6.97 -2.38 -0.02 1.23 16 33 H 0.04 1.08 6.36 -2.39 -0.02 1.07 16 34 H 0.09 1.00 7.76 -2.39 -0.02 0.98 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 1.10 5.48 -2.39 -0.01 1.09 16 39 H 0.11 0.94 7.80 -2.39 -0.02 0.92 16 40 H 0.07 1.33 4.73 -2.39 -0.01 1.32 16 41 H 0.04 1.11 6.46 -2.39 -0.02 1.09 16 42 H 0.10 1.40 6.96 -2.39 -0.02 1.39 16 43 H 0.13 2.09 3.21 -2.39 -0.01 2.09 16 44 H 0.10 1.71 8.06 -2.39 -0.02 1.69 16 45 H 0.14 2.81 8.14 -2.39 -0.02 2.79 16 46 H 0.03 1.13 6.72 -2.39 -0.02 1.12 16 47 H 0.00 0.24 7.94 -2.39 -0.02 0.22 16 48 H 0.04 2.45 6.30 -2.39 -0.02 2.43 16 49 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 50 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 51 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 52 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 53 H 0.08 2.97 6.96 -2.39 -0.02 2.95 16 Total: -1.00 -79.40 385.39 2.73 -76.67 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.90 Total: 19.22 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 6.34 Total: 10.98 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -4.92 Total: -117.51 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.61 Total: -38.63 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -79.40 2.73 -76.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053307491.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.421 kcal (2) G-P(sol) polarization free energy of solvation -79.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds