Wall clock time and date at job start Tue Mar 31 2020 20:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99962 * 2 1 4 4 C 1.53004 * 109.46545 * 125.00159 * 3 2 1 5 5 O 1.42899 * 109.46531 * 179.97438 * 4 3 2 6 6 C 1.42898 * 113.99758 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47084 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47057 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47057 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47065 * 180.02562 * 9 8 7 11 11 O 1.21285 * 120.00007 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00080 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00325 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.56048 * 33.09150 * 13 12 10 15 15 C 1.54845 * 110.63105 * 155.99942 * 13 12 10 16 16 C 1.55847 * 103.44961 * 118.48581 * 15 13 12 17 17 H 1.08995 * 115.55787 * 158.80995 * 16 15 13 18 18 C 1.55841 * 105.06308 * 288.17929 * 16 15 13 19 19 C 1.54849 * 103.44999 * 71.82224 * 18 16 15 20 20 C 1.55851 * 110.62386 * 270.02633 * 13 12 10 21 21 H 1.08998 * 115.56341 * 82.69733 * 20 13 12 22 22 N 1.50241 * 101.05030 * 208.57009 * 20 13 12 23 23 C 1.36933 * 130.83818 * 233.96933 * 22 20 13 24 24 H 1.07991 * 120.00114 * 359.97070 * 23 22 20 25 25 C 1.38817 * 119.99764 * 179.97438 * 23 22 20 26 26 N 1.31616 * 120.00207 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99751 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47155 * 60.00005 * 27 25 23 29 29 H 1.48499 * 109.46822 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47009 * 299.99664 * 27 25 23 31 31 H 1.07996 * 119.99799 * 359.97438 * 1 2 3 32 32 H 1.07998 * 119.99486 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.00051 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.47010 * 5.00874 * 3 2 1 35 35 H 1.08994 * 109.47345 * 245.00706 * 3 2 1 36 36 H 1.08991 * 109.47249 * 300.00308 * 4 3 2 37 37 H 1.08998 * 109.46882 * 60.00637 * 4 3 2 38 38 H 1.09000 * 109.47827 * 299.99989 * 6 5 4 39 39 H 1.09000 * 109.47064 * 60.00988 * 6 5 4 40 40 H 1.09000 * 109.47297 * 300.00220 * 7 6 5 41 41 H 1.09002 * 109.47187 * 60.00818 * 7 6 5 42 42 H 1.09003 * 109.47647 * 300.00229 * 8 7 6 43 43 H 1.09005 * 109.47031 * 60.00284 * 8 7 6 44 44 H 1.09000 * 109.47297 * 300.00112 * 9 8 7 45 45 H 1.08994 * 109.47380 * 60.00419 * 9 8 7 46 46 H 0.97001 * 119.99554 * 0.02562 * 12 10 9 47 47 H 1.08997 * 110.63052 * 236.97857 * 15 13 12 48 48 H 1.09005 * 110.62345 * 359.83788 * 15 13 12 49 49 H 1.09009 * 110.62362 * 190.31194 * 18 16 15 50 50 H 1.08999 * 110.62714 * 313.32750 * 18 16 15 51 51 H 1.08997 * 110.62735 * 241.51443 * 19 18 16 52 52 H 1.09001 * 110.76462 * 118.55221 * 19 18 16 53 53 H 0.96999 * 119.99947 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 8 3.7500 2.5703 1.1813 6 6 4.6887 2.6994 2.2510 7 6 5.3914 4.0549 2.1520 8 6 6.3969 4.1929 3.2969 9 6 7.0991 5.5487 3.1983 10 6 8.0900 5.6843 4.3257 11 8 8.2219 4.7850 5.1287 12 7 8.8303 6.8046 4.4411 13 6 9.7939 6.9363 5.5366 14 1 10.2232 5.9663 5.7875 15 6 10.9076 7.9461 5.1652 16 6 10.7557 9.0646 6.2398 17 1 11.6364 9.6867 6.3987 18 6 9.4441 9.8157 5.8601 19 6 8.3304 8.8059 6.2315 20 6 9.1208 7.5821 6.7851 21 1 8.5616 6.8988 7.4242 22 7 10.2963 8.2643 7.4255 23 6 10.7953 8.1819 8.6980 24 1 10.3193 7.5399 9.4242 25 6 11.9132 8.9237 9.0545 26 7 12.4937 9.7059 8.1693 27 14 12.5936 8.8119 10.7906 28 1 12.9870 7.4093 11.0787 29 1 13.7816 9.6941 10.9143 30 1 11.5533 9.2430 11.7586 31 1 -0.5399 0.9353 0.0004 32 1 -0.5399 -0.9353 -0.0004 33 1 1.8501 -0.9353 -0.0004 34 1 1.3586 2.1316 0.0897 35 1 2.6212 1.4027 -0.9314 36 1 2.4773 1.2354 2.1130 37 1 3.7400 0.5065 1.0920 38 1 4.1649 2.6309 3.2044 39 1 5.4278 1.9010 2.1841 40 1 5.9152 4.1239 1.1986 41 1 4.6521 4.8531 2.2192 42 1 5.8735 4.1237 4.2506 43 1 7.1361 3.3947 3.2294 44 1 7.6225 5.6183 2.2447 45 1 6.3597 6.3466 3.2661 46 1 8.7250 7.5237 3.7986 47 1 11.8893 7.4777 5.2346 48 1 10.7444 8.3468 4.1647 49 1 9.3430 10.7308 6.4437 50 1 9.4228 10.0355 4.7927 51 1 7.7568 8.5249 5.3483 52 1 7.6749 9.2185 6.9984 53 1 13.2750 10.2240 8.4183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109279494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:02 Heat of formation + Delta-G solvation = -38.512767 kcal Electronic energy + Delta-G solvation = -28442.819164 eV Core-core repulsion = 24508.642918 eV Total energy + Delta-G solvation = -3934.176246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.01715 -38.67979 -38.33448 -35.77494 -34.63740 -33.86695 -32.32291 -30.63092 -29.42728 -29.09725 -28.79867 -27.37352 -24.59644 -23.87325 -23.33673 -21.61134 -21.17958 -20.27988 -20.22614 -19.48278 -18.52858 -17.15441 -16.89388 -16.76768 -16.61444 -15.92569 -15.56168 -15.37146 -14.89529 -14.76459 -14.59186 -14.23943 -13.94555 -13.64643 -13.56897 -13.09636 -12.73401 -12.43809 -12.25826 -12.10646 -11.87565 -11.73626 -11.72017 -11.51896 -11.47321 -11.39539 -11.15756 -11.03212 -10.90802 -10.88357 -10.82012 -10.80862 -10.21540 -10.11291 -9.93953 -9.85421 -9.84164 -9.57657 -9.33734 -9.22456 -8.92381 -8.47316 -6.90808 -5.72190 -3.10140 1.74919 2.91933 3.21647 3.40935 3.44878 3.45840 3.58960 4.44356 4.46673 4.58748 4.64988 4.68528 4.76138 4.81723 4.97443 5.02441 5.06703 5.13098 5.15521 5.21911 5.35724 5.39022 5.47303 5.48734 5.51659 5.55335 5.58093 5.64962 5.71449 5.82378 5.85815 5.98042 6.04490 6.07996 6.12755 6.12959 6.17027 6.24984 6.32385 6.34176 6.54643 6.60924 6.71284 6.82844 6.87356 6.97494 7.00989 7.28561 7.52842 7.76233 7.88702 8.17650 8.55764 9.11015 9.73617 10.54173 11.37418 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.030417 B = 0.001524 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.330503 B =18362.980884 C =18756.912929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C -0.093 4.093 4 C 0.066 3.934 5 O -0.392 6.392 6 C 0.062 3.938 7 C -0.118 4.118 8 C -0.101 4.101 9 C -0.139 4.139 10 C 0.506 3.494 11 O -0.546 6.546 12 N -0.714 5.714 13 C 0.126 3.874 14 H 0.082 0.918 15 C -0.141 4.141 16 C 0.153 3.847 17 H 0.155 0.845 18 C -0.136 4.136 19 C -0.130 4.130 20 C 0.128 3.872 21 H 0.084 0.916 22 N -0.590 5.590 23 C -0.211 4.211 24 H 0.078 0.922 25 C -0.012 4.012 26 N -0.924 5.924 27 Si 0.917 3.083 28 H -0.286 1.286 29 H -0.290 1.290 30 H -0.286 1.286 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.395 0.605 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.054 0.946 50 H 0.045 0.955 51 H 0.051 0.949 52 H 0.050 0.950 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.709 -11.772 -18.074 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.010 4.010 5 O -0.311 6.311 6 C -0.014 4.014 7 C -0.155 4.155 8 C -0.139 4.139 9 C -0.180 4.180 10 C 0.292 3.708 11 O -0.424 6.424 12 N -0.364 5.364 13 C 0.020 3.980 14 H 0.100 0.900 15 C -0.181 4.181 16 C 0.046 3.954 17 H 0.171 0.829 18 C -0.176 4.176 19 C -0.170 4.170 20 C 0.019 3.981 21 H 0.102 0.898 22 N -0.311 5.311 23 C -0.339 4.339 24 H 0.096 0.904 25 C -0.207 4.207 26 N -0.572 5.572 27 Si 0.747 3.253 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.213 1.213 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.229 0.771 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.069 0.931 52 H 0.069 0.931 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.392 -12.192 -17.349 27.425 hybrid contribution 0.261 0.030 0.728 0.774 sum -17.131 -12.162 -16.621 26.789 Atomic orbital electron populations 1.23918 0.95894 1.02106 1.00533 1.22819 0.96046 0.98059 1.00419 1.20659 0.97950 0.95868 0.98586 1.22401 0.93932 0.86481 0.98228 1.87837 1.55303 1.37510 1.50499 1.22528 0.91138 0.98155 0.89586 1.21536 0.98237 0.96166 0.99578 1.21221 0.97780 0.96480 0.98426 1.21648 0.98319 0.99804 0.98195 1.20622 0.81655 0.82214 0.86328 1.90696 1.67743 1.40044 1.43892 1.46280 1.40837 1.18527 1.30801 1.22632 0.89145 0.99616 0.86592 0.89962 1.23300 0.97311 0.98622 0.98879 1.23772 0.96893 0.91471 0.83215 0.82865 1.23034 0.98086 0.98418 0.98016 1.22900 0.97368 0.97639 0.99052 1.23191 0.90059 0.93137 0.91708 0.89809 1.46477 1.28913 1.47884 1.07813 1.19019 1.08000 1.21349 0.85487 0.90385 1.24691 0.98241 0.99541 0.98235 1.69423 1.23371 1.31641 1.32813 0.86106 0.78217 0.77347 0.83582 1.21220 1.21561 1.21260 0.88392 0.88275 0.87174 0.90640 0.90107 0.93242 0.93257 0.93161 0.93191 0.91077 0.91025 0.90933 0.91017 0.89115 0.88997 0.77093 0.91739 0.92775 0.92671 0.93642 0.93091 0.93110 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.97 14.32 29.01 0.42 -0.55 16 2 C -0.16 -0.87 9.52 -36.03 -0.34 -1.21 16 3 C -0.09 -0.60 6.03 -27.88 -0.17 -0.77 16 4 C 0.07 0.49 5.92 37.16 0.22 0.71 16 5 O -0.39 -3.75 10.34 -35.23 -0.36 -4.11 16 6 C 0.06 0.53 5.94 37.16 0.22 0.75 16 7 C -0.12 -0.97 5.58 -26.73 -0.15 -1.12 16 8 C -0.10 -0.99 4.50 -26.73 -0.12 -1.11 16 9 C -0.14 -1.35 5.70 -27.88 -0.16 -1.51 16 10 C 0.51 7.34 7.83 -10.98 -0.09 7.26 16 11 O -0.55 -10.31 15.64 5.55 0.09 -10.23 16 12 N -0.71 -10.27 3.70 -51.40 -0.19 -10.46 16 13 C 0.13 2.36 3.14 -65.44 -0.21 2.15 16 14 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 15 C -0.14 -2.68 6.20 -24.24 -0.15 -2.83 16 16 C 0.15 3.44 4.72 -62.80 -0.30 3.14 16 17 H 0.15 3.94 5.52 -51.93 -0.29 3.65 16 18 C -0.14 -2.60 6.44 -24.24 -0.16 -2.76 16 19 C -0.13 -2.38 6.32 -24.23 -0.15 -2.53 16 20 C 0.13 2.69 5.35 -62.79 -0.34 2.36 16 21 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 22 N -0.59 -14.76 2.99 -145.81 -0.44 -15.20 16 23 C -0.21 -5.84 10.59 -15.06 -0.16 -5.99 16 24 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 26 N -0.92 -26.21 10.47 55.49 0.58 -25.63 16 27 Si 0.92 22.07 29.55 -169.99 -5.02 17.05 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 31 H 0.10 0.47 7.84 -52.49 -0.41 0.06 16 32 H 0.10 0.41 8.06 -52.49 -0.42 -0.02 16 33 H 0.11 0.52 8.06 -52.49 -0.42 0.09 16 34 H 0.07 0.50 7.79 -51.93 -0.40 0.09 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 43 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.39 4.58 7.92 -40.82 -0.32 4.26 16 47 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 48 H 0.05 0.85 7.39 -51.93 -0.38 0.47 16 49 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 50 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 51 H 0.05 0.78 6.39 -51.93 -0.33 0.45 16 52 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 53 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 420.16 15.07 6.33 6.33 Total: -1.00 -31.52 420.16 -10.41 -41.92 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -9.67 Total: 4.75 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.72 Total: -4.43 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.04 Total: -51.29 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.28 Total: -14.34 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -31.52 -10.41 -41.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109279494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.410 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds