Wall clock time and date at job start Tue Mar 31 2020 20:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47441 * 2 1 4 4 C 1.53008 * 109.46716 * 120.00009 * 2 1 3 5 5 C 1.50699 * 109.46852 * 177.90551 * 4 2 1 6 6 O 1.21273 * 120.00312 * 5.49403 * 5 4 2 7 7 N 1.34776 * 119.99414 * 185.49582 * 5 4 2 8 8 C 1.46923 * 120.70732 * 359.97438 * 7 5 4 9 9 C 1.53190 * 108.93177 * 234.13920 * 8 7 5 10 10 C 1.53166 * 109.27653 * 304.78494 * 9 8 7 11 11 C 1.52239 * 109.65438 * 60.16610 * 10 9 8 12 12 C 1.54779 * 110.25941 * 177.82150 * 11 10 9 13 13 C 1.55028 * 101.63545 * 276.10318 * 12 11 10 14 14 N 1.47491 * 104.90446 * 323.75918 * 13 12 11 15 15 C 1.36936 * 125.66743 * 204.03128 * 14 13 12 16 16 H 1.07996 * 119.99869 * 179.97438 * 15 14 13 17 17 C 1.38808 * 119.99759 * 359.97438 * 15 14 13 18 18 N 1.31623 * 120.00129 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00199 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46905 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47197 * 119.99638 * 19 17 15 22 22 H 1.48499 * 109.47471 * 240.00320 * 19 17 15 23 23 C 1.47190 * 108.66920 * 24.01272 * 14 13 12 24 24 C 1.47087 * 120.69907 * 179.97438 * 7 5 4 25 25 C 1.52995 * 109.47059 * 239.99371 * 2 1 3 26 26 C 1.53006 * 117.49646 * 128.75237 * 25 2 1 27 27 C 1.52998 * 117.49768 * 60.09775 * 25 2 1 28 28 H 1.09003 * 109.47548 * 301.53003 * 1 2 3 29 29 H 1.09008 * 109.46711 * 61.52577 * 1 2 3 30 30 H 1.08996 * 109.47347 * 181.52862 * 1 2 3 31 31 H 0.96693 * 113.99898 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46930 * 57.89960 * 4 2 1 33 33 H 1.09008 * 109.46572 * 297.90304 * 4 2 1 34 34 H 1.09006 * 109.56168 * 114.30508 * 8 7 5 35 35 H 1.09001 * 109.56231 * 353.97492 * 8 7 5 36 36 H 1.09000 * 109.50668 * 184.84405 * 9 8 7 37 37 H 1.08997 * 109.53362 * 64.73945 * 9 8 7 38 38 H 1.09005 * 109.43872 * 300.11534 * 10 9 8 39 39 H 1.09001 * 109.41216 * 180.21017 * 10 9 8 40 40 H 1.09003 * 110.87811 * 158.04596 * 12 11 10 41 41 H 1.08998 * 111.06140 * 34.23682 * 12 11 10 42 42 H 1.08999 * 110.35673 * 204.90933 * 13 12 11 43 43 H 1.08998 * 110.44558 * 82.66126 * 13 12 11 44 44 H 0.96995 * 119.99951 * 179.97438 * 18 17 15 45 45 H 1.09004 * 109.91067 * 117.83379 * 23 14 13 46 46 H 1.09000 * 109.90731 * 238.90834 * 23 14 13 47 47 H 1.09001 * 109.57878 * 7.76594 * 24 7 5 48 48 H 1.08995 * 109.57914 * 247.36592 * 24 7 5 49 49 H 1.08994 * 115.55411 * 274.41937 * 25 2 1 50 50 H 1.09002 * 117.49539 * 359.97438 * 26 25 2 51 51 H 1.08997 * 117.50073 * 145.02046 * 26 25 2 52 52 H 1.09004 * 117.49803 * 214.97945 * 27 25 2 53 53 H 1.09007 * 117.49932 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5460 -0.7665 1.2237 6 8 4.1553 -0.1854 0.3509 7 7 4.2157 -1.4527 2.1708 8 6 3.4932 -2.1619 3.2355 9 6 4.0281 -1.6973 4.5937 10 6 5.5454 -1.9022 4.6366 11 6 6.2034 -1.0890 3.5306 12 6 7.7421 -1.2428 3.5953 13 6 8.1181 -0.1802 4.6597 14 7 7.1840 0.9372 4.4267 15 6 7.3992 2.2437 4.7756 16 1 6.6497 2.9907 4.5599 17 6 8.5808 2.6080 5.4064 18 7 9.4941 1.6975 5.6697 19 14 8.8748 4.3904 5.8817 20 1 7.7035 5.2097 5.4792 21 1 9.0635 4.4861 7.3516 22 1 10.0908 4.8924 5.1928 23 6 5.9822 0.4147 3.7565 24 6 5.6855 -1.5076 2.1603 25 6 2.0399 -0.7214 -1.2491 26 6 3.0764 0.0038 -2.1100 27 6 1.6375 -0.1484 -2.6095 28 1 -0.3634 0.5374 0.8759 29 1 -0.3633 0.4900 -0.9034 30 1 -0.3634 -1.0272 0.0274 31 1 2.9703 1.4235 0.0004 32 1 1.6461 -1.7375 1.2683 33 1 1.7075 -0.1861 2.1389 34 1 3.6490 -3.2355 3.1298 35 1 2.4288 -1.9374 3.1663 36 1 3.5597 -2.2790 5.3877 37 1 3.7996 -0.6407 4.7333 38 1 5.7729 -2.9587 4.4944 39 1 5.9278 -1.5757 5.6037 40 1 8.1967 -1.0093 2.6324 41 1 8.0223 -2.2430 3.9256 42 1 9.1471 0.1503 4.5185 43 1 7.9844 -0.5831 5.6636 44 1 10.3199 1.9521 6.1102 45 1 5.1076 0.5705 4.3881 46 1 5.8429 0.9173 2.7994 47 1 6.0710 -0.8272 1.4009 48 1 6.0115 -2.5244 1.9418 49 1 2.1252 -1.8047 -1.1646 50 1 3.3945 0.9949 -1.7865 51 1 3.8432 -0.6026 -2.5920 52 1 1.4583 -0.8549 -3.4201 53 1 1.0091 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054120444.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:42 Heat of formation + Delta-G solvation = -54.311023 kcal Electronic energy + Delta-G solvation = -31637.634842 eV Core-core repulsion = 27702.773532 eV Total energy + Delta-G solvation = -3934.861310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.79869 -40.55367 -38.94080 -37.18233 -35.87921 -34.87125 -33.29229 -32.93522 -31.97633 -30.34030 -29.04495 -27.44486 -26.35518 -25.31946 -24.10486 -23.24747 -23.03996 -22.15377 -21.02981 -20.29128 -19.24879 -18.91844 -18.22026 -17.68554 -17.23153 -16.91569 -16.55619 -16.31504 -16.04690 -15.81471 -15.19903 -15.15782 -14.90756 -14.50538 -14.29168 -14.05835 -13.87960 -13.76323 -13.61843 -13.39113 -13.31158 -13.19603 -13.01659 -12.85442 -12.79937 -12.73738 -12.26767 -12.22806 -12.20833 -12.12119 -12.00007 -11.88570 -11.70920 -11.56512 -11.35269 -11.28552 -11.15743 -11.01559 -10.76477 -10.71578 -10.42529 -9.50628 -8.89940 -7.81020 -5.24624 1.41798 1.43026 1.53423 1.69037 2.07125 2.45854 2.95710 3.27639 3.33859 3.50411 3.63905 3.66961 3.78951 3.83109 3.89065 3.97074 4.11519 4.13788 4.21506 4.23335 4.32656 4.42025 4.50161 4.55799 4.58564 4.64377 4.69327 4.75423 4.76796 4.80559 4.83536 4.86012 4.90493 4.92981 4.99342 5.01079 5.05530 5.17036 5.17288 5.23050 5.32472 5.32944 5.39032 5.40407 5.47336 5.52302 5.58102 5.65394 5.81160 6.28769 6.49820 6.75041 7.08836 7.27775 7.76081 8.40207 9.20699 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.003301 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.389907 B = 8479.419847 C = 9385.237236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.167 3.833 3 O -0.582 6.582 4 C -0.159 4.159 5 C 0.508 3.492 6 O -0.569 6.569 7 N -0.608 5.608 8 C 0.107 3.893 9 C -0.134 4.134 10 C -0.097 4.097 11 C -0.070 4.070 12 C -0.122 4.122 13 C 0.159 3.841 14 N -0.626 5.626 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.064 4.064 18 N -0.946 5.946 19 Si 0.978 3.022 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.289 1.289 23 C 0.157 3.843 24 C 0.139 3.861 25 C -0.168 4.168 26 C -0.161 4.161 27 C -0.169 4.169 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.381 0.619 32 H 0.135 0.865 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.066 0.934 43 H -0.009 1.009 44 H 0.248 0.752 45 H 0.017 0.983 46 H -0.004 1.004 47 H 0.062 0.938 48 H 0.090 0.910 49 H 0.110 0.890 50 H 0.077 0.923 51 H 0.081 0.919 52 H 0.104 0.896 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.449 -14.826 -9.536 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.126 3.874 3 O -0.394 6.394 4 C -0.199 4.199 5 C 0.298 3.702 6 O -0.450 6.450 7 N -0.340 5.340 8 C -0.014 4.014 9 C -0.172 4.172 10 C -0.134 4.134 11 C -0.071 4.071 12 C -0.161 4.161 13 C 0.034 3.966 14 N -0.352 5.352 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.257 4.257 18 N -0.596 5.596 19 Si 0.806 3.194 20 H -0.196 1.196 21 H -0.214 1.214 22 H -0.216 1.216 23 C 0.032 3.968 24 C 0.016 3.984 25 C -0.186 4.186 26 C -0.198 4.198 27 C -0.206 4.206 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.234 0.766 32 H 0.153 0.847 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.009 0.991 44 H 0.057 0.943 45 H 0.035 0.965 46 H 0.014 0.986 47 H 0.080 0.920 48 H 0.108 0.892 49 H 0.128 0.872 50 H 0.095 0.905 51 H 0.100 0.900 52 H 0.123 0.877 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.640 -14.268 -9.896 26.215 hybrid contribution 1.640 1.387 0.593 2.228 sum -18.000 -12.881 -9.303 24.010 Atomic orbital electron populations 1.21758 0.90396 1.03931 1.02870 1.20632 0.95095 0.80967 0.90659 1.86396 1.28759 1.27419 1.96803 1.22513 0.90547 1.05538 1.01277 1.21177 0.91109 0.77341 0.80596 1.90607 1.70813 1.45944 1.37620 1.48254 1.06465 1.51345 1.27904 1.22025 0.97246 0.97419 0.84741 1.21975 0.95119 1.01637 0.98438 1.21319 0.95627 0.99884 0.96577 1.21317 0.95579 0.93912 0.96325 1.22898 0.94299 0.99691 0.99177 1.21679 0.95857 0.85856 0.93195 1.44884 1.17077 1.04325 1.68929 1.19408 1.01369 0.84660 1.31528 0.91205 1.25584 0.96617 1.01960 1.01498 1.70062 1.08850 1.32546 1.48111 0.85022 0.77606 0.79478 0.77312 1.19631 1.21411 1.21590 1.21302 0.88985 0.93165 0.93362 1.21287 0.79967 1.01863 0.95268 1.22894 1.04370 0.99270 0.92112 1.22603 0.92234 1.01535 1.03468 1.23010 0.97691 1.03063 0.96802 0.91767 0.92095 0.88438 0.76636 0.84687 0.87323 0.88469 0.87194 0.87919 0.93600 0.89188 0.93938 0.92574 0.88909 0.91552 0.99101 0.94259 0.96500 0.98588 0.91953 0.89197 0.87162 0.90484 0.90049 0.87745 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.71 71.98 0.63 -1.28 16 2 C 0.17 3.29 0.92 -10.79 -0.01 3.28 16 3 O -0.58 -16.10 12.12 -131.42 -1.59 -17.70 16 4 C -0.16 -2.64 3.34 29.85 0.10 -2.54 16 5 C 0.51 12.40 7.20 87.66 0.63 13.03 16 6 O -0.57 -18.01 10.81 14.55 0.16 -17.86 16 7 N -0.61 -13.71 2.85 -820.11 -2.34 -16.05 16 8 C 0.11 1.56 6.29 86.36 0.54 2.11 16 9 C -0.13 -2.66 5.90 30.71 0.18 -2.47 16 10 C -0.10 -2.53 4.59 30.40 0.14 -2.39 16 11 C -0.07 -2.29 0.54 -51.82 -0.03 -2.32 16 12 C -0.12 -4.50 6.01 31.90 0.19 -4.31 16 13 C 0.16 8.01 5.58 86.88 0.48 8.49 16 14 N -0.63 -33.97 3.40 -692.48 -2.36 -36.33 16 15 C -0.24 -14.31 10.28 84.03 0.86 -13.44 16 16 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.06 -3.77 5.49 84.86 0.47 -3.31 16 18 N -0.95 -57.77 10.09 21.65 0.22 -57.55 16 19 Si 0.98 47.53 29.55 68.60 2.03 49.56 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 23 C 0.16 6.91 6.13 86.47 0.53 7.44 16 24 C 0.14 3.86 5.01 86.05 0.43 4.30 16 25 C -0.17 -3.30 4.05 -10.79 -0.04 -3.35 16 26 C -0.16 -3.88 8.04 30.62 0.25 -3.64 16 27 C -0.17 -3.18 9.66 30.62 0.30 -2.89 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.95 7.24 -2.38 -0.02 0.93 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.38 11.81 5.20 -74.06 -0.39 11.42 16 32 H 0.14 1.22 7.66 -2.39 -0.02 1.20 16 33 H 0.11 1.72 7.94 -2.38 -0.02 1.70 16 34 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.11 1.01 5.95 -2.39 -0.01 1.00 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.18 6.34 -2.39 -0.02 1.16 16 38 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.04 1.38 7.54 -2.39 -0.02 1.36 16 40 H 0.06 2.12 8.02 -2.39 -0.02 2.10 16 41 H 0.09 2.82 8.01 -2.39 -0.02 2.80 16 42 H 0.07 3.85 5.88 -2.39 -0.01 3.83 16 43 H -0.01 -0.48 7.80 -2.39 -0.02 -0.50 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.02 0.76 6.01 -2.39 -0.01 0.75 16 46 H 0.00 -0.19 7.66 -2.39 -0.02 -0.21 16 47 H 0.06 2.15 6.82 -2.39 -0.02 2.13 16 48 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.11 1.90 8.11 -2.39 -0.02 1.88 16 50 H 0.08 2.20 6.27 -2.39 -0.01 2.18 16 51 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 52 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 53 H 0.09 1.77 7.60 -2.38 -0.02 1.75 16 Total: -1.00 -74.85 389.21 2.27 -72.57 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.51 Total: 26.64 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 5.65 Total: -3.29 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -4.48 Total: -109.93 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -1.43 Total: -35.55 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -74.85 2.27 -72.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054120444.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.261 kcal (2) G-P(sol) polarization free energy of solvation -74.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds