Wall clock time and date at job start Tue Mar 31 2020 19:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47016 * 2 1 4 4 C 1.53003 * 109.46956 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.48423 * 54.97189 * 4 3 2 6 6 C 1.53087 * 109.47978 * 174.99929 * 4 3 2 7 7 C 1.53188 * 109.16351 * 177.58710 * 6 4 3 8 8 H 1.09000 * 109.54384 * 183.05991 * 7 6 4 9 9 C 1.50697 * 109.54080 * 62.88316 * 7 6 4 10 10 O 1.21286 * 120.00256 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99973 * 180.02562 * 9 7 6 12 12 C 1.47854 * 134.36272 * 180.02562 * 11 9 7 13 13 C 1.52566 * 85.65912 * 156.36815 * 12 11 9 14 14 C 1.47846 * 134.36341 * 359.97438 * 11 9 7 15 15 C 1.53855 * 115.92267 * 265.01215 * 13 12 11 16 16 C 1.55146 * 101.41177 * 264.41760 * 15 13 12 17 17 N 1.47538 * 105.01541 * 324.35503 * 16 15 13 18 18 C 1.36935 * 125.66378 * 203.89857 * 17 16 15 19 19 H 1.08000 * 119.99923 * 170.05365 * 18 17 16 20 20 C 1.38809 * 119.99800 * 350.05076 * 18 17 16 21 21 N 1.31616 * 120.00204 * 350.39860 * 20 18 17 22 22 Si 1.86798 * 119.99813 * 170.39685 * 20 18 17 23 23 H 1.48501 * 109.47544 * 94.14145 * 22 20 18 24 24 H 1.48502 * 109.47236 * 214.14483 * 22 20 18 25 25 H 1.48501 * 109.47058 * 334.14125 * 22 20 18 26 26 C 1.47364 * 108.67569 * 23.92160 * 17 16 15 27 27 C 1.53174 * 109.03338 * 303.02052 * 7 6 4 28 28 C 1.53088 * 109.16900 * 56.98067 * 27 7 6 29 29 O 1.42905 * 109.41261 * 302.38845 * 28 27 7 30 30 H 1.09001 * 109.47041 * 300.00302 * 1 2 3 31 31 H 1.09000 * 109.47301 * 59.99817 * 1 2 3 32 32 H 1.09001 * 109.47368 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47041 * 239.99698 * 2 1 3 34 34 H 1.09004 * 109.46906 * 119.99882 * 2 1 3 35 35 H 1.09001 * 109.47462 * 59.99956 * 3 2 1 36 36 H 1.09004 * 109.47186 * 299.99710 * 3 2 1 37 37 H 1.09000 * 109.52358 * 57.68412 * 6 4 3 38 38 H 1.09000 * 109.57671 * 297.52195 * 6 4 3 39 39 H 1.09000 * 113.84623 * 42.18418 * 12 11 9 40 40 H 1.09003 * 113.94930 * 270.56764 * 12 11 9 41 41 H 1.09001 * 113.83744 * 89.44757 * 14 11 9 42 42 H 1.09001 * 113.84700 * 317.81912 * 14 11 9 43 43 H 1.09002 * 111.02995 * 22.44866 * 15 13 12 44 44 H 1.08997 * 111.03724 * 146.37659 * 15 13 12 45 45 H 1.09001 * 110.33297 * 205.47301 * 16 15 13 46 46 H 1.08997 * 110.42600 * 83.29067 * 16 15 13 47 47 H 0.97000 * 119.99915 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.98407 * 238.60836 * 26 17 16 49 49 H 1.09005 * 109.98590 * 117.31165 * 26 17 16 50 50 H 1.08999 * 109.52007 * 176.88507 * 27 7 6 51 51 H 1.09003 * 109.52423 * 297.07160 * 27 7 6 52 52 H 1.08993 * 109.48585 * 182.40613 * 28 27 7 53 53 H 1.08998 * 109.49023 * 62.37252 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9332 0.8528 -0.8423 6 6 4.0804 2.8803 -0.1265 7 6 5.6111 2.8775 -0.0657 8 1 5.9792 3.9029 -0.1001 9 6 6.1607 2.1051 -1.2371 10 8 5.4042 1.6054 -2.0428 11 7 7.4929 1.9693 -1.3895 12 6 8.3567 1.3014 -2.3865 13 6 9.4342 2.2852 -1.9407 14 6 8.6729 2.4298 -0.6270 15 6 9.5676 3.5646 -2.7848 16 6 10.7084 3.1715 -3.7600 17 7 11.6195 2.3285 -2.9625 18 6 12.9499 2.1280 -3.2174 19 1 13.5694 1.6252 -2.4895 20 6 13.5022 2.5710 -4.4113 21 7 12.7208 3.0109 -5.3747 22 14 15.3546 2.5428 -4.6507 23 1 15.7473 1.2804 -5.3270 24 1 15.7634 3.7001 -5.4866 25 1 16.0258 2.6256 -3.3286 26 6 10.8601 1.7377 -1.8463 27 6 6.0580 2.2142 1.2406 28 6 5.4712 0.8021 1.3137 29 8 4.0470 0.8742 1.2208 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.6845 3.4804 0.6928 38 1 3.7545 3.3017 -1.0774 39 1 8.0305 1.4423 -3.4169 40 1 8.5837 0.2620 -2.1495 41 1 8.9954 1.7345 0.1480 42 1 8.5954 3.4581 -0.2737 43 1 8.6449 3.7741 -3.3260 44 1 9.8573 4.4135 -2.1655 45 1 11.2283 4.0619 -4.1134 46 1 10.3104 2.6067 -4.6030 47 1 13.1068 3.3201 -6.2092 48 1 11.3082 2.0278 -0.8960 49 1 10.8488 0.6515 -1.9371 50 1 7.1463 2.1581 1.2669 51 1 5.7020 2.8008 2.0875 52 1 5.7508 0.3408 2.2608 53 1 5.8594 0.2039 0.4894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073083480.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:49 Heat of formation + Delta-G solvation = -55.390554 kcal Electronic energy + Delta-G solvation = -30498.550164 eV Core-core repulsion = 26563.642042 eV Total energy + Delta-G solvation = -3934.908122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.12518 -40.82262 -38.93418 -37.24797 -35.97384 -34.72968 -34.03558 -32.22473 -31.16754 -30.16324 -28.32133 -27.64644 -27.32385 -25.74207 -24.97103 -23.73632 -22.39117 -22.11878 -21.93692 -19.88718 -19.58791 -18.63219 -17.73707 -17.46038 -17.31853 -16.94613 -16.74619 -16.61153 -15.98347 -15.64420 -15.58873 -15.42740 -15.09032 -14.74815 -14.39345 -14.15258 -13.91512 -13.79460 -13.73724 -13.55285 -13.50094 -13.30213 -13.18626 -12.89481 -12.80047 -12.74746 -12.46927 -12.43188 -12.25216 -12.02546 -11.93772 -11.86995 -11.75486 -11.68514 -11.59598 -11.53912 -11.31286 -11.28595 -10.69651 -10.62460 -10.20661 -9.70178 -8.83760 -7.86413 -5.20336 1.47787 1.48533 1.57978 1.58298 1.78280 2.51183 2.85521 3.26543 3.31363 3.45141 3.54919 3.66128 3.72020 3.79738 3.87516 3.99275 4.11166 4.14457 4.17421 4.21805 4.33315 4.36028 4.42475 4.50416 4.54939 4.61606 4.67348 4.69005 4.72216 4.78035 4.79838 4.82280 4.85804 4.88238 4.91789 4.95701 5.02155 5.05342 5.06874 5.12036 5.17588 5.19892 5.23380 5.29068 5.37464 5.46837 5.49149 5.59872 5.74346 6.21704 6.31555 6.72225 7.09648 7.11296 7.78649 8.44970 9.25786 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.031754 B = 0.002192 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.560638 B =12769.091850 C =13016.320389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.105 4.105 4 C 0.079 3.921 5 H 0.050 0.950 6 C -0.126 4.126 7 C -0.103 4.103 8 H 0.122 0.878 9 C 0.530 3.470 10 O -0.585 6.585 11 N -0.636 5.636 12 C 0.119 3.881 13 C -0.095 4.095 14 C 0.131 3.869 15 C -0.102 4.102 16 C 0.180 3.820 17 N -0.625 5.625 18 C -0.237 4.237 19 H 0.084 0.916 20 C -0.068 4.068 21 N -0.951 5.951 22 Si 0.976 3.024 23 H -0.290 1.290 24 H -0.296 1.296 25 H -0.265 1.265 26 C 0.148 3.852 27 C -0.139 4.139 28 C 0.055 3.945 29 O -0.389 6.389 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.032 0.968 46 H -0.011 1.011 47 H 0.246 0.754 48 H 0.052 0.948 49 H 0.026 0.974 50 H 0.095 0.905 51 H 0.104 0.896 52 H 0.115 0.885 53 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.057 0.052 18.008 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.143 4.143 4 C 0.022 3.978 5 H 0.068 0.932 6 C -0.164 4.164 7 C -0.124 4.124 8 H 0.140 0.860 9 C 0.322 3.678 10 O -0.466 6.466 11 N -0.370 5.370 12 C -0.004 4.004 13 C -0.096 4.096 14 C 0.009 3.991 15 C -0.140 4.140 16 C 0.055 3.945 17 N -0.351 5.351 18 C -0.366 4.366 19 H 0.102 0.898 20 C -0.262 4.262 21 N -0.600 5.600 22 Si 0.804 3.196 23 H -0.217 1.217 24 H -0.223 1.223 25 H -0.189 1.189 26 C 0.023 3.977 27 C -0.177 4.177 28 C -0.022 4.022 29 O -0.309 6.309 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.050 0.950 46 H 0.007 0.993 47 H 0.055 0.945 48 H 0.070 0.930 49 H 0.044 0.956 50 H 0.114 0.886 51 H 0.123 0.877 52 H 0.133 0.867 53 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -19.652 -0.215 17.625 26.399 hybrid contribution 1.430 -0.206 -1.546 2.116 sum -18.222 -0.421 16.079 24.305 Atomic orbital electron populations 1.21749 0.94592 1.02002 1.02174 1.21450 0.96676 0.96529 1.01310 1.21602 0.91888 0.97759 1.03011 1.22336 0.95325 0.93528 0.86600 0.93200 1.21994 0.93115 0.97797 1.03478 1.21433 0.97045 1.01247 0.92654 0.86025 1.20958 0.80011 0.80019 0.86829 1.90642 1.57394 1.51600 1.46961 1.50193 1.03904 1.53950 1.28929 1.23011 0.86386 0.97446 0.93519 1.22294 0.93564 0.96355 0.97378 1.23285 0.79040 1.02801 0.93947 1.22459 0.97943 0.96056 0.97584 1.21184 0.88758 0.93310 0.91256 1.44870 1.06108 1.54055 1.30093 1.19427 0.84383 1.32512 1.00296 0.89798 1.25664 1.02283 1.02554 0.95652 1.70168 1.34506 1.50027 1.05321 0.85109 0.80089 0.76569 0.77819 1.21714 1.22306 1.18937 1.21196 0.89439 0.95558 0.91550 1.22217 1.02623 0.96732 0.96114 1.22666 0.80920 0.96421 1.02154 1.87867 1.21332 1.82819 1.38852 0.91991 0.92515 0.92442 0.93660 0.92226 0.90347 0.90385 0.88379 0.91238 0.92420 0.88916 0.86531 0.87077 0.91552 0.89779 0.94979 0.99327 0.94487 0.93034 0.95634 0.88629 0.87739 0.86679 0.95830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.41 16 2 C -0.12 -2.28 5.83 30.59 0.18 -2.10 16 3 C -0.11 -1.94 4.92 30.60 0.15 -1.79 16 4 C 0.08 1.77 2.35 30.62 0.07 1.84 16 5 H 0.05 1.47 5.80 -2.39 -0.01 1.46 16 6 C -0.13 -2.36 4.56 30.69 0.14 -2.22 16 7 C -0.10 -1.85 2.87 -11.42 -0.03 -1.88 16 8 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 9 C 0.53 14.00 6.05 87.66 0.53 14.53 16 10 O -0.59 -20.42 14.57 -3.05 -0.04 -20.46 16 11 N -0.64 -15.71 3.58 -859.76 -3.08 -18.79 16 12 C 0.12 3.51 8.08 85.98 0.69 4.21 16 13 C -0.09 -2.73 0.97 -52.11 -0.05 -2.78 16 14 C 0.13 2.47 6.24 85.96 0.54 3.00 16 15 C -0.10 -3.46 6.42 31.62 0.20 -3.25 16 16 C 0.18 8.61 5.44 86.92 0.47 9.08 16 17 N -0.62 -30.49 3.41 -692.88 -2.36 -32.85 16 18 C -0.24 -12.83 10.24 84.03 0.86 -11.97 16 19 H 0.08 4.30 7.85 -2.91 -0.02 4.27 16 20 C -0.07 -3.84 5.40 84.86 0.46 -3.38 16 21 N -0.95 -57.11 10.68 21.65 0.23 -56.88 16 22 Si 0.98 45.03 29.56 68.60 2.03 47.06 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 26 C 0.15 5.30 6.75 86.22 0.58 5.88 16 27 C -0.14 -1.90 5.55 30.68 0.17 -1.73 16 28 C 0.06 0.99 6.62 72.01 0.48 1.47 16 29 O -0.39 -8.55 9.95 -148.98 -1.48 -10.03 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.20 7.83 -2.38 -0.02 1.18 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.44 8.03 -2.39 -0.02 1.42 16 39 H 0.06 1.99 8.12 -2.39 -0.02 1.97 16 40 H 0.09 2.57 8.00 -2.39 -0.02 2.55 16 41 H 0.12 1.62 7.90 -2.39 -0.02 1.60 16 42 H 0.11 1.58 8.12 -2.39 -0.02 1.56 16 43 H 0.07 2.18 8.06 -2.39 -0.02 2.16 16 44 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.03 1.74 6.94 -2.39 -0.02 1.72 16 46 H -0.01 -0.61 8.06 -2.39 -0.02 -0.63 16 47 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 48 H 0.05 1.66 8.09 -2.39 -0.02 1.65 16 49 H 0.03 0.93 7.86 -2.38 -0.02 0.91 16 50 H 0.10 1.03 6.06 -2.39 -0.01 1.01 16 51 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 53 H 0.02 0.53 7.38 -2.39 -0.02 0.52 16 Total: -1.00 -72.22 403.21 2.31 -69.91 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.86 Total: 14.55 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.15 Total: 7.49 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -5.21 Total: -108.52 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -1.53 Total: -30.49 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -72.22 2.31 -69.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073083480.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.520 kcal (2) G-P(sol) polarization free energy of solvation -72.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds