Wall clock time and date at job start Tue Mar 31 2020 20:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50708 * 119.99792 * 2 1 4 4 C 1.32993 * 120.00561 * 179.97438 * 2 1 3 5 5 C 1.47104 * 120.00401 * 180.02562 * 4 2 1 6 6 O 1.21614 * 119.99990 * 354.92453 * 5 4 2 7 7 N 1.34772 * 119.99896 * 174.92313 * 5 4 2 8 8 C 1.46925 * 120.63170 * 4.96714 * 7 5 4 9 9 C 1.53624 * 108.54181 * 126.36859 * 8 7 5 10 10 C 1.53036 * 109.24144 * 54.85833 * 9 8 7 11 11 C 1.53002 * 109.46114 * 178.48948 * 10 9 8 12 12 O 1.42903 * 109.47115 * 295.06755 * 11 10 9 13 13 C 1.42901 * 113.99897 * 179.97438 * 12 11 10 14 14 H 1.09000 * 110.88828 * 26.12182 * 13 12 11 15 15 C 1.55157 * 111.00082 * 150.00011 * 13 12 11 16 16 C 1.54328 * 102.94192 * 153.57917 * 15 13 12 17 17 N 1.47024 * 107.26718 * 337.80528 * 16 15 13 18 18 C 1.36942 * 125.64411 * 178.96109 * 17 16 15 19 19 H 1.07995 * 119.99327 * 179.97438 * 18 17 16 20 20 C 1.38814 * 120.00143 * 359.97438 * 18 17 16 21 21 N 1.31624 * 119.99663 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99995 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46968 * 59.99587 * 22 20 18 24 24 H 1.48500 * 109.46849 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46875 * 299.99711 * 22 20 18 26 26 C 1.47420 * 108.70623 * 358.94384 * 17 16 15 27 27 C 1.53042 * 109.54122 * 298.50867 * 10 9 8 28 28 C 1.46924 * 120.62773 * 185.24784 * 7 5 4 29 29 H 1.09006 * 109.46571 * 90.00417 * 1 2 3 30 30 H 1.08998 * 109.47714 * 330.00580 * 1 2 3 31 31 H 1.08995 * 109.46963 * 210.00210 * 1 2 3 32 32 H 1.08995 * 109.46901 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.47165 * 119.99608 * 3 2 1 34 34 H 1.09001 * 109.46910 * 239.99605 * 3 2 1 35 35 H 1.08003 * 119.99604 * 0.02562 * 4 2 1 36 36 H 1.09001 * 109.58708 * 246.19820 * 8 7 5 37 37 H 1.08999 * 109.58660 * 6.62660 * 8 7 5 38 38 H 1.08997 * 109.63765 * 294.86265 * 9 8 7 39 39 H 1.09003 * 109.45844 * 174.73655 * 9 8 7 40 40 H 1.09005 * 109.46264 * 58.52988 * 10 9 8 41 41 H 1.09002 * 109.47327 * 55.06317 * 11 10 9 42 42 H 1.08999 * 109.47507 * 175.06912 * 11 10 9 43 43 H 1.09006 * 110.71816 * 271.94052 * 15 13 12 44 44 H 1.08997 * 110.72318 * 35.03223 * 15 13 12 45 45 H 1.09000 * 109.88356 * 97.21940 * 16 15 13 46 46 H 1.08998 * 109.88233 * 218.23333 * 16 15 13 47 47 H 0.96998 * 119.99606 * 179.97438 * 21 20 18 48 48 H 1.09007 * 110.36434 * 265.28904 * 26 17 16 49 49 H 1.08999 * 110.36961 * 142.96737 * 26 17 16 50 50 H 1.09008 * 109.49505 * 301.41628 * 27 10 9 51 51 H 1.08991 * 109.52929 * 181.33324 * 27 10 9 52 52 H 1.08997 * 109.59065 * 353.37242 * 28 7 5 53 53 H 1.09004 * 109.58440 * 113.79927 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1721 -1.1517 0.0005 5 6 3.6431 -1.1516 0.0011 6 8 4.2512 -0.1026 -0.0921 7 7 4.3169 -2.3142 0.1049 8 6 3.6005 -3.5969 0.1090 9 6 4.2019 -4.4958 -0.9820 10 6 5.7110 -4.6185 -0.7592 11 6 6.3095 -5.5433 -1.8211 12 8 5.7919 -6.8641 -1.6490 13 6 6.2897 -7.8115 -2.5959 14 1 7.2693 -7.5112 -2.9678 15 6 6.3403 -9.2361 -1.9832 16 6 6.2136 -10.1493 -3.2207 17 7 5.5819 -9.3563 -4.2855 18 6 5.3102 -9.7959 -5.5536 19 1 4.8412 -9.1331 -6.2658 20 6 5.6374 -11.0931 -5.9236 21 7 6.2094 -11.9005 -5.0556 22 14 5.2661 -11.6930 -7.6532 23 1 5.9884 -10.8464 -8.6365 24 1 5.7101 -13.1030 -7.7941 25 1 3.8050 -11.6061 -7.9042 26 6 5.2892 -8.0097 -3.7617 27 6 6.3580 -3.2356 -0.8644 28 6 5.7814 -2.3226 0.2223 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3634 0.8900 0.5137 31 1 -0.3633 -0.8899 0.5138 32 1 1.5521 2.1336 -0.0005 33 1 2.8871 1.3630 0.8900 34 1 2.8872 1.3629 -0.8900 35 1 1.6321 -2.0870 0.0005 36 1 3.7120 -4.0747 1.0823 37 1 2.5440 -3.4261 -0.0977 38 1 4.0132 -4.0583 -1.9623 39 1 3.7451 -5.4842 -0.9308 40 1 5.8994 -5.0332 0.2311 41 1 6.0459 -5.1762 -2.8130 42 1 7.3944 -5.5619 -1.7170 43 1 7.2903 -9.4040 -1.4756 44 1 5.5063 -9.3914 -1.2988 45 1 7.2020 -10.4791 -3.5409 46 1 5.5940 -11.0136 -2.9818 47 1 6.4377 -12.8071 -5.3140 48 1 4.2640 -7.9602 -3.3944 49 1 5.4530 -7.2583 -4.5341 50 1 6.1491 -2.8098 -1.8458 51 1 7.4357 -3.3264 -0.7292 52 1 6.1645 -1.3107 0.0904 53 1 6.0671 -2.6985 1.2048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088225762.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:50 Heat of formation + Delta-G solvation = -64.962749 kcal Electronic energy + Delta-G solvation = -29233.292014 eV Core-core repulsion = 25297.968811 eV Total energy + Delta-G solvation = -3935.323203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.30001 -39.98386 -38.86637 -37.39287 -36.29125 -34.67622 -33.89539 -32.16272 -31.09730 -29.52395 -28.86833 -28.63271 -27.73163 -26.27375 -24.35299 -24.16772 -22.13232 -21.96934 -21.75425 -20.57200 -19.00996 -18.93218 -18.33086 -17.89316 -16.71369 -16.63722 -16.44190 -16.27757 -15.92811 -15.62758 -15.36745 -15.03923 -14.96247 -14.79805 -14.59673 -14.34617 -14.16220 -13.89755 -13.80661 -13.71087 -13.40534 -13.24105 -13.14225 -13.08650 -12.93232 -12.69332 -12.64336 -12.40130 -12.28611 -12.18991 -12.14111 -12.07757 -11.80094 -11.68719 -11.55312 -11.38807 -11.33878 -10.71932 -10.52421 -10.39789 -10.17306 -9.51394 -8.93320 -7.86459 -5.23416 0.41718 1.45592 1.49250 1.55628 2.08500 2.28774 2.45027 2.65773 3.31875 3.58010 3.69679 3.71903 3.81621 3.89442 3.93042 3.98796 4.07678 4.11902 4.16343 4.19277 4.36105 4.42721 4.45307 4.57712 4.58691 4.63952 4.66306 4.69766 4.74898 4.76615 4.86555 4.87162 4.90159 4.92180 4.94942 4.97323 5.04238 5.05334 5.08208 5.10055 5.19221 5.25418 5.42275 5.43647 5.53547 5.56131 5.62808 5.70172 5.72618 6.15431 6.36721 6.46539 7.07707 7.21769 7.73925 8.38342 9.23617 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.001931 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.805919 B =14496.487707 C =15363.025579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.029 4.029 3 C -0.115 4.115 4 C -0.255 4.255 5 C 0.537 3.463 6 O -0.583 6.583 7 N -0.611 5.611 8 C 0.109 3.891 9 C -0.125 4.125 10 C -0.077 4.077 11 C 0.061 3.939 12 O -0.378 6.378 13 C 0.093 3.907 14 H 0.073 0.927 15 C -0.126 4.126 16 C 0.186 3.814 17 N -0.626 5.626 18 C -0.247 4.247 19 H 0.082 0.918 20 C -0.067 4.067 21 N -0.951 5.951 22 Si 0.982 3.018 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.277 1.277 26 C 0.117 3.883 27 C -0.119 4.119 28 C 0.114 3.886 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.150 0.850 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.017 0.983 46 H 0.010 0.990 47 H 0.248 0.752 48 H 0.024 0.976 49 H 0.040 0.960 50 H 0.057 0.943 51 H 0.092 0.908 52 H 0.079 0.921 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 23.359 14.972 28.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.030 4.030 3 C -0.171 4.171 4 C -0.276 4.276 5 C 0.331 3.669 6 O -0.466 6.466 7 N -0.343 5.343 8 C -0.013 4.013 9 C -0.163 4.163 10 C -0.095 4.095 11 C -0.015 4.015 12 O -0.297 6.297 13 C 0.034 3.966 14 H 0.091 0.909 15 C -0.164 4.164 16 C 0.061 3.939 17 N -0.354 5.354 18 C -0.375 4.375 19 H 0.100 0.900 20 C -0.260 4.260 21 N -0.599 5.599 22 Si 0.810 3.190 23 H -0.202 1.202 24 H -0.219 1.219 25 H -0.203 1.203 26 C -0.008 4.008 27 C -0.158 4.158 28 C -0.009 4.009 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.167 0.833 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.036 0.964 46 H 0.029 0.971 47 H 0.058 0.942 48 H 0.042 0.958 49 H 0.058 0.942 50 H 0.075 0.925 51 H 0.111 0.889 52 H 0.097 0.903 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.866 23.663 14.968 28.829 hybrid contribution 0.294 -0.863 -1.372 1.647 sum -6.572 22.800 13.596 27.347 Atomic orbital electron populations 1.21090 0.88667 1.04499 1.03902 1.22910 0.97597 0.94729 0.87814 1.20982 0.99235 0.94316 1.02573 1.22601 0.91918 1.00272 1.12764 1.19046 0.89370 0.82859 0.75668 1.90735 1.71403 1.32015 1.52430 1.48133 1.07551 1.06439 1.72155 1.22050 0.97253 0.82283 0.99725 1.21957 0.95325 1.00321 0.98673 1.21068 0.95357 0.93802 0.99312 1.22721 0.97802 0.82315 0.98696 1.87837 1.69503 1.18692 1.53655 1.23020 0.95784 0.89013 0.88776 0.90878 1.22824 1.02746 0.93282 0.97535 1.20912 0.95589 0.91866 0.85560 1.44660 1.71286 1.09678 1.09786 1.19416 1.33678 0.96455 0.87984 0.90045 1.25709 1.01263 0.96680 1.02302 1.70172 1.47879 1.06768 1.35106 0.85103 0.78016 0.76798 0.79105 1.20179 1.21872 1.20280 1.22023 0.96976 0.86885 0.94955 1.21830 1.01114 0.93726 0.99083 1.21577 0.79230 1.00826 0.99228 0.89295 0.89765 0.89883 0.90823 0.91812 0.91821 0.83255 0.89778 0.87917 0.92612 0.90129 0.89440 0.93975 0.92348 0.89491 0.90776 0.96438 0.97143 0.94242 0.95768 0.94175 0.92454 0.88943 0.90276 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.98 71.24 0.71 -0.24 16 2 C -0.03 -0.41 6.11 -17.61 -0.11 -0.52 16 3 C -0.11 -1.92 8.33 71.24 0.59 -1.33 16 4 C -0.26 -4.12 8.94 23.43 0.21 -3.91 16 5 C 0.54 11.69 7.60 86.57 0.66 12.35 16 6 O -0.58 -16.22 12.52 -4.08 -0.05 -16.27 16 7 N -0.61 -11.14 2.97 -822.34 -2.44 -13.58 16 8 C 0.11 1.55 6.35 86.51 0.55 2.09 16 9 C -0.12 -2.21 5.29 30.82 0.16 -2.05 16 10 C -0.08 -1.37 2.39 -10.77 -0.03 -1.40 16 11 C 0.06 1.39 5.15 71.98 0.37 1.76 16 12 O -0.38 -11.14 9.66 -148.98 -1.44 -12.58 16 13 C 0.09 3.25 3.54 31.99 0.11 3.37 16 14 H 0.07 2.47 7.83 -2.39 -0.02 2.45 16 15 C -0.13 -4.72 6.69 31.78 0.21 -4.51 16 16 C 0.19 9.34 5.37 86.73 0.47 9.81 16 17 N -0.63 -33.08 3.39 -691.99 -2.35 -35.43 16 18 C -0.25 -14.08 10.28 84.03 0.86 -13.22 16 19 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 20 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 21 N -0.95 -57.58 10.31 21.65 0.22 -57.35 16 22 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 C 0.12 4.97 6.97 86.85 0.61 5.58 16 27 C -0.12 -1.92 5.36 30.67 0.16 -1.75 16 28 C 0.11 1.93 6.44 86.36 0.56 2.49 16 29 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.08 0.46 8.05 -2.39 -0.02 0.44 16 31 H 0.08 0.47 8.07 -2.39 -0.02 0.45 16 32 H 0.07 0.86 7.94 -2.39 -0.02 0.84 16 33 H 0.06 1.27 7.36 -2.39 -0.02 1.25 16 34 H 0.06 1.35 7.09 -2.39 -0.02 1.33 16 35 H 0.15 1.67 5.91 -2.91 -0.02 1.66 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.14 5.37 -2.39 -0.01 1.13 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.59 7.79 -2.39 -0.02 1.57 16 40 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.21 8.12 -2.39 -0.02 1.19 16 43 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 44 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.02 0.97 7.38 -2.39 -0.02 0.95 16 46 H 0.01 0.58 7.51 -2.39 -0.02 0.57 16 47 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 49 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 51 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.08 1.59 6.99 -2.39 -0.02 1.58 16 53 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -71.70 409.24 3.40 -68.29 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.86 Total: 13.77 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 6.57 Total: 5.16 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -4.56 Total: -106.36 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -1.49 Total: -28.86 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -71.70 3.40 -68.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088225762.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.330 kcal (2) G-P(sol) polarization free energy of solvation -71.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds