Wall clock time and date at job start Tue Mar 31 2020 20:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50702 * 119.99903 * 2 1 4 4 C 1.32994 * 119.99832 * 179.97438 * 2 1 3 5 5 C 1.47105 * 120.00144 * 0.02562 * 4 2 1 6 6 O 1.21610 * 119.99912 * 354.88688 * 5 4 2 7 7 N 1.34780 * 119.99647 * 174.89453 * 5 4 2 8 8 C 1.46927 * 120.62779 * 185.34197 * 7 5 4 9 9 C 1.53190 * 108.77469 * 233.58729 * 8 7 5 10 10 C 1.53041 * 109.30992 * 305.36452 * 9 8 7 11 11 C 1.52995 * 109.46116 * 181.38932 * 10 9 8 12 12 H 1.08999 * 109.47991 * 305.07601 * 11 10 9 13 13 O 1.42906 * 109.48201 * 185.04641 * 11 10 9 14 14 C 1.42899 * 114.09905 * 178.85825 * 13 11 10 15 15 C 1.53092 * 109.41789 * 61.15390 * 14 13 11 16 16 C 1.53174 * 109.16295 * 302.39391 * 15 14 13 17 17 C 1.53092 * 109.48333 * 65.09931 * 11 10 9 18 18 H 1.08993 * 109.52069 * 297.55907 * 17 11 10 19 19 N 1.46492 * 109.52165 * 57.68885 * 17 11 10 20 20 C 1.36936 * 120.00108 * 200.23083 * 19 17 11 21 21 H 1.08004 * 119.99957 * 359.97438 * 20 19 17 22 22 C 1.38817 * 120.00140 * 180.02562 * 20 19 17 23 23 N 1.31609 * 120.00002 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99767 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47455 * 89.99682 * 24 22 20 26 26 H 1.48504 * 109.46741 * 209.99950 * 24 22 20 27 27 H 1.48503 * 109.47134 * 329.99378 * 24 22 20 28 28 C 1.53039 * 109.54018 * 61.36373 * 10 9 8 29 29 C 1.46926 * 120.63122 * 5.31535 * 7 5 4 30 30 H 1.09003 * 109.47671 * 240.00164 * 1 2 3 31 31 H 1.09000 * 109.47531 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47064 * 120.00291 * 1 2 3 33 33 H 1.08995 * 109.46903 * 269.99563 * 3 2 1 34 34 H 1.08998 * 109.46730 * 29.99993 * 3 2 1 35 35 H 1.08993 * 109.46807 * 149.99537 * 3 2 1 36 36 H 1.08005 * 119.99717 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.59050 * 113.79297 * 8 7 5 38 38 H 1.09002 * 109.58650 * 353.36804 * 8 7 5 39 39 H 1.08995 * 109.49850 * 185.41360 * 9 8 7 40 40 H 1.09000 * 109.52607 * 65.32815 * 9 8 7 41 41 H 1.09004 * 109.46238 * 301.35838 * 10 9 8 42 42 H 1.09006 * 109.48483 * 181.14073 * 14 13 11 43 43 H 1.09000 * 109.48122 * 301.17069 * 14 13 11 44 44 H 1.09004 * 109.51967 * 62.29962 * 15 14 13 45 45 H 1.08996 * 109.52563 * 182.42385 * 15 14 13 46 46 H 1.09002 * 109.54268 * 297.11037 * 16 15 14 47 47 H 1.09002 * 109.54434 * 176.84657 * 16 15 14 48 48 H 0.96999 * 120.00214 * 20.22819 * 19 17 11 49 49 H 0.97007 * 120.00370 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.49446 * 58.58934 * 28 10 9 51 51 H 1.09008 * 109.49965 * 178.68583 * 28 10 9 52 52 H 1.09003 * 109.58340 * 246.20323 * 29 7 5 53 53 H 1.08997 * 109.58685 * 6.62315 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4364 -2.4257 0.0005 6 8 0.2239 -2.4278 0.0939 7 7 2.1064 -3.5906 -0.1028 8 6 1.3815 -4.8631 -0.2218 9 6 1.8823 -5.8193 0.8653 10 6 3.4036 -5.9505 0.7622 11 6 3.9037 -6.9317 1.8242 12 1 3.5598 -6.6098 2.8072 13 8 5.3322 -6.9657 1.8066 14 6 5.9072 -7.8366 2.7829 15 6 5.4415 -9.2715 2.5222 16 6 3.9109 -9.3175 2.5572 17 6 3.3575 -8.3302 1.5250 18 1 2.2691 -8.3157 1.5805 19 7 3.7739 -8.7413 0.1820 20 6 3.0947 -9.7348 -0.4713 21 1 2.2522 -10.2155 0.0037 22 6 3.4896 -10.1248 -1.7437 23 7 4.5165 -9.5393 -2.3223 24 14 2.5625 -11.4795 -2.6351 25 1 1.4589 -10.8838 -3.4302 26 1 3.4916 -12.2016 -3.5411 27 1 2.0003 -12.4304 -1.6426 28 6 4.0517 -4.5824 0.9863 29 6 3.5755 -3.6121 -0.0993 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 2.4422 1.6197 -1.0276 34 1 1.6713 2.0647 0.5138 35 1 3.2128 1.1748 0.5139 36 1 3.2520 -1.1518 0.0009 37 1 1.5654 -5.2980 -1.2041 38 1 0.3135 -4.6888 -0.0912 39 1 1.4226 -6.7981 0.7287 40 1 1.6168 -5.4263 1.8467 41 1 3.6699 -6.3204 -0.2280 42 1 6.9942 -7.7895 2.7168 43 1 5.5897 -7.5266 3.7784 44 1 5.7935 -9.5964 1.5430 45 1 5.8444 -9.9306 3.2912 46 1 3.5604 -9.0403 3.5514 47 1 3.5708 -10.3249 2.3170 48 1 4.5307 -8.3098 -0.2445 49 1 4.7923 -9.8115 -3.2117 50 1 3.7658 -4.2006 1.9664 51 1 5.1362 -4.6809 0.9359 52 1 3.9384 -3.9451 -1.0718 53 1 3.9551 -2.6125 0.1119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075399798.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:42 Heat of formation + Delta-G solvation = -80.974276 kcal Electronic energy + Delta-G solvation = -30939.654495 eV Core-core repulsion = 27003.636980 eV Total energy + Delta-G solvation = -3936.017515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.43009 -40.56453 -38.45124 -36.32795 -36.27678 -34.70672 -34.06163 -32.26687 -32.02901 -30.08270 -28.84341 -28.58943 -26.78284 -25.92518 -24.72934 -24.05170 -23.47529 -21.89844 -20.53667 -20.36483 -19.21773 -18.90774 -18.35295 -17.16810 -16.92710 -16.57882 -16.42382 -16.26575 -15.82456 -15.58393 -15.23229 -15.12146 -14.91801 -14.84047 -14.72331 -14.42882 -14.22363 -13.91035 -13.74037 -13.50976 -13.38379 -13.32089 -13.14421 -13.07283 -12.87001 -12.64005 -12.58565 -12.38131 -12.30369 -12.15556 -12.11997 -11.98261 -11.76851 -11.58286 -11.48999 -11.35170 -10.93126 -10.83575 -10.50132 -10.16722 -10.13054 -9.50125 -8.88276 -7.87743 -5.12787 0.44091 1.45945 1.46627 1.53990 2.08407 2.30944 2.57428 2.91457 3.44302 3.59919 3.69806 3.87030 3.93645 3.99779 4.05778 4.13194 4.16233 4.18531 4.21368 4.29396 4.34089 4.41302 4.50568 4.58148 4.60144 4.62382 4.71891 4.72783 4.73911 4.83431 4.86656 4.88695 4.91648 4.94098 4.96539 5.04683 5.08495 5.10022 5.14496 5.20174 5.23074 5.29183 5.44236 5.52332 5.54663 5.57027 5.60375 5.63267 5.71625 6.32909 6.48590 6.52065 7.22991 7.41491 8.20484 8.44949 9.35208 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.003166 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.044692 B = 8842.868984 C =10158.822964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.027 4.027 3 C -0.123 4.123 4 C -0.252 4.252 5 C 0.536 3.464 6 O -0.585 6.585 7 N -0.606 5.606 8 C 0.119 3.881 9 C -0.111 4.111 10 C -0.069 4.069 11 C 0.104 3.896 12 H 0.072 0.928 13 O -0.388 6.388 14 C 0.066 3.934 15 C -0.143 4.143 16 C -0.137 4.137 17 C 0.140 3.860 18 H 0.047 0.953 19 N -0.715 5.715 20 C -0.225 4.225 21 H 0.068 0.932 22 C -0.072 4.072 23 N -0.965 5.965 24 Si 0.959 3.041 25 H -0.291 1.291 26 H -0.299 1.299 27 H -0.274 1.274 28 C -0.114 4.114 29 C 0.107 3.893 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.153 0.847 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.099 0.901 43 H 0.067 0.933 44 H 0.039 0.961 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.040 0.960 48 H 0.376 0.624 49 H 0.247 0.753 50 H 0.072 0.928 51 H 0.085 0.915 52 H 0.063 0.937 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 19.516 10.918 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.029 4.029 3 C -0.179 4.179 4 C -0.273 4.273 5 C 0.330 3.670 6 O -0.468 6.468 7 N -0.338 5.338 8 C -0.004 4.004 9 C -0.149 4.149 10 C -0.088 4.088 11 C 0.046 3.954 12 H 0.090 0.910 13 O -0.307 6.307 14 C -0.010 4.010 15 C -0.181 4.181 16 C -0.177 4.177 17 C 0.031 3.969 18 H 0.065 0.935 19 N -0.356 5.356 20 C -0.357 4.357 21 H 0.086 0.914 22 C -0.264 4.264 23 N -0.616 5.616 24 Si 0.790 3.210 25 H -0.219 1.219 26 H -0.226 1.226 27 H -0.199 1.199 28 C -0.152 4.152 29 C -0.015 4.015 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.171 0.829 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.085 0.915 44 H 0.058 0.942 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.059 0.941 48 H 0.209 0.791 49 H 0.056 0.944 50 H 0.090 0.910 51 H 0.104 0.896 52 H 0.081 0.919 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.595 19.468 10.808 22.275 hybrid contribution -0.350 -1.816 -1.024 2.114 sum -0.945 17.652 9.784 20.204 Atomic orbital electron populations 1.20991 0.91924 1.01829 1.02495 1.22916 0.96487 0.95763 0.87700 1.21083 1.00381 0.92458 1.04006 1.22569 1.01225 0.90601 1.12867 1.19164 0.86974 0.85205 0.75661 1.90725 1.15606 1.87855 1.52600 1.48102 1.07824 1.05892 1.72009 1.21400 0.97174 0.83352 0.98502 1.21752 0.95143 0.99132 0.98907 1.20929 0.94386 0.94752 0.98752 1.22242 0.81116 0.93830 0.98254 0.91020 1.87860 1.19587 1.64656 1.58635 1.22624 0.98608 0.88210 0.91573 1.21971 0.96328 0.98446 1.01370 1.22149 0.96178 1.00163 0.99182 1.21085 0.96907 0.93333 0.85604 0.93535 1.42353 1.36625 1.42634 1.13988 1.19493 1.08662 1.10523 0.97033 0.91385 1.25340 0.99775 1.02619 0.98696 1.69811 1.29949 1.46365 1.15467 0.85342 0.77482 0.79668 0.78510 1.21873 1.22637 1.19929 1.21805 1.01276 0.93249 0.98851 1.21982 0.77993 1.02026 0.99487 0.91646 0.90565 0.92361 0.89089 0.89707 0.89751 0.82934 0.92732 0.90114 0.91476 0.90995 0.92526 0.88254 0.91507 0.94211 0.90305 0.90746 0.94114 0.79079 0.94422 0.90973 0.89613 0.91874 0.86620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.33 71.24 0.59 -1.75 16 2 C -0.03 -0.46 6.11 -17.62 -0.11 -0.57 16 3 C -0.12 -1.14 9.98 71.24 0.71 -0.43 16 4 C -0.25 -5.07 8.93 23.43 0.21 -4.86 16 5 C 0.54 15.05 7.60 86.57 0.66 15.71 16 6 O -0.58 -19.95 12.52 -4.06 -0.05 -20.00 16 7 N -0.61 -16.62 2.97 -823.18 -2.45 -19.06 16 8 C 0.12 3.68 6.44 86.36 0.56 4.24 16 9 C -0.11 -3.35 5.15 30.67 0.16 -3.19 16 10 C -0.07 -2.17 1.82 -10.77 -0.02 -2.19 16 11 C 0.10 3.28 1.89 30.62 0.06 3.33 16 12 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 13 O -0.39 -12.71 9.14 -148.98 -1.36 -14.08 16 14 C 0.07 1.81 6.84 72.01 0.49 2.31 16 15 C -0.14 -4.63 5.97 30.68 0.18 -4.45 16 16 C -0.14 -4.67 5.64 30.71 0.17 -4.50 16 17 C 0.14 5.30 2.31 45.08 0.10 5.40 16 18 H 0.05 1.81 6.64 -2.39 -0.02 1.79 16 19 N -0.72 -34.73 3.82 -322.52 -1.23 -35.96 16 20 C -0.22 -12.24 9.88 84.03 0.83 -11.41 16 21 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 22 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 23 N -0.96 -58.90 13.06 21.65 0.28 -58.62 16 24 Si 0.96 46.74 29.55 68.60 2.03 48.77 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 26 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 27 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 28 C -0.11 -2.79 5.18 30.67 0.16 -2.63 16 29 C 0.11 2.43 6.32 86.36 0.55 2.97 16 30 H 0.06 1.59 7.08 -2.39 -0.02 1.58 16 31 H 0.08 1.09 7.94 -2.39 -0.02 1.07 16 32 H 0.06 1.43 7.37 -2.39 -0.02 1.41 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.60 8.05 -2.39 -0.02 0.58 16 35 H 0.08 0.60 8.07 -2.39 -0.02 0.58 16 36 H 0.15 2.19 5.92 -2.91 -0.02 2.18 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 38 H 0.08 2.62 7.00 -2.39 -0.02 2.61 16 39 H 0.07 2.26 6.56 -2.39 -0.02 2.24 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.06 2.27 7.04 -2.38 -0.02 2.25 16 42 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 44 H 0.04 1.63 7.76 -2.39 -0.02 1.62 16 45 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.04 1.57 8.13 -2.39 -0.02 1.55 16 48 H 0.38 20.22 6.94 -92.71 -0.64 19.58 16 49 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 50 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.09 2.12 7.51 -2.38 -0.02 2.10 16 52 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 53 H 0.12 1.86 5.38 -2.39 -0.01 1.84 16 Total: -1.00 -69.24 401.20 3.24 -66.00 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: 0.25 Total: 38.61 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.77 Total: -5.67 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -3.40 Total: -113.64 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.41 Total: -34.07 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -69.24 3.24 -66.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075399798.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.973 kcal (2) G-P(sol) polarization free energy of solvation -69.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds