Wall clock time and date at job start Tue Mar 31 2020 19:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46950 * 2 1 4 4 C 1.53005 * 109.46597 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.48477 * 304.97510 * 4 3 2 6 6 C 1.53284 * 109.46188 * 184.98791 * 4 3 2 7 7 C 1.53179 * 109.06138 * 182.44383 * 6 4 3 8 8 H 1.09005 * 109.54195 * 176.85948 * 7 6 4 9 9 C 1.50706 * 109.54500 * 297.03166 * 7 6 4 10 10 O 1.21279 * 119.99866 * 1.33563 * 9 7 6 11 11 N 1.34778 * 120.00137 * 181.33476 * 9 7 6 12 12 C 1.47884 * 134.33940 * 4.36629 * 11 9 7 13 13 C 1.52379 * 85.59081 * 156.51337 * 12 11 9 14 14 C 1.47888 * 134.34026 * 184.36290 * 11 9 7 15 15 C 1.53649 * 116.39229 * 141.35631 * 13 12 11 16 16 C 1.54605 * 102.73239 * 95.48687 * 15 13 12 17 17 N 1.47136 * 107.36371 * 20.75266 * 16 15 13 18 18 C 1.36932 * 125.58747 * 180.92645 * 17 16 15 19 19 H 1.08002 * 120.00036 * 173.77168 * 18 17 16 20 20 C 1.38807 * 120.00076 * 353.77176 * 18 17 16 21 21 N 1.31619 * 120.00507 * 162.30141 * 20 18 17 22 22 Si 1.86800 * 119.99970 * 342.29975 * 20 18 17 23 23 H 1.48497 * 109.47461 * 185.46894 * 22 20 18 24 24 H 1.48497 * 109.47431 * 305.47148 * 22 20 18 25 25 H 1.48506 * 109.47139 * 65.47155 * 22 20 18 26 26 C 1.47735 * 108.82473 * 1.19416 * 17 16 15 27 27 C 1.53176 * 109.10920 * 56.94415 * 7 6 4 28 28 C 1.53094 * 109.16278 * 302.97094 * 27 7 6 29 29 O 1.42901 * 109.41134 * 57.61420 * 28 27 7 30 30 H 1.08990 * 109.47165 * 60.00053 * 1 2 3 31 31 H 1.09001 * 109.46761 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46927 * 299.99811 * 1 2 3 33 33 H 1.09002 * 109.46927 * 240.00189 * 2 1 3 34 34 H 1.09001 * 109.47036 * 120.00400 * 2 1 3 35 35 H 1.08997 * 109.47426 * 60.00696 * 3 2 1 36 36 H 1.09000 * 109.47093 * 299.99870 * 3 2 1 37 37 H 1.09002 * 109.64232 * 62.53237 * 6 4 3 38 38 H 1.08999 * 109.50778 * 302.27510 * 6 4 3 39 39 H 1.08993 * 113.85803 * 42.34918 * 12 11 9 40 40 H 1.09000 * 113.96824 * 270.68611 * 12 11 9 41 41 H 1.09002 * 113.85056 * 89.32207 * 14 11 9 42 42 H 1.08998 * 113.85422 * 317.64938 * 14 11 9 43 43 H 1.09004 * 110.75844 * 337.17308 * 15 13 12 44 44 H 1.09004 * 110.76146 * 213.79888 * 15 13 12 45 45 H 1.08996 * 109.86486 * 261.30557 * 16 15 13 46 46 H 1.08999 * 109.97924 * 140.26052 * 16 15 13 47 47 H 0.97001 * 119.99436 * 354.93905 * 21 20 18 48 48 H 1.08997 * 110.40025 * 96.07198 * 26 17 16 49 49 H 1.08996 * 110.39437 * 218.48188 * 26 17 16 50 50 H 1.08997 * 109.52213 * 62.88098 * 27 7 6 51 51 H 1.09010 * 109.51899 * 183.00451 * 27 7 6 52 52 H 1.08996 * 109.47687 * 177.59343 * 28 27 7 53 53 H 1.08999 * 109.48356 * 297.61655 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9339 0.8532 0.8411 6 6 4.0809 2.8821 0.1250 7 6 5.6114 2.8772 0.0620 8 1 5.9810 3.9022 0.0946 9 6 6.1618 2.1054 1.2336 10 8 5.4054 1.5870 2.0274 11 7 7.4944 1.9913 1.3992 12 6 8.6741 2.5431 0.6986 13 6 9.4160 2.3059 2.0082 14 6 8.3588 1.2644 2.3540 15 6 10.8619 1.7992 1.8920 16 6 11.6884 3.1024 1.9863 17 7 10.8371 4.1167 2.6276 18 6 11.1949 5.4145 2.8783 19 1 10.4649 6.1113 3.2628 20 6 12.4960 5.8344 2.6381 21 7 12.7652 7.1189 2.5384 22 14 13.8649 4.5765 2.4565 23 1 15.1689 5.2773 2.3396 24 1 13.8843 3.6904 3.6479 25 1 13.6299 3.7617 1.2374 26 6 9.5353 3.5039 2.9627 27 6 6.0573 2.2129 -1.2442 28 6 5.4702 0.8008 -1.3158 29 8 4.0461 0.8733 -1.2220 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7570 3.3041 1.0764 38 1 3.6846 3.4818 -0.6944 39 1 8.5761 3.5954 0.4319 40 1 9.0281 1.9252 -0.1266 41 1 8.6149 0.2539 2.0356 42 1 8.0134 1.3131 3.3866 43 1 11.0231 1.3080 0.9323 44 1 11.1035 1.1279 2.7161 45 1 11.9718 3.4343 0.9875 46 1 12.5815 2.9342 2.5880 47 1 12.0450 7.7684 2.5592 48 1 9.5288 3.1688 3.9999 49 1 8.7255 4.2117 2.7861 50 1 5.7008 2.7990 -2.0912 51 1 7.1457 2.1577 -1.2717 52 1 5.7491 0.3389 -2.2628 53 1 5.8591 0.2032 -0.4914 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073083483.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:01 Heat of formation + Delta-G solvation = -47.392617 kcal Electronic energy + Delta-G solvation = -30763.895659 eV Core-core repulsion = 26829.334354 eV Total energy + Delta-G solvation = -3934.561305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.18151 -40.91831 -39.02563 -37.48481 -35.99511 -34.78658 -34.39258 -32.30396 -31.61335 -30.24003 -28.43078 -27.80765 -27.41880 -25.67835 -24.73670 -23.77367 -22.68422 -22.29943 -21.95130 -20.20986 -19.58211 -19.33525 -17.86369 -17.49444 -17.35461 -17.07165 -16.89192 -16.59711 -16.27271 -15.79270 -15.51516 -15.42942 -15.13237 -14.98376 -14.70727 -14.47538 -14.22398 -13.95012 -13.78236 -13.57438 -13.47527 -13.31983 -13.26389 -13.05765 -12.99563 -12.84433 -12.51748 -12.42634 -12.29321 -12.03304 -11.94302 -11.86930 -11.67070 -11.55068 -11.51527 -11.40058 -11.30076 -11.01668 -10.72660 -10.58055 -10.23051 -9.74188 -9.09427 -8.64943 -5.44543 1.42475 1.52965 1.54203 1.74429 1.76026 2.58450 2.82518 3.03402 3.20325 3.33021 3.44751 3.48735 3.58667 3.72283 3.82141 3.90165 3.95794 4.02593 4.13254 4.18275 4.30329 4.34058 4.36449 4.40881 4.48191 4.53833 4.60488 4.61433 4.65536 4.69500 4.74507 4.75740 4.77041 4.79971 4.84335 4.89799 4.92450 4.96624 4.98809 4.99451 5.02940 5.08297 5.15945 5.18744 5.27117 5.28722 5.36051 5.46088 5.53109 6.09937 6.28613 6.64080 6.83677 7.06454 7.44545 8.09680 8.87647 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026563 B = 0.002466 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.832688 B =11351.061996 C =11498.614757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.107 4.107 4 C 0.083 3.917 5 H 0.058 0.942 6 C -0.127 4.127 7 C -0.109 4.109 8 H 0.103 0.897 9 C 0.534 3.466 10 O -0.578 6.578 11 N -0.642 5.642 12 C 0.127 3.873 13 C -0.099 4.099 14 C 0.128 3.872 15 C -0.099 4.099 16 C 0.095 3.905 17 N -0.631 5.631 18 C -0.312 4.312 19 H 0.039 0.961 20 C -0.082 4.082 21 N -0.964 5.964 22 Si 1.108 2.892 23 H -0.318 1.318 24 H -0.289 1.289 25 H -0.235 1.235 26 C 0.159 3.841 27 C -0.139 4.139 28 C 0.059 3.941 29 O -0.389 6.389 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.093 0.907 45 H 0.044 0.956 46 H 0.023 0.977 47 H 0.246 0.754 48 H 0.025 0.975 49 H 0.024 0.976 50 H 0.097 0.903 51 H 0.092 0.908 52 H 0.117 0.883 53 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.070 -18.166 -10.849 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.144 4.144 4 C 0.025 3.975 5 H 0.076 0.924 6 C -0.165 4.165 7 C -0.130 4.130 8 H 0.121 0.879 9 C 0.325 3.675 10 O -0.459 6.459 11 N -0.376 5.376 12 C 0.005 3.995 13 C -0.101 4.101 14 C 0.006 3.994 15 C -0.137 4.137 16 C -0.028 4.028 17 N -0.359 5.359 18 C -0.440 4.440 19 H 0.057 0.943 20 C -0.274 4.274 21 N -0.608 5.608 22 Si 0.935 3.065 23 H -0.247 1.247 24 H -0.217 1.217 25 H -0.160 1.160 26 C 0.034 3.966 27 C -0.176 4.176 28 C -0.017 4.017 29 O -0.308 6.308 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.089 0.911 43 H 0.135 0.865 44 H 0.112 0.888 45 H 0.062 0.938 46 H 0.041 0.959 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.042 0.958 50 H 0.115 0.885 51 H 0.111 0.889 52 H 0.135 0.865 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -16.207 -18.559 -10.792 26.900 hybrid contribution -1.388 1.463 1.307 2.403 sum -17.595 -17.096 -9.485 26.302 Atomic orbital electron populations 1.21756 0.94697 1.02066 1.02080 1.21437 0.96575 0.96231 1.01522 1.21612 0.91897 0.98030 1.02878 1.22363 0.95289 0.93005 0.86816 0.92444 1.22028 0.92905 0.98339 1.03179 1.21415 0.97306 1.00749 0.93526 0.87887 1.20707 0.80346 0.80087 0.86368 1.90622 1.57308 1.51001 1.47001 1.50257 1.03650 1.49559 1.34122 1.23200 0.80197 1.00423 0.95680 1.22335 0.95483 0.95697 0.96588 1.23059 0.84842 0.96915 0.94558 1.22388 0.90957 0.95170 1.05154 1.22296 0.94329 0.90175 0.96023 1.44989 1.13120 1.07568 1.70252 1.19986 0.96710 0.85407 1.41914 0.94294 1.27176 1.00429 1.00708 0.99111 1.71011 1.34626 1.01528 1.53627 0.83487 0.72114 0.72233 0.78680 1.24721 1.21674 1.15952 1.21177 0.87199 0.92593 0.95663 1.22184 1.02463 0.97263 0.95733 1.22645 0.80832 0.95756 1.02508 1.87867 1.21386 1.82598 1.38966 0.92207 0.92246 0.92562 0.92105 0.93256 0.90445 0.90690 0.91397 0.88993 0.90789 0.85466 0.86045 0.91080 0.86502 0.88846 0.93763 0.95928 0.94562 0.95747 0.95770 0.88488 0.88945 0.86498 0.94991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.12 -2.16 5.83 30.60 0.18 -1.99 16 3 C -0.11 -2.00 4.92 30.60 0.15 -1.85 16 4 C 0.08 1.86 2.36 30.69 0.07 1.93 16 5 H 0.06 1.63 5.76 -2.39 -0.01 1.62 16 6 C -0.13 -2.67 4.58 30.75 0.14 -2.53 16 7 C -0.11 -2.30 2.83 -11.42 -0.03 -2.33 16 8 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 9 C 0.53 14.24 6.05 87.66 0.53 14.77 16 10 O -0.58 -19.32 14.52 -3.03 -0.04 -19.36 16 11 N -0.64 -15.20 3.56 -863.55 -3.08 -18.28 16 12 C 0.13 2.67 6.53 85.91 0.56 3.23 16 13 C -0.10 -2.50 0.99 -52.08 -0.05 -2.55 16 14 C 0.13 2.77 8.21 85.91 0.71 3.47 16 15 C -0.10 -2.30 6.36 31.36 0.20 -2.10 16 16 C 0.10 3.51 4.62 86.80 0.40 3.91 16 17 N -0.63 -28.97 3.36 -692.88 -2.33 -31.30 16 18 C -0.31 -17.88 10.55 84.03 0.89 -16.99 16 19 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 20 C -0.08 -4.83 5.49 84.86 0.47 -4.36 16 21 N -0.96 -61.91 13.70 21.65 0.30 -61.61 16 22 Si 1.11 51.78 24.53 68.60 1.68 53.46 16 23 H -0.32 -15.57 7.11 99.48 0.71 -14.86 16 24 H -0.29 -12.87 6.85 99.48 0.68 -12.18 16 25 H -0.24 -9.14 5.29 99.48 0.53 -8.62 16 26 C 0.16 5.93 6.65 86.36 0.57 6.50 16 27 C -0.14 -2.23 5.56 30.68 0.17 -2.06 16 28 C 0.06 1.06 6.62 72.01 0.48 1.54 16 29 O -0.39 -8.57 9.94 -148.98 -1.48 -10.05 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 1.17 7.82 -2.39 -0.02 1.15 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.57 8.04 -2.39 -0.02 1.55 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 40 H 0.13 1.74 7.75 -2.39 -0.02 1.73 16 41 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 1.74 8.12 -2.39 -0.02 1.72 16 43 H 0.12 1.82 7.99 -2.39 -0.02 1.81 16 44 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.04 1.67 6.50 -2.39 -0.02 1.66 16 46 H 0.02 0.90 4.09 -2.39 -0.01 0.89 16 47 H 0.25 15.93 8.73 -92.71 -0.81 15.12 16 48 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.02 0.98 8.08 -2.39 -0.02 0.96 16 50 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.09 1.25 6.32 -2.38 -0.02 1.23 16 52 H 0.12 1.54 8.14 -2.39 -0.02 1.53 16 53 H 0.03 0.67 7.38 -2.39 -0.02 0.65 16 Total: -1.00 -76.13 395.50 1.81 -74.31 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.62 Total: 15.61 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 6.14 Total: -2.79 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -5.11 Total: -111.19 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.53 Total: -29.41 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 1.68 Total: 53.46 kcal Total: -76.13 1.81 -74.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073083483.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.922 kcal (2) G-P(sol) polarization free energy of solvation -76.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds