Wall clock time and date at job start Tue Mar 31 2020 20:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47072 * 2 1 4 4 C 1.53000 * 109.47125 * 119.99955 * 2 1 3 5 5 C 1.50704 * 109.47177 * 177.84883 * 4 2 1 6 6 O 1.21283 * 119.99606 * 4.48328 * 5 4 2 7 7 N 1.34774 * 120.00404 * 184.49045 * 5 4 2 8 8 C 1.46943 * 120.69701 * 359.97438 * 7 5 4 9 9 C 1.53188 * 108.92778 * 125.84835 * 8 7 5 10 10 C 1.53171 * 109.27619 * 55.21532 * 9 8 7 11 11 C 1.52241 * 109.64964 * 299.82317 * 10 9 8 12 12 C 1.54478 * 110.29651 * 182.00117 * 11 10 9 13 13 C 1.55028 * 101.53033 * 153.34673 * 12 11 10 14 14 N 1.47498 * 104.90511 * 323.65855 * 13 12 11 15 15 C 1.36933 * 125.66094 * 204.03422 * 14 13 12 16 16 H 1.07999 * 119.99906 * 164.53029 * 15 14 13 17 17 C 1.38818 * 120.00100 * 344.52862 * 15 14 13 18 18 N 1.31619 * 119.99788 * 158.46093 * 17 15 14 19 19 Si 1.86795 * 119.99956 * 338.46595 * 17 15 14 20 20 H 1.48498 * 109.47334 * 84.83888 * 19 17 15 21 21 H 1.48502 * 109.47195 * 204.84347 * 19 17 15 22 22 H 1.48503 * 109.47129 * 324.83824 * 19 17 15 23 23 C 1.47184 * 108.67158 * 24.01276 * 14 13 12 24 24 C 1.47074 * 120.70650 * 179.72143 * 7 5 4 25 25 C 1.53004 * 109.47307 * 240.00239 * 2 1 3 26 26 C 1.52999 * 117.50305 * 128.74473 * 25 2 1 27 27 C 1.52999 * 117.49714 * 60.08277 * 25 2 1 28 28 H 1.08997 * 109.46861 * 303.93951 * 1 2 3 29 29 H 1.08997 * 109.47182 * 63.94374 * 1 2 3 30 30 H 1.09004 * 109.47033 * 183.93660 * 1 2 3 31 31 H 0.96700 * 113.99866 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46948 * 57.85469 * 4 2 1 33 33 H 1.08992 * 109.47465 * 297.84614 * 4 2 1 34 34 H 1.09002 * 109.55943 * 245.68026 * 8 7 5 35 35 H 1.09000 * 109.56090 * 6.01423 * 8 7 5 36 36 H 1.08994 * 109.50035 * 175.15171 * 9 8 7 37 37 H 1.08999 * 109.50625 * 295.27292 * 9 8 7 38 38 H 1.09000 * 109.44315 * 59.87722 * 10 9 8 39 39 H 1.09002 * 109.44005 * 179.80864 * 10 9 8 40 40 H 1.08992 * 111.01371 * 271.41066 * 12 11 10 41 41 H 1.08998 * 111.01100 * 35.28452 * 12 11 10 42 42 H 1.08996 * 110.35272 * 204.80281 * 13 12 11 43 43 H 1.08998 * 110.44355 * 82.56202 * 13 12 11 44 44 H 0.96999 * 119.99339 * 179.97438 * 18 17 15 45 45 H 1.09003 * 109.90763 * 239.09350 * 23 14 13 46 46 H 1.09000 * 109.90537 * 117.83512 * 23 14 13 47 47 H 1.09005 * 109.57704 * 352.25565 * 24 7 5 48 48 H 1.09004 * 109.58026 * 112.64756 * 24 7 5 49 49 H 1.09008 * 115.54730 * 274.41723 * 25 2 1 50 50 H 1.09001 * 117.49211 * 0.02562 * 26 25 2 51 51 H 1.08999 * 117.49941 * 145.01619 * 26 25 2 52 52 H 1.09008 * 117.49970 * 214.97833 * 27 25 2 53 53 H 1.08997 * 117.50110 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5461 -0.7676 1.2229 6 8 4.1547 -0.2025 0.3391 7 7 4.2166 -1.4371 2.1813 8 6 3.4947 -2.1268 3.2594 9 6 3.9472 -3.5897 3.3038 10 6 5.4710 -3.6434 3.4499 11 6 6.1239 -2.9496 2.2624 12 6 7.6624 -3.0389 2.3691 13 6 8.0819 -2.9541 0.8791 14 7 7.0363 -3.6941 0.1479 15 6 7.1854 -4.2838 -1.0789 16 1 6.4598 -5.0061 -1.4227 17 6 8.2693 -3.9533 -1.8808 18 7 8.6618 -4.7772 -2.8291 19 14 9.1708 -2.3392 -1.6137 20 1 10.1897 -2.5118 -0.5473 21 1 9.8391 -1.9308 -2.8754 22 1 8.2003 -1.2917 -1.2061 23 6 5.8062 -3.6939 0.9561 24 6 5.6861 -1.4975 2.1671 25 6 2.0400 -0.7212 -1.2493 26 6 3.0763 0.0040 -2.1102 27 6 1.6374 -0.1483 -2.6096 28 1 -0.3633 0.5738 0.8526 29 1 -0.3633 0.4514 -0.9232 30 1 -0.3633 -1.0253 0.0706 31 1 2.9703 1.4236 -0.0004 32 1 1.6456 -1.7372 1.2687 33 1 1.7086 -0.1857 2.1388 34 1 3.7170 -1.6470 4.2126 35 1 2.4227 -2.0821 3.0676 36 1 3.4824 -4.0887 4.1540 37 1 3.6522 -4.0901 2.3815 38 1 5.7652 -3.1400 4.3708 39 1 5.7956 -4.6834 3.4852 40 1 8.0641 -2.1996 2.9367 41 1 7.9693 -3.9881 2.8082 42 1 9.0535 -3.4254 0.7314 43 1 8.1112 -1.9153 0.5504 44 1 9.4189 -4.5460 -3.3896 45 1 5.5065 -4.7186 1.1761 46 1 5.0096 -3.1786 0.4195 47 1 6.0605 -1.0644 1.2395 48 1 6.0827 -0.9428 3.0176 49 1 2.1253 -1.8047 -1.1647 50 1 3.3950 0.9947 -1.7862 51 1 3.8432 -0.6023 -2.5922 52 1 1.4582 -0.8547 -3.4202 53 1 1.0088 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054120442.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:33 Heat of formation + Delta-G solvation = -54.897668 kcal Electronic energy + Delta-G solvation = -32317.197615 eV Core-core repulsion = 28382.310867 eV Total energy + Delta-G solvation = -3934.886749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.88342 -40.66097 -39.01309 -37.33875 -35.92974 -34.93083 -33.59679 -33.00801 -32.27181 -30.38986 -29.32081 -27.69211 -26.30393 -25.32795 -24.22568 -23.22713 -23.09770 -22.54108 -21.18046 -20.40558 -19.33567 -18.91516 -18.25538 -17.72670 -17.32866 -17.22378 -16.83028 -16.49153 -16.07180 -15.49992 -15.41353 -15.20711 -15.16200 -14.67930 -14.47441 -14.08897 -13.98790 -13.91223 -13.76213 -13.64570 -13.45569 -13.26803 -13.18995 -13.03465 -12.90954 -12.86361 -12.62818 -12.28430 -12.22413 -12.08755 -11.97468 -11.87487 -11.72512 -11.62135 -11.41253 -11.36100 -11.14241 -11.06794 -10.88517 -10.76738 -10.47136 -9.54007 -9.11409 -8.24012 -5.47738 1.18659 1.31132 1.39126 1.67969 2.05634 2.33214 2.87468 3.00470 3.29111 3.29665 3.49034 3.57308 3.71601 3.77500 3.78569 3.83246 4.03608 4.12152 4.13350 4.16106 4.22392 4.33504 4.37085 4.38520 4.51934 4.61839 4.64864 4.72189 4.73819 4.74889 4.75514 4.78928 4.84435 4.88858 4.91419 4.94770 4.98619 5.07275 5.11070 5.12648 5.18806 5.20150 5.23338 5.26171 5.36658 5.46338 5.47946 5.58604 5.60909 6.03019 6.47978 6.71170 6.71742 7.27904 7.49276 8.05803 8.96289 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.004896 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.114407 B = 5717.393684 C = 7361.696089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.175 3.825 3 O -0.574 6.574 4 C -0.156 4.156 5 C 0.502 3.498 6 O -0.573 6.573 7 N -0.607 5.607 8 C 0.102 3.898 9 C -0.135 4.135 10 C -0.096 4.096 11 C -0.073 4.073 12 C -0.106 4.106 13 C 0.096 3.904 14 N -0.627 5.627 15 C -0.230 4.230 16 H 0.056 0.944 17 C -0.036 4.036 18 N -0.957 5.957 19 Si 0.946 3.054 20 H -0.264 1.264 21 H -0.309 1.309 22 H -0.283 1.283 23 C 0.157 3.843 24 C 0.133 3.867 25 C -0.171 4.171 26 C -0.164 4.164 27 C -0.163 4.163 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.381 0.619 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.039 0.961 43 H 0.014 0.986 44 H 0.262 0.738 45 H 0.028 0.972 46 H 0.005 0.995 47 H 0.048 0.952 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.090 0.910 51 H 0.056 0.944 52 H 0.093 0.907 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.551 8.303 19.420 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.134 3.866 3 O -0.385 6.385 4 C -0.196 4.196 5 C 0.292 3.708 6 O -0.453 6.453 7 N -0.340 5.340 8 C -0.019 4.019 9 C -0.173 4.173 10 C -0.134 4.134 11 C -0.075 4.075 12 C -0.145 4.145 13 C -0.028 4.028 14 N -0.354 5.354 15 C -0.358 4.358 16 H 0.074 0.926 17 C -0.230 4.230 18 N -0.605 5.605 19 Si 0.776 3.224 20 H -0.189 1.189 21 H -0.238 1.238 22 H -0.209 1.209 23 C 0.032 3.968 24 C 0.009 3.991 25 C -0.190 4.190 26 C -0.201 4.201 27 C -0.200 4.200 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.234 0.766 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.066 0.934 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.032 0.968 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.023 0.977 47 H 0.067 0.933 48 H 0.110 0.890 49 H 0.107 0.893 50 H 0.108 0.892 51 H 0.074 0.926 52 H 0.112 0.888 53 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.775 8.658 18.785 27.272 hybrid contribution 1.862 0.131 -1.358 2.308 sum -15.913 8.789 17.427 25.183 Atomic orbital electron populations 1.21752 0.89909 1.03809 1.03377 1.20537 0.95261 0.80973 0.89820 1.86369 1.28701 1.26706 1.96732 1.22501 0.90257 1.05090 1.01729 1.21295 0.91275 0.77947 0.80267 1.90658 1.70969 1.47158 1.36502 1.48238 1.06379 1.52016 1.27319 1.22098 0.97596 0.92070 0.90115 1.21978 0.95628 0.96482 1.03166 1.21392 0.95373 1.00529 0.96069 1.21274 0.95771 0.95183 0.95251 1.22711 0.94228 1.03853 0.93666 1.22148 0.92688 0.94082 0.93913 1.44991 1.09124 1.63657 1.17606 1.18588 1.08594 1.15872 0.92792 0.92572 1.25481 0.99248 1.01077 0.97204 1.69945 1.28784 1.36749 1.25036 0.86000 0.78542 0.82172 0.75666 1.18924 1.23769 1.20903 1.21342 0.87595 0.96889 0.90942 1.21225 0.80510 0.95234 1.02084 1.22935 1.04189 0.98638 0.93190 1.22528 0.92048 1.01576 1.03957 1.23011 0.97302 1.03180 0.96509 0.90542 0.92040 0.89125 0.76625 0.85988 0.85310 0.88555 0.87422 0.87277 0.93427 0.88662 0.91565 0.87924 0.89489 0.94280 0.96803 0.92911 0.95445 0.97684 0.93344 0.89042 0.89270 0.89189 0.92559 0.88811 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.74 71.98 0.63 -1.40 16 2 C 0.18 3.80 0.92 -10.79 -0.01 3.79 16 3 O -0.57 -15.16 12.12 -131.67 -1.60 -16.76 16 4 C -0.16 -2.74 3.37 29.85 0.10 -2.64 16 5 C 0.50 13.22 7.20 87.66 0.63 13.85 16 6 O -0.57 -20.44 10.79 14.27 0.15 -20.28 16 7 N -0.61 -13.72 2.60 -820.80 -2.14 -15.86 16 8 C 0.10 1.28 6.33 86.36 0.55 1.82 16 9 C -0.13 -1.92 5.92 30.71 0.18 -1.74 16 10 C -0.10 -1.75 4.52 30.40 0.14 -1.62 16 11 C -0.07 -2.06 0.54 -52.05 -0.03 -2.09 16 12 C -0.11 -3.17 5.99 31.79 0.19 -2.98 16 13 C 0.10 4.24 4.38 86.88 0.38 4.62 16 14 N -0.63 -31.96 3.25 -692.46 -2.25 -34.21 16 15 C -0.23 -14.14 10.60 84.04 0.89 -13.25 16 16 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 17 C -0.04 -2.26 5.45 84.86 0.46 -1.80 16 18 N -0.96 -63.53 13.97 21.65 0.30 -63.23 16 19 Si 0.95 51.10 24.23 68.60 1.66 52.76 16 20 H -0.26 -13.07 6.41 99.48 0.64 -12.44 16 21 H -0.31 -16.77 7.11 99.48 0.71 -16.06 16 22 H -0.28 -15.51 6.42 99.48 0.64 -14.87 16 23 C 0.16 6.33 5.42 86.47 0.47 6.80 16 24 C 0.13 3.67 4.85 85.93 0.42 4.08 16 25 C -0.17 -4.69 4.03 -10.79 -0.04 -4.73 16 26 C -0.16 -5.44 8.01 30.62 0.25 -5.20 16 27 C -0.16 -4.26 9.63 30.62 0.29 -3.97 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.03 7.16 -2.39 -0.02 1.02 16 30 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.38 11.22 5.23 -74.06 -0.39 10.83 16 32 H 0.12 1.61 7.48 -2.39 -0.02 1.59 16 33 H 0.13 1.54 8.09 -2.39 -0.02 1.52 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.11 0.82 5.90 -2.39 -0.01 0.81 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.93 7.28 -2.39 -0.02 0.91 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.30 8.11 -2.39 -0.02 1.28 16 40 H 0.10 2.38 7.97 -2.39 -0.02 2.36 16 41 H 0.09 2.41 8.02 -2.39 -0.02 2.39 16 42 H 0.04 1.85 6.21 -2.39 -0.01 1.84 16 43 H 0.01 0.67 5.31 -2.39 -0.01 0.66 16 44 H 0.26 16.50 8.31 -92.71 -0.77 15.73 16 45 H 0.03 1.11 7.61 -2.39 -0.02 1.09 16 46 H 0.01 0.23 7.54 -2.39 -0.02 0.21 16 47 H 0.05 1.85 6.57 -2.38 -0.02 1.84 16 48 H 0.09 1.99 8.10 -2.38 -0.02 1.97 16 49 H 0.09 2.62 8.11 -2.38 -0.02 2.60 16 50 H 0.09 3.05 6.27 -2.39 -0.01 3.03 16 51 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 52 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 53 H 0.10 2.47 7.59 -2.39 -0.02 2.45 16 Total: -1.00 -82.26 384.74 2.00 -80.26 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.37 Total: 23.78 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 5.49 Total: -6.46 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -4.09 Total: -113.31 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -1.44 Total: -37.04 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 1.66 Total: 52.76 kcal Total: -82.26 2.00 -80.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054120442.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.366 kcal (2) G-P(sol) polarization free energy of solvation -82.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds