Wall clock time and date at job start Tue Mar 31 2020 19:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46826 * 2 1 4 4 C 1.52995 * 109.46992 * 119.99613 * 2 1 3 5 5 H 1.09000 * 115.55605 * 319.68367 * 4 2 1 6 6 C 1.53008 * 117.49816 * 174.00940 * 4 2 1 7 7 C 1.53000 * 117.51369 * 105.38398 * 4 2 1 8 8 H 1.09012 * 117.50021 * 214.97146 * 7 4 2 9 9 C 1.50701 * 117.50241 * 359.97438 * 7 4 2 10 10 O 1.21291 * 119.99554 * 324.61363 * 9 7 4 11 11 N 1.34771 * 120.00340 * 144.61459 * 9 7 4 12 12 C 1.46924 * 120.62854 * 359.72319 * 11 9 7 13 13 C 1.52770 * 109.00694 * 233.58358 * 12 11 9 14 14 C 1.53033 * 109.38212 * 305.58841 * 13 12 11 15 15 O 1.42905 * 109.46120 * 181.26037 * 14 13 12 16 16 C 1.42901 * 113.99826 * 89.93171 * 15 14 13 17 17 C 1.53939 * 113.73726 * 248.73989 * 16 15 14 18 18 N 1.47812 * 86.03813 * 222.08418 * 17 16 15 19 19 C 1.36937 * 134.45976 * 204.64094 * 18 17 16 20 20 H 1.08004 * 119.99746 * 179.86959 * 19 18 17 21 21 C 1.38803 * 120.00022 * 359.87496 * 19 18 17 22 22 N 1.31619 * 120.00343 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00170 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46926 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46777 * 120.00007 * 23 21 19 26 26 H 1.48490 * 109.47066 * 239.99924 * 23 21 19 27 27 C 1.47588 * 91.04690 * 24.55319 * 18 17 16 28 28 C 1.53047 * 109.54082 * 61.23789 * 14 13 12 29 29 C 1.46929 * 120.63264 * 180.02562 * 11 9 7 30 30 H 1.09005 * 109.47134 * 302.08444 * 1 2 3 31 31 H 1.09002 * 109.47050 * 62.07942 * 1 2 3 32 32 H 1.08996 * 109.47306 * 182.07915 * 1 2 3 33 33 H 1.08995 * 109.47071 * 240.00124 * 2 1 3 34 34 H 1.09007 * 109.47091 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47469 * 299.99932 * 3 2 1 36 36 H 1.08995 * 109.47195 * 60.00199 * 3 2 1 37 37 H 1.08990 * 117.49462 * 359.97438 * 6 4 2 38 38 H 1.08998 * 117.49613 * 144.97615 * 6 4 2 39 39 H 1.08999 * 109.58706 * 353.41710 * 12 11 9 40 40 H 1.09004 * 109.59055 * 113.84582 * 12 11 9 41 41 H 1.09000 * 109.56632 * 185.55246 * 13 12 11 42 42 H 1.09004 * 109.38310 * 65.51338 * 13 12 11 43 43 H 1.09000 * 109.46176 * 301.21962 * 14 13 12 44 44 H 1.08995 * 112.94734 * 20.33259 * 16 15 14 45 45 H 1.09001 * 113.77507 * 336.35205 * 17 16 15 46 46 H 1.09004 * 113.76687 * 107.75098 * 17 16 15 47 47 H 0.96997 * 120.00410 * 180.02562 * 22 21 19 48 48 H 1.09002 * 113.76457 * 221.14720 * 27 18 17 49 49 H 1.08997 * 113.87089 * 89.76717 * 27 18 17 50 50 H 1.09000 * 109.49675 * 178.68247 * 28 14 13 51 51 H 1.08996 * 109.49511 * 58.58872 * 28 14 13 52 52 H 1.09005 * 109.58466 * 246.15692 * 29 11 9 53 53 H 1.08997 * 109.58249 * 6.57908 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.4897 -0.5167 2.1677 6 6 3.5480 -0.9519 1.3657 7 6 2.6149 -2.1274 1.0684 8 1 2.4430 -2.8482 1.8679 9 6 2.6352 -2.6968 -0.3268 10 8 1.7336 -2.4445 -1.0979 11 7 3.6551 -3.4864 -0.7177 12 6 4.7573 -3.7961 0.2031 13 6 6.0823 -3.4433 -0.4705 14 6 6.1715 -4.1574 -1.8211 15 8 7.4230 -3.8519 -2.4395 16 6 8.4733 -4.7620 -2.1067 17 6 9.5760 -4.1417 -1.2298 18 7 10.5298 -4.8662 -2.0959 19 6 11.8086 -5.3293 -1.9371 20 1 12.3006 -5.8457 -2.7481 21 6 12.4726 -5.1351 -0.7337 22 7 11.8733 -4.5054 0.2545 23 14 14.2170 -5.7674 -0.5167 24 1 14.6609 -6.4342 -1.7671 25 1 15.1220 -4.6294 -0.2150 26 1 14.2548 -6.7406 0.6042 27 6 9.5499 -4.8920 -3.1993 28 6 5.0284 -3.6887 -2.7244 29 6 3.6891 -4.0485 -2.0748 30 1 -0.3634 0.5459 0.8707 31 1 -0.3633 0.4812 -0.9081 32 1 -0.3634 -1.0269 0.0373 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 4.1767 -0.5903 0.5520 38 1 3.9899 -0.8988 2.3606 39 1 4.6461 -3.2112 1.1161 40 1 4.7447 -4.8592 0.4438 41 1 6.9101 -3.7601 0.1639 42 1 6.1340 -2.3654 -0.6248 43 1 6.0954 -5.2340 -1.6683 44 1 8.1051 -5.7190 -1.7372 45 1 9.6446 -3.0569 -1.3119 46 1 9.5651 -4.4916 -0.1975 47 1 12.3374 -4.3693 1.0953 48 1 9.5184 -5.8399 -3.7366 49 1 9.6095 -4.0291 -3.8624 50 1 5.1062 -4.1803 -3.6942 51 1 5.0895 -2.6086 -2.8576 52 1 3.5873 -5.1326 -2.0239 53 1 2.8732 -3.6300 -2.6640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093587695.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:43 Heat of formation + Delta-G solvation = -24.918342 kcal Electronic energy + Delta-G solvation = -30046.263522 eV Core-core repulsion = 26112.676775 eV Total energy + Delta-G solvation = -3933.586747 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.62714 -40.33677 -39.05850 -37.94947 -36.73757 -34.46077 -34.10150 -32.61534 -32.11102 -29.45033 -27.99004 -26.71036 -26.59438 -25.00338 -24.67493 -23.92658 -23.72436 -21.95029 -21.26495 -20.78546 -19.64330 -18.79075 -18.26848 -17.67263 -17.01896 -16.91543 -16.80997 -15.96203 -15.82357 -15.76376 -15.39000 -15.24912 -14.87449 -14.84498 -14.59098 -14.23658 -14.06302 -13.86492 -13.60032 -13.48894 -13.23082 -13.19459 -13.11684 -12.96665 -12.86554 -12.81276 -12.77367 -12.26382 -12.19667 -12.07929 -12.06571 -11.88037 -11.81320 -11.59557 -11.50572 -11.39579 -11.05909 -10.91924 -10.88842 -10.56837 -10.21355 -9.67422 -8.97490 -7.92966 -5.27976 1.46083 1.47421 1.55674 1.57836 1.94680 2.41756 2.71747 2.78179 3.26986 3.42466 3.45991 3.67593 3.76297 3.82711 3.88304 3.94945 4.06625 4.08486 4.11868 4.18678 4.26412 4.32149 4.38700 4.46089 4.50190 4.55012 4.66373 4.75030 4.76922 4.80344 4.83744 4.85748 4.86937 4.90514 4.92929 4.97156 4.99843 5.04713 5.05854 5.17467 5.20479 5.21659 5.23906 5.32811 5.37180 5.48342 5.49024 5.53658 5.62824 5.88488 6.38467 6.47037 6.89192 7.16817 7.56891 8.51933 9.24292 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.002218 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.151398 B =12621.306173 C =13285.070955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.113 4.113 5 H 0.128 0.872 6 C -0.149 4.149 7 C -0.191 4.191 8 H 0.150 0.850 9 C 0.540 3.460 10 O -0.566 6.566 11 N -0.608 5.608 12 C 0.116 3.884 13 C -0.153 4.153 14 C 0.085 3.915 15 O -0.383 6.383 16 C 0.071 3.929 17 C 0.149 3.851 18 N -0.640 5.640 19 C -0.236 4.236 20 H 0.087 0.913 21 C -0.067 4.067 22 N -0.952 5.952 23 Si 0.983 3.017 24 H -0.265 1.265 25 H -0.293 1.293 26 H -0.288 1.288 27 C 0.118 3.882 28 C -0.121 4.121 29 C 0.117 3.883 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.010 0.990 46 H 0.048 0.952 47 H 0.250 0.750 48 H 0.067 0.933 49 H 0.042 0.958 50 H 0.091 0.909 51 H 0.057 0.943 52 H 0.087 0.913 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.106 4.462 2.926 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.100 4.100 3 C -0.199 4.199 4 C -0.131 4.131 5 H 0.146 0.854 6 C -0.187 4.187 7 C -0.211 4.211 8 H 0.167 0.833 9 C 0.330 3.670 10 O -0.446 6.446 11 N -0.340 5.340 12 C -0.006 4.006 13 C -0.191 4.191 14 C 0.027 3.973 15 O -0.301 6.301 16 C 0.012 3.988 17 C 0.024 3.976 18 N -0.368 5.368 19 C -0.364 4.364 20 H 0.104 0.896 21 C -0.260 4.260 22 N -0.601 5.601 23 Si 0.810 3.190 24 H -0.189 1.189 25 H -0.220 1.220 26 H -0.215 1.215 27 C -0.007 4.007 28 C -0.159 4.159 29 C -0.005 4.005 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.144 0.856 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.116 0.884 45 H 0.028 0.972 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.085 0.915 49 H 0.060 0.940 50 H 0.109 0.891 51 H 0.076 0.924 52 H 0.106 0.894 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.280 4.678 2.522 23.879 hybrid contribution 1.379 -0.193 0.215 1.409 sum -21.901 4.484 2.737 22.522 Atomic orbital electron populations 1.21616 0.94614 1.01076 1.01361 1.20897 0.96486 0.95778 0.96803 1.21792 1.00678 0.95488 1.01929 1.22503 0.96116 0.94220 1.00258 0.85442 1.23139 0.92944 0.98368 1.04208 1.22309 1.09684 0.93943 0.95172 0.83282 1.20177 0.80821 0.77147 0.88878 1.90635 1.37900 1.59992 1.56055 1.48251 1.22484 1.49031 1.14264 1.21734 0.83581 1.02615 0.92682 1.22316 0.98163 1.01469 0.97170 1.22297 0.83530 0.99094 0.92354 1.87934 1.19040 1.52847 1.70304 1.24441 0.85601 0.92490 0.96231 1.22638 0.85813 0.93571 0.95610 1.46113 1.12768 1.65165 1.12795 1.19448 0.89020 1.29375 0.98542 0.89566 1.25690 1.02765 1.01504 0.96075 1.70014 1.38227 1.47542 1.04323 0.84953 0.78945 0.77147 0.77919 1.18875 1.22044 1.21463 1.22879 0.86386 0.99557 0.91896 1.21900 0.92575 1.01947 0.99495 1.21575 0.97065 0.99358 0.82515 0.91817 0.93475 0.93742 0.91739 0.93185 0.93085 0.91627 0.89695 0.85557 0.87416 0.89477 0.90691 0.92066 0.90768 0.88380 0.97207 0.93358 0.94102 0.91486 0.93976 0.89091 0.92426 0.89435 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.19 71.98 0.66 -1.62 16 2 C -0.08 -1.52 2.33 -10.79 -0.03 -1.54 16 3 C -0.14 -2.29 9.09 71.98 0.65 -1.63 16 4 C -0.11 -1.69 5.06 -10.79 -0.05 -1.75 16 5 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 6 C -0.15 -2.06 8.66 30.60 0.26 -1.80 16 7 C -0.19 -2.96 4.51 -11.54 -0.05 -3.01 16 8 H 0.15 1.67 8.14 -2.38 -0.02 1.65 16 9 C 0.54 11.68 6.81 87.66 0.60 12.28 16 10 O -0.57 -15.83 13.60 -3.06 -0.04 -15.88 16 11 N -0.61 -11.75 2.98 -819.79 -2.44 -14.19 16 12 C 0.12 1.92 6.30 86.22 0.54 2.47 16 13 C -0.15 -3.44 5.68 30.53 0.17 -3.27 16 14 C 0.08 2.07 2.57 30.62 0.08 2.15 16 15 O -0.38 -12.64 10.01 -148.98 -1.49 -14.13 16 16 C 0.07 2.65 4.44 31.25 0.14 2.79 16 17 C 0.15 7.21 7.36 86.44 0.64 7.85 16 18 N -0.64 -33.48 3.70 -720.82 -2.67 -36.14 16 19 C -0.24 -13.32 10.70 84.03 0.90 -12.42 16 20 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 21 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 22 N -0.95 -57.16 11.39 21.65 0.25 -56.92 16 23 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 24 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 C 0.12 4.87 8.77 86.48 0.76 5.63 16 28 C -0.12 -2.57 5.73 30.66 0.18 -2.39 16 29 C 0.12 2.23 6.43 86.35 0.56 2.78 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 1.62 5.17 -2.39 -0.01 1.60 16 34 H 0.05 0.83 7.72 -2.38 -0.02 0.81 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.46 7.99 -2.39 -0.02 1.44 16 38 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.11 1.45 5.63 -2.39 -0.01 1.44 16 40 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.07 1.62 7.43 -2.39 -0.02 1.60 16 44 H 0.10 3.32 7.47 -2.39 -0.02 3.30 16 45 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.05 2.53 7.17 -2.38 -0.02 2.52 16 47 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 48 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 53 H 0.09 1.85 7.00 -2.39 -0.02 1.84 16 Total: -1.00 -70.60 411.80 2.97 -67.63 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.86 Total: 19.10 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 6.47 Total: 3.13 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -4.87 Total: -107.26 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -1.53 Total: -30.00 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.60 2.97 -67.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093587695.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.712 kcal (2) G-P(sol) polarization free energy of solvation -70.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds