Wall clock time and date at job start Tue Mar 31 2020 21:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47249 * 2 1 4 4 C 1.52992 * 109.47248 * 239.99530 * 2 1 3 5 5 C 1.50697 * 109.47219 * 60.00581 * 4 2 1 6 6 O 1.21284 * 119.99798 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00242 * 180.02562 * 5 4 2 8 8 C 1.46506 * 120.00107 * 179.97438 * 7 5 4 9 9 C 1.52993 * 109.47216 * 179.97438 * 8 7 5 10 10 C 1.53518 * 111.59272 * 297.81874 * 9 8 7 11 11 C 1.54254 * 106.55355 * 241.45651 * 10 9 8 12 12 C 1.54740 * 104.13867 * 334.63042 * 11 10 9 13 13 C 1.54672 * 111.23044 * 178.41300 * 9 8 7 14 14 H 1.09002 * 112.39312 * 19.49086 * 13 9 8 15 15 N 1.47254 * 106.10483 * 256.40852 * 13 9 8 16 16 C 1.36937 * 126.52051 * 150.07037 * 15 13 9 17 17 H 1.08002 * 119.99616 * 342.29620 * 16 15 13 18 18 C 1.38807 * 120.00060 * 162.30123 * 16 15 13 19 19 N 1.31618 * 120.00047 * 158.07291 * 18 16 15 20 20 Si 1.86801 * 120.00106 * 338.06943 * 18 16 15 21 21 H 1.48503 * 109.46930 * 84.58029 * 20 18 16 22 22 H 1.48499 * 109.47153 * 204.57693 * 20 18 16 23 23 H 1.48496 * 109.47068 * 324.57933 * 20 18 16 24 24 C 1.47301 * 107.00770 * 330.12692 * 15 13 9 25 25 C 1.53688 * 111.17280 * 61.01662 * 9 8 7 26 26 C 1.53002 * 109.47062 * 119.99647 * 2 1 3 27 27 C 1.52998 * 117.49894 * 13.74878 * 26 2 1 28 28 C 1.53002 * 117.50019 * 305.08924 * 26 2 1 29 29 H 1.09004 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47375 * 300.00141 * 1 2 3 31 31 H 1.09003 * 109.47448 * 60.00328 * 1 2 3 32 32 H 0.96692 * 114.00014 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47510 * 300.00081 * 4 2 1 34 34 H 1.09003 * 109.47318 * 179.97438 * 4 2 1 35 35 H 0.96994 * 120.00123 * 359.97438 * 7 5 4 36 36 H 1.09004 * 109.46877 * 60.00030 * 8 7 5 37 37 H 1.09003 * 109.47002 * 300.00221 * 8 7 5 38 38 H 1.08992 * 110.03714 * 0.72737 * 10 9 8 39 39 H 1.08997 * 110.04025 * 122.18081 * 10 9 8 40 40 H 1.08995 * 110.49570 * 215.97200 * 11 10 9 41 41 H 1.08991 * 110.49793 * 93.29542 * 11 10 9 42 42 H 1.09000 * 110.65129 * 279.09525 * 12 11 10 43 43 H 1.09008 * 110.78971 * 156.08323 * 12 11 10 44 44 H 0.96997 * 120.00134 * 179.97438 * 19 18 16 45 45 H 1.09001 * 110.07937 * 271.60380 * 24 15 13 46 46 H 1.09003 * 110.17365 * 149.96764 * 24 15 13 47 47 H 1.08992 * 110.22833 * 241.06441 * 25 9 8 48 48 H 1.08998 * 110.22393 * 2.93801 * 25 9 8 49 49 H 1.08999 * 115.55067 * 159.41775 * 26 2 1 50 50 H 1.09004 * 117.49939 * 359.97438 * 27 26 2 51 51 H 1.08999 * 117.49941 * 145.01923 * 27 26 2 52 52 H 1.08997 * 117.50066 * 214.98016 * 28 26 2 53 53 H 1.09005 * 117.49614 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 8 0.8402 0.9749 -2.3684 7 7 1.8630 -0.4718 -3.7037 8 6 1.3743 0.2185 -4.9000 9 6 1.8844 -0.5027 -6.1491 10 6 3.4175 -0.4837 -6.2259 11 6 3.7834 0.2758 -7.5177 12 6 2.5466 0.0899 -8.4288 13 6 1.3587 0.1707 -7.4385 14 1 1.0223 1.1930 -7.2657 15 7 0.2786 -0.6953 -7.9404 16 6 -0.8195 -0.2971 -8.6551 17 1 -1.1120 0.7425 -8.6611 18 6 -1.5567 -1.2297 -9.3718 19 7 -2.8072 -0.9739 -9.6930 20 14 -0.7739 -2.8476 -9.8806 21 1 -0.8787 -3.8209 -8.7639 22 1 -1.4776 -3.3847 -11.0729 23 1 0.6568 -2.6236 -10.2094 24 6 0.6022 -2.0714 -7.5267 25 6 1.3736 -1.9513 -6.2012 26 6 2.0399 -0.7212 1.2493 27 6 1.0326 -1.5532 2.0454 28 6 1.5399 -0.2224 2.6066 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.9702 1.4236 0.0004 33 1 1.6767 -1.7489 -1.2491 34 1 3.1300 -0.7209 -1.2493 35 1 2.4206 -1.2604 -3.7927 36 1 1.7377 1.2462 -4.9004 37 1 0.2842 0.2186 -4.8996 38 1 3.8285 0.0338 -5.3592 39 1 3.8019 -1.5027 -6.2701 40 1 4.6676 -0.1624 -7.9806 41 1 3.9462 1.3325 -7.3061 42 1 2.5730 -0.8834 -8.9189 43 1 2.4864 0.8893 -9.1674 44 1 -3.3222 -1.6254 -10.1941 45 1 1.2259 -2.5519 -8.2806 46 1 -0.3131 -2.6440 -7.3767 47 1 2.2123 -2.6473 -6.1887 48 1 0.7094 -2.1471 -5.3594 49 1 3.0646 -1.0888 1.1946 50 1 0.0063 -1.5864 1.6794 51 1 1.3946 -2.4679 2.5148 52 1 2.2354 -0.2622 3.4448 53 1 0.8472 0.6192 2.6094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107372122.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:42 Heat of formation + Delta-G solvation = -62.186801 kcal Electronic energy + Delta-G solvation = -30738.442694 eV Core-core repulsion = 26803.239865 eV Total energy + Delta-G solvation = -3935.202829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.56132 -40.83300 -39.28031 -36.47715 -36.20228 -35.29257 -33.83193 -32.78663 -32.05266 -30.00326 -28.84041 -28.52072 -25.96961 -25.26603 -24.51197 -23.20752 -22.67618 -21.77599 -20.90429 -20.53908 -19.84542 -18.96630 -18.25039 -17.39044 -17.28658 -16.99343 -16.64832 -16.35886 -16.05652 -15.67355 -15.55925 -15.34329 -14.95946 -14.81302 -14.70882 -14.24276 -14.18154 -14.05766 -13.89394 -13.66300 -13.32729 -13.13841 -12.80296 -12.74905 -12.63735 -12.39651 -12.28707 -12.07611 -12.03861 -11.87722 -11.86814 -11.77706 -11.52620 -11.43794 -11.37388 -11.33057 -11.07627 -11.05851 -10.91232 -10.83013 -10.42834 -9.94970 -9.06326 -8.17808 -5.42966 1.27192 1.36741 1.45918 1.80378 2.24407 2.40484 2.83879 3.03107 3.26321 3.52719 3.61473 3.64286 3.69008 3.71816 3.79477 4.01984 4.11362 4.18934 4.20344 4.31858 4.33442 4.39085 4.40584 4.42933 4.54892 4.60617 4.64849 4.75160 4.79798 4.80193 4.83861 4.86295 4.93442 4.96384 5.01153 5.03965 5.06269 5.07278 5.14195 5.23931 5.29918 5.31307 5.33672 5.40226 5.43900 5.48399 5.56058 5.63123 5.70362 6.10808 6.71097 6.76661 7.01351 7.45352 7.54308 8.14341 9.02651 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.002754 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.081621 B =10163.459758 C =10877.082590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.179 3.821 3 O -0.564 6.564 4 C -0.156 4.156 5 C 0.503 3.497 6 O -0.569 6.569 7 N -0.713 5.713 8 C 0.155 3.845 9 C -0.071 4.071 10 C -0.100 4.100 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.155 3.845 14 H 0.053 0.947 15 N -0.617 5.617 16 C -0.227 4.227 17 H 0.053 0.947 18 C -0.043 4.043 19 N -0.962 5.962 20 Si 0.950 3.050 21 H -0.269 1.269 22 H -0.312 1.312 23 H -0.264 1.264 24 C 0.102 3.898 25 C -0.111 4.111 26 C -0.180 4.180 27 C -0.176 4.176 28 C -0.175 4.175 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.382 0.618 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.415 0.585 36 H 0.058 0.942 37 H 0.029 0.971 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.261 0.739 45 H 0.028 0.972 46 H 0.034 0.966 47 H 0.107 0.893 48 H 0.067 0.933 49 H 0.129 0.871 50 H 0.095 0.905 51 H 0.110 0.890 52 H 0.106 0.894 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.587 -5.414 22.566 31.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 O -0.371 6.371 4 C -0.196 4.196 5 C 0.291 3.709 6 O -0.447 6.447 7 N -0.367 5.367 8 C 0.030 3.970 9 C -0.072 4.072 10 C -0.138 4.138 11 C -0.150 4.150 12 C -0.175 4.175 13 C 0.048 3.952 14 H 0.072 0.928 15 N -0.340 5.340 16 C -0.356 4.356 17 H 0.071 0.929 18 C -0.237 4.237 19 N -0.610 5.610 20 Si 0.779 3.221 21 H -0.196 1.196 22 H -0.241 1.241 23 H -0.189 1.189 24 C -0.023 4.023 25 C -0.149 4.149 26 C -0.198 4.198 27 C -0.212 4.212 28 C -0.212 4.212 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.230 0.770 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.252 0.748 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.053 0.947 47 H 0.126 0.874 48 H 0.085 0.915 49 H 0.147 0.853 50 H 0.113 0.887 51 H 0.128 0.872 52 H 0.124 0.876 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.219 -4.603 22.514 29.957 hybrid contribution -0.182 -0.702 -1.179 1.384 sum 19.037 -5.305 21.334 29.081 Atomic orbital electron populations 1.22101 0.94515 1.02249 1.02588 1.20294 0.93721 0.81399 0.90801 1.86706 1.27136 1.26351 1.96911 1.22426 1.04687 1.01692 0.90779 1.21194 0.79853 0.84415 0.85434 1.90711 1.38890 1.28193 1.86934 1.45893 1.53788 1.32354 1.04619 1.20944 0.97084 0.95468 0.83471 1.21820 0.97326 0.95122 0.92964 1.22222 0.90878 1.02274 0.98397 1.22252 0.96728 1.00837 0.95232 1.22910 0.95855 1.00562 0.98172 1.22011 0.87315 0.93627 0.92277 0.92841 1.44959 1.22983 1.03833 1.62200 1.18572 1.00596 0.94491 1.21899 0.92921 1.25637 0.96109 1.01750 1.00178 1.69986 1.08429 1.38230 1.44318 0.85878 0.78479 0.80703 0.77032 1.19551 1.24091 1.18895 1.21845 0.97342 0.87145 0.95944 1.22488 1.00349 0.95908 0.96142 1.22992 1.00493 1.04392 0.91955 1.23201 0.99366 0.95415 1.03263 1.22896 1.03989 0.97830 0.96453 0.90177 0.92990 0.92503 0.76994 0.85908 0.85181 0.74795 0.92398 0.95237 0.89759 0.89093 0.90025 0.91243 0.92938 0.93395 0.93029 0.95458 0.94725 0.87430 0.91463 0.85267 0.88664 0.87154 0.87576 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 7.18 71.98 0.52 -3.01 16 2 C 0.18 3.02 0.80 -10.80 -0.01 3.01 16 3 O -0.56 -11.99 11.85 -131.53 -1.56 -13.55 16 4 C -0.16 -2.03 4.95 29.84 0.15 -1.88 16 5 C 0.50 11.60 7.39 87.66 0.65 12.24 16 6 O -0.57 -19.43 12.96 14.41 0.19 -19.25 16 7 N -0.71 -14.44 4.86 -463.05 -2.25 -16.69 16 8 C 0.15 4.41 4.29 86.38 0.37 4.78 16 9 C -0.07 -1.91 0.66 -51.21 -0.03 -1.94 16 10 C -0.10 -1.86 5.68 31.19 0.18 -1.68 16 11 C -0.11 -2.43 6.84 31.61 0.22 -2.22 16 12 C -0.14 -4.37 6.37 31.82 0.20 -4.17 16 13 C 0.15 5.80 3.59 46.05 0.17 5.97 16 14 H 0.05 2.18 7.95 -2.39 -0.02 2.16 16 15 N -0.62 -29.30 2.80 -665.98 -1.87 -31.17 16 16 C -0.23 -13.37 10.64 84.03 0.89 -12.48 16 17 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 18 C -0.04 -2.60 5.43 84.86 0.46 -2.14 16 19 N -0.96 -62.69 13.97 21.65 0.30 -62.38 16 20 Si 0.95 47.58 24.36 68.60 1.67 49.25 16 21 H -0.27 -12.60 6.36 99.48 0.63 -11.96 16 22 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 23 H -0.26 -12.55 6.63 99.48 0.66 -11.89 16 24 C 0.10 4.14 4.23 86.51 0.37 4.51 16 25 C -0.11 -3.08 5.73 31.11 0.18 -2.91 16 26 C -0.18 -2.03 5.32 -10.79 -0.06 -2.09 16 27 C -0.18 -1.96 9.66 30.62 0.30 -1.66 16 28 C -0.17 -2.24 9.86 30.62 0.30 -1.94 16 29 H 0.08 1.46 6.74 -2.38 -0.02 1.45 16 30 H 0.05 1.18 6.96 -2.39 -0.02 1.16 16 31 H 0.06 1.74 5.51 -2.39 -0.01 1.73 16 32 H 0.38 4.84 9.04 -74.06 -0.67 4.17 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.41 5.34 7.86 -92.71 -0.73 4.61 16 36 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.27 7.56 -2.39 -0.02 1.25 16 39 H 0.09 1.30 7.06 -2.39 -0.02 1.28 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 1.85 7.29 -2.39 -0.02 1.83 16 43 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 45 H 0.03 1.11 5.77 -2.39 -0.01 1.10 16 46 H 0.03 1.57 5.91 -2.39 -0.01 1.56 16 47 H 0.11 2.12 7.07 -2.39 -0.02 2.10 16 48 H 0.07 1.86 7.57 -2.39 -0.02 1.85 16 49 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.10 1.22 5.89 -2.39 -0.01 1.20 16 51 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.08 1.33 7.28 -2.38 -0.02 1.31 16 Total: -1.00 -81.85 392.74 0.73 -81.12 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.60 Total: 20.27 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 4.84 Total: -7.61 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -3.81 Total: -110.24 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.37 Total: -32.80 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.67 Total: 49.25 kcal Total: -81.85 0.73 -81.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107372122.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.938 kcal (2) G-P(sol) polarization free energy of solvation -81.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds