Wall clock time and date at job start Tue Mar 31 2020 20:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50694 * 119.99911 * 2 1 4 4 C 1.32998 * 119.99875 * 179.97438 * 2 1 3 5 5 C 1.47104 * 119.99731 * 188.24577 * 4 2 1 6 6 O 1.21610 * 119.99932 * 3.32092 * 5 4 2 7 7 N 1.34780 * 119.99761 * 183.31799 * 5 4 2 8 8 C 1.46924 * 120.63032 * 354.79131 * 7 5 4 9 9 C 1.52757 * 109.00751 * 233.58273 * 8 7 5 10 10 C 1.53035 * 109.38415 * 305.58927 * 9 8 7 11 11 C 1.53003 * 109.45062 * 181.25552 * 10 9 8 12 12 H 1.09004 * 109.47624 * 299.95930 * 11 10 9 13 13 C 1.53086 * 109.48213 * 59.99257 * 11 10 9 14 14 C 1.53179 * 109.16729 * 177.59354 * 13 11 10 15 15 H 1.09005 * 109.54244 * 62.88644 * 14 13 11 16 16 N 1.46501 * 109.62053 * 183.10952 * 14 13 11 17 17 C 1.36934 * 120.00164 * 204.60123 * 16 14 13 18 18 H 1.08001 * 119.99678 * 359.97438 * 17 16 14 19 19 C 1.38809 * 119.99994 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00216 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99850 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47016 * 60.00241 * 21 19 17 23 23 H 1.48499 * 109.47252 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47343 * 300.00101 * 21 19 17 25 25 C 1.53181 * 109.03579 * 303.02324 * 14 13 11 26 26 C 1.53095 * 109.16061 * 56.97675 * 25 14 13 27 27 O 1.42899 * 109.48478 * 179.97438 * 11 10 9 28 28 C 1.53040 * 109.53792 * 61.23986 * 10 9 8 29 29 C 1.46920 * 120.62794 * 175.07181 * 7 5 4 30 30 H 1.08999 * 109.46967 * 90.00396 * 1 2 3 31 31 H 1.08999 * 109.47201 * 210.00114 * 1 2 3 32 32 H 1.08997 * 109.47254 * 330.00339 * 1 2 3 33 33 H 1.08993 * 109.47421 * 95.88652 * 3 2 1 34 34 H 1.09004 * 109.46908 * 215.88901 * 3 2 1 35 35 H 1.08999 * 109.47094 * 335.88199 * 3 2 1 36 36 H 1.07997 * 119.99794 * 8.24924 * 4 2 1 37 37 H 1.08999 * 109.58689 * 353.42186 * 8 7 5 38 38 H 1.09002 * 109.58948 * 113.84161 * 8 7 5 39 39 H 1.09003 * 109.56110 * 185.54971 * 9 8 7 40 40 H 1.09001 * 109.35961 * 65.49992 * 9 8 7 41 41 H 1.08995 * 109.46044 * 301.21734 * 10 9 8 42 42 H 1.09003 * 109.52871 * 297.49825 * 13 11 10 43 43 H 1.09000 * 109.52362 * 57.68690 * 13 11 10 44 44 H 0.97003 * 119.99793 * 24.60266 * 16 14 13 45 45 H 0.96993 * 120.00235 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.51841 * 297.07400 * 25 14 13 47 47 H 1.08999 * 109.52440 * 176.88019 * 25 14 13 48 48 H 1.09001 * 109.47936 * 182.41070 * 26 25 14 49 49 H 1.08998 * 109.49387 * 62.38301 * 26 25 14 50 50 H 1.09003 * 109.49575 * 178.67985 * 28 10 9 51 51 H 1.09002 * 109.49727 * 58.58720 * 28 10 9 52 52 H 1.09004 * 109.58719 * 246.15318 * 29 7 5 53 53 H 1.08995 * 109.59105 * 6.57940 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 3.6316 -1.1583 0.1832 6 8 4.2226 -0.1166 0.3941 7 7 4.3139 -2.3188 0.1170 8 6 3.6040 -3.5975 -0.0231 9 6 4.0602 -4.5438 1.0859 10 6 5.5855 -4.6646 1.0551 11 6 6.0417 -5.6364 2.1452 12 1 5.7268 -5.2633 3.1198 13 6 5.4157 -7.0114 1.8980 14 6 5.9242 -7.9935 2.9579 15 1 5.6002 -7.6644 3.9453 16 7 5.3894 -9.3302 2.6869 17 6 5.2668 -10.2379 3.7048 18 1 5.5647 -9.9685 4.7073 19 6 4.7605 -11.5046 3.4479 20 7 4.3988 -11.8334 2.2259 21 14 4.5939 -12.7430 4.8364 22 1 3.6870 -12.1989 5.8789 23 1 4.0317 -14.0104 4.3045 24 1 5.9299 -13.0042 5.4298 25 6 7.4547 -8.0341 2.9080 26 6 8.0019 -6.6195 3.1162 27 8 7.4659 -5.7502 2.1167 28 6 6.2127 -3.2906 1.3019 29 6 5.7812 -2.3295 0.1898 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 2.5334 1.5671 1.0222 34 1 3.1632 1.2034 -0.6025 35 1 1.6298 2.0887 -0.4199 36 1 1.6403 -2.0823 -0.1333 37 1 2.5302 -3.4303 0.0598 38 1 3.8334 -4.0384 -0.9932 39 1 3.6142 -5.5267 0.9333 40 1 3.7461 -4.1472 2.0513 41 1 5.9006 -5.0379 0.0808 42 1 4.3303 -6.9347 1.9636 43 1 5.6973 -7.3670 0.9069 44 1 5.1221 -9.5722 1.7864 45 1 4.0454 -12.7186 2.0463 46 1 7.7775 -8.4103 1.9373 47 1 7.8276 -8.6885 3.6958 48 1 9.0891 -6.6354 3.0390 49 1 7.7129 -6.2594 4.1035 50 1 7.2989 -3.3815 1.3032 51 1 5.8783 -2.9058 2.2653 52 1 6.1919 -2.6650 -0.7626 53 1 6.1435 -1.3261 0.4131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075384682.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:14 Heat of formation + Delta-G solvation = -84.849131 kcal Electronic energy + Delta-G solvation = -29827.984980 eV Core-core repulsion = 25891.799439 eV Total energy + Delta-G solvation = -3936.185541 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.42593 -40.52171 -38.56224 -36.74958 -36.29265 -34.79645 -34.07737 -32.36614 -31.25940 -30.89673 -28.98711 -28.60954 -26.93648 -25.73510 -24.69147 -23.81153 -23.36531 -21.80236 -21.24345 -20.50685 -19.18364 -18.96337 -18.36651 -17.20589 -17.05226 -16.58875 -16.50216 -16.28194 -15.75517 -15.51530 -15.33477 -15.12460 -15.01183 -14.80738 -14.73137 -14.59301 -14.41766 -14.11139 -13.92586 -13.57271 -13.39324 -13.18634 -13.14262 -12.96686 -12.84572 -12.64243 -12.58840 -12.37771 -12.29526 -12.24198 -12.15894 -11.96664 -11.91278 -11.73784 -11.50033 -11.38189 -11.03564 -10.87857 -10.50972 -10.40395 -10.10414 -9.49333 -9.02476 -7.95133 -5.23884 0.41576 1.46276 1.48653 1.54808 2.08806 2.30546 2.54655 2.81036 3.37137 3.55835 3.60939 3.78918 3.89884 3.93065 4.01809 4.03748 4.12498 4.16924 4.21849 4.25312 4.32635 4.39680 4.43882 4.54487 4.58019 4.59255 4.66719 4.69969 4.74426 4.78401 4.83503 4.87619 4.88474 4.91000 4.93292 4.97026 5.03110 5.06850 5.11104 5.17044 5.20644 5.26742 5.34757 5.44788 5.47842 5.54129 5.55687 5.59795 5.71626 6.26614 6.34709 6.48971 7.23308 7.32807 8.08155 8.32241 9.27950 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.002255 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.755014 B =12415.626089 C =13696.145861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.026 4.026 3 C -0.124 4.124 4 C -0.256 4.256 5 C 0.538 3.462 6 O -0.583 6.583 7 N -0.609 5.609 8 C 0.109 3.891 9 C -0.129 4.129 10 C -0.070 4.070 11 C 0.107 3.893 12 H 0.056 0.944 13 C -0.141 4.141 14 C 0.169 3.831 15 H 0.040 0.960 16 N -0.735 5.735 17 C -0.240 4.240 18 H 0.073 0.927 19 C -0.075 4.075 20 N -0.968 5.968 21 Si 0.971 3.029 22 H -0.277 1.277 23 H -0.296 1.296 24 H -0.280 1.280 25 C -0.164 4.164 26 C 0.072 3.928 27 O -0.387 6.387 28 C -0.114 4.114 29 C 0.114 3.886 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.152 0.848 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.372 0.628 45 H 0.251 0.749 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.106 0.894 49 H 0.055 0.945 50 H 0.082 0.918 51 H 0.055 0.945 52 H 0.077 0.923 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 24.326 -5.762 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.028 4.028 3 C -0.180 4.180 4 C -0.276 4.276 5 C 0.331 3.669 6 O -0.466 6.466 7 N -0.341 5.341 8 C -0.013 4.013 9 C -0.167 4.167 10 C -0.089 4.089 11 C 0.049 3.951 12 H 0.074 0.926 13 C -0.179 4.179 14 C 0.061 3.939 15 H 0.058 0.942 16 N -0.374 5.374 17 C -0.372 4.372 18 H 0.091 0.909 19 C -0.267 4.267 20 N -0.619 5.619 21 Si 0.800 3.200 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.206 1.206 25 C -0.204 4.204 26 C -0.005 4.005 27 O -0.306 6.306 28 C -0.152 4.152 29 C -0.009 4.009 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.169 0.831 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.204 0.796 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.124 0.876 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.074 0.926 52 H 0.095 0.905 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.901 24.857 -5.612 25.780 hybrid contribution 0.004 -1.654 0.636 1.772 sum -3.897 23.203 -4.976 24.049 Atomic orbital electron populations 1.21075 0.88722 1.04335 1.04053 1.22901 0.97533 0.94726 0.87683 1.21098 0.99907 0.94444 1.02568 1.22582 0.92078 1.00413 1.12514 1.19063 0.89012 0.82713 0.76074 1.90716 1.71908 1.32416 1.51545 1.48129 1.07134 1.06819 1.72061 1.21869 0.98123 0.82159 0.99156 1.21922 0.94371 1.00684 0.99754 1.21056 0.95485 0.93895 0.98426 1.22055 0.80748 0.93524 0.98800 0.92581 1.22403 1.01170 0.95176 0.99145 1.20466 0.91714 0.85048 0.96697 0.94232 1.42599 1.75946 1.10498 1.08404 1.19548 1.33853 0.93314 0.90497 0.90904 1.25533 1.02711 0.99743 0.98759 1.69800 1.50781 1.20922 1.20396 0.85257 0.77858 0.78264 0.78661 1.20354 1.22188 1.20586 1.22769 0.98727 0.97655 1.01288 1.22567 0.99047 0.87819 0.91109 1.87826 1.20715 1.65986 1.56077 1.21778 1.01487 0.93786 0.98165 1.21568 0.79546 1.00532 0.99224 0.88955 0.90103 0.89890 0.91568 0.91561 0.90590 0.83088 0.87370 0.89966 0.89329 0.91568 0.90178 0.90465 0.92143 0.79571 0.94029 0.93270 0.92681 0.87574 0.92684 0.89951 0.92620 0.90475 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 10.01 71.24 0.71 -0.29 16 2 C -0.03 -0.39 6.10 -17.62 -0.11 -0.50 16 3 C -0.12 -2.13 8.46 71.23 0.60 -1.53 16 4 C -0.26 -4.24 8.92 23.43 0.21 -4.03 16 5 C 0.54 12.23 7.52 86.57 0.65 12.88 16 6 O -0.58 -16.89 12.66 -4.06 -0.05 -16.94 16 7 N -0.61 -12.01 2.98 -824.04 -2.45 -14.47 16 8 C 0.11 1.63 6.29 86.22 0.54 2.17 16 9 C -0.13 -2.30 5.03 30.53 0.15 -2.15 16 10 C -0.07 -1.46 1.95 -10.77 -0.02 -1.48 16 11 C 0.11 2.76 2.22 30.62 0.07 2.83 16 12 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 13 C -0.14 -4.40 4.47 30.68 0.14 -4.26 16 14 C 0.17 6.57 2.86 45.11 0.13 6.70 16 15 H 0.04 1.58 8.08 -2.38 -0.02 1.56 16 16 N -0.74 -36.71 5.13 -322.36 -1.65 -38.36 16 17 C -0.24 -13.22 9.93 84.03 0.83 -12.39 16 18 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.08 -4.28 5.50 84.86 0.47 -3.82 16 20 N -0.97 -58.76 13.06 21.65 0.28 -58.48 16 21 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 C -0.16 -5.79 5.72 30.69 0.18 -5.62 16 26 C 0.07 1.97 6.84 72.01 0.49 2.46 16 27 O -0.39 -10.82 9.71 -148.98 -1.45 -12.26 16 28 C -0.11 -2.32 5.23 30.67 0.16 -2.16 16 29 C 0.11 2.28 6.44 86.36 0.56 2.84 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.55 8.07 -2.39 -0.02 0.53 16 32 H 0.08 0.53 8.12 -2.39 -0.02 0.51 16 33 H 0.07 1.29 8.03 -2.39 -0.02 1.27 16 34 H 0.07 1.47 6.16 -2.38 -0.01 1.46 16 35 H 0.08 0.92 8.09 -2.39 -0.02 0.91 16 36 H 0.15 1.72 5.93 -2.91 -0.02 1.70 16 37 H 0.11 1.21 5.38 -2.39 -0.01 1.19 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.59 6.42 -2.39 -0.02 1.58 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 2.35 6.54 -2.39 -0.02 2.33 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.37 20.00 7.80 -92.71 -0.72 19.28 16 45 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 46 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.08 1.72 7.64 -2.39 -0.02 1.70 16 51 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.08 1.78 6.99 -2.39 -0.02 1.77 16 Total: -1.00 -69.09 405.00 2.63 -66.46 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.16 Total: 34.60 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 5.76 Total: -8.33 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -3.83 Total: -111.31 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -1.50 Total: -29.20 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -69.09 2.63 -66.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075384682.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.394 kcal (2) G-P(sol) polarization free energy of solvation -69.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds