Wall clock time and date at job start Tue Mar 31 2020 20:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99962 * 2 1 4 4 C 1.53004 * 109.46545 * 125.00159 * 3 2 1 5 5 O 1.42899 * 109.46531 * 179.97438 * 4 3 2 6 6 C 1.42898 * 113.99758 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47084 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47057 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47057 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47065 * 180.02562 * 9 8 7 11 11 O 1.21285 * 120.00007 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00080 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00325 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.56048 * 33.09150 * 13 12 10 15 15 C 1.54845 * 110.63105 * 155.99942 * 13 12 10 16 16 C 1.55847 * 103.44961 * 118.48581 * 15 13 12 17 17 H 1.08995 * 115.55787 * 158.80995 * 16 15 13 18 18 C 1.55841 * 105.06308 * 288.17929 * 16 15 13 19 19 C 1.54849 * 103.44999 * 71.82224 * 18 16 15 20 20 C 1.55851 * 110.62386 * 270.02633 * 13 12 10 21 21 H 1.08998 * 115.56341 * 82.69733 * 20 13 12 22 22 N 1.50241 * 101.05030 * 208.57009 * 20 13 12 23 23 C 1.36933 * 130.83818 * 233.96933 * 22 20 13 24 24 H 1.07991 * 120.00114 * 359.97070 * 23 22 20 25 25 C 1.38817 * 119.99764 * 179.97438 * 23 22 20 26 26 N 1.31616 * 120.00207 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99751 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47155 * 60.00005 * 27 25 23 29 29 H 1.48499 * 109.46822 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47009 * 299.99664 * 27 25 23 31 31 H 1.07996 * 119.99799 * 359.97438 * 1 2 3 32 32 H 1.07998 * 119.99486 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.00051 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.47010 * 5.00874 * 3 2 1 35 35 H 1.08994 * 109.47345 * 245.00706 * 3 2 1 36 36 H 1.08991 * 109.47249 * 300.00308 * 4 3 2 37 37 H 1.08998 * 109.46882 * 60.00637 * 4 3 2 38 38 H 1.09000 * 109.47827 * 299.99989 * 6 5 4 39 39 H 1.09000 * 109.47064 * 60.00988 * 6 5 4 40 40 H 1.09000 * 109.47297 * 300.00220 * 7 6 5 41 41 H 1.09002 * 109.47187 * 60.00818 * 7 6 5 42 42 H 1.09003 * 109.47647 * 300.00229 * 8 7 6 43 43 H 1.09005 * 109.47031 * 60.00284 * 8 7 6 44 44 H 1.09000 * 109.47297 * 300.00112 * 9 8 7 45 45 H 1.08994 * 109.47380 * 60.00419 * 9 8 7 46 46 H 0.97001 * 119.99554 * 0.02562 * 12 10 9 47 47 H 1.08997 * 110.63052 * 236.97857 * 15 13 12 48 48 H 1.09005 * 110.62345 * 359.83788 * 15 13 12 49 49 H 1.09009 * 110.62362 * 190.31194 * 18 16 15 50 50 H 1.08999 * 110.62714 * 313.32750 * 18 16 15 51 51 H 1.08997 * 110.62735 * 241.51443 * 19 18 16 52 52 H 1.09001 * 110.76462 * 118.55221 * 19 18 16 53 53 H 0.96999 * 119.99947 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 8 3.7500 2.5703 1.1813 6 6 4.6887 2.6994 2.2510 7 6 5.3914 4.0549 2.1520 8 6 6.3969 4.1929 3.2969 9 6 7.0991 5.5487 3.1983 10 6 8.0900 5.6843 4.3257 11 8 8.2219 4.7850 5.1287 12 7 8.8303 6.8046 4.4411 13 6 9.7939 6.9363 5.5366 14 1 10.2232 5.9663 5.7875 15 6 10.9076 7.9461 5.1652 16 6 10.7557 9.0646 6.2398 17 1 11.6364 9.6867 6.3987 18 6 9.4441 9.8157 5.8601 19 6 8.3304 8.8059 6.2315 20 6 9.1208 7.5821 6.7851 21 1 8.5616 6.8988 7.4242 22 7 10.2963 8.2643 7.4255 23 6 10.7953 8.1819 8.6980 24 1 10.3193 7.5399 9.4242 25 6 11.9132 8.9237 9.0545 26 7 12.4937 9.7059 8.1693 27 14 12.5936 8.8119 10.7906 28 1 12.9870 7.4093 11.0787 29 1 13.7816 9.6941 10.9143 30 1 11.5533 9.2430 11.7586 31 1 -0.5399 0.9353 0.0004 32 1 -0.5399 -0.9353 -0.0004 33 1 1.8501 -0.9353 -0.0004 34 1 1.3586 2.1316 0.0897 35 1 2.6212 1.4027 -0.9314 36 1 2.4773 1.2354 2.1130 37 1 3.7400 0.5065 1.0920 38 1 4.1649 2.6309 3.2044 39 1 5.4278 1.9010 2.1841 40 1 5.9152 4.1239 1.1986 41 1 4.6521 4.8531 2.2192 42 1 5.8735 4.1237 4.2506 43 1 7.1361 3.3947 3.2294 44 1 7.6225 5.6183 2.2447 45 1 6.3597 6.3466 3.2661 46 1 8.7250 7.5237 3.7986 47 1 11.8893 7.4777 5.2346 48 1 10.7444 8.3468 4.1647 49 1 9.3430 10.7308 6.4437 50 1 9.4228 10.0355 4.7927 51 1 7.7568 8.5249 5.3483 52 1 7.6749 9.2185 6.9984 53 1 13.2750 10.2240 8.4183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109279494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:01 Heat of formation + Delta-G solvation = -56.220435 kcal Electronic energy + Delta-G solvation = -28443.587027 eV Core-core repulsion = 24508.642918 eV Total energy + Delta-G solvation = -3934.944108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.44661 -39.87802 -39.17709 -36.34168 -35.45996 -35.26157 -34.18236 -31.42189 -30.99808 -30.63980 -29.77863 -28.78506 -26.22411 -25.00563 -23.89449 -22.85780 -22.22776 -21.58477 -21.03246 -20.66892 -20.11874 -18.92678 -17.92842 -17.50399 -17.38884 -16.84191 -16.72273 -16.71623 -16.27517 -15.98806 -15.73799 -15.46119 -15.05722 -14.77442 -14.34841 -14.07865 -13.98309 -13.69839 -13.47529 -13.35068 -13.17580 -12.92349 -12.79246 -12.77296 -12.60408 -12.57267 -12.38907 -12.32467 -12.03229 -12.01793 -11.98164 -11.90013 -11.79567 -11.56311 -11.51357 -11.17128 -11.03676 -10.76300 -10.71123 -10.56218 -10.26811 -9.93093 -8.85506 -7.80026 -5.19300 1.34330 1.45360 1.47754 1.53849 1.78155 2.26271 2.50486 2.74049 3.33258 3.52711 3.83760 3.92540 3.98361 4.01248 4.05419 4.13316 4.15502 4.16907 4.27917 4.37575 4.40746 4.41789 4.45301 4.48742 4.51099 4.51624 4.62400 4.71851 4.81522 4.82994 4.85679 4.86756 4.92321 4.99499 5.00088 5.06106 5.08630 5.12200 5.16132 5.27864 5.33699 5.34422 5.44534 5.47463 5.57417 5.73009 5.78956 5.84538 5.90189 6.25658 6.28015 6.73756 7.05334 7.43669 7.68916 8.55138 9.26599 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.030417 B = 0.001524 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.330503 B =18362.980884 C =18756.912929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.164 4.164 3 C -0.090 4.090 4 C 0.062 3.938 5 O -0.407 6.407 6 C 0.058 3.942 7 C -0.107 4.107 8 C -0.098 4.098 9 C -0.128 4.128 10 C 0.502 3.498 11 O -0.596 6.596 12 N -0.701 5.701 13 C 0.145 3.855 14 H 0.048 0.952 15 C -0.126 4.126 16 C 0.136 3.864 17 H 0.120 0.880 18 C -0.124 4.124 19 C -0.115 4.115 20 C 0.117 3.883 21 H 0.063 0.937 22 N -0.620 5.620 23 C -0.228 4.228 24 H 0.069 0.931 25 C -0.062 4.062 26 N -0.944 5.944 27 Si 0.975 3.025 28 H -0.284 1.284 29 H -0.289 1.289 30 H -0.282 1.282 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.415 0.585 47 H 0.042 0.958 48 H 0.098 0.902 49 H 0.034 0.966 50 H 0.090 0.910 51 H 0.091 0.909 52 H 0.040 0.960 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.426 -11.548 -20.591 30.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.182 4.182 3 C -0.127 4.127 4 C -0.014 4.014 5 O -0.327 6.327 6 C -0.018 4.018 7 C -0.145 4.145 8 C -0.136 4.136 9 C -0.167 4.167 10 C 0.291 3.709 11 O -0.476 6.476 12 N -0.353 5.353 13 C 0.037 3.963 14 H 0.066 0.934 15 C -0.166 4.166 16 C 0.030 3.970 17 H 0.137 0.863 18 C -0.163 4.163 19 C -0.154 4.154 20 C 0.009 3.991 21 H 0.081 0.919 22 N -0.342 5.342 23 C -0.357 4.357 24 H 0.087 0.913 25 C -0.255 4.255 26 N -0.593 5.593 27 Si 0.804 3.196 28 H -0.211 1.211 29 H -0.215 1.215 30 H -0.208 1.208 31 H 0.118 0.882 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.253 0.747 47 H 0.061 0.939 48 H 0.116 0.884 49 H 0.053 0.947 50 H 0.108 0.892 51 H 0.109 0.891 52 H 0.059 0.941 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.148 -11.956 -19.923 30.108 hybrid contribution 0.746 -0.118 1.508 1.687 sum -18.402 -12.074 -18.415 28.697 Atomic orbital electron populations 1.24083 0.95893 1.02771 0.99739 1.22871 0.96273 0.97981 1.01116 1.20630 0.97699 0.96275 0.98135 1.22527 0.94153 0.86014 0.98718 1.87806 1.55605 1.38536 1.50793 1.22582 0.91179 0.98622 0.89441 1.21425 0.97873 0.96093 0.99090 1.21153 0.97683 0.96402 0.98340 1.21684 0.97607 1.00391 0.97037 1.21553 0.81562 0.81052 0.86718 1.90692 1.69165 1.41737 1.46054 1.46035 1.39859 1.19536 1.29879 1.22030 0.89580 0.97501 0.87152 0.93361 1.23124 0.96282 0.97186 0.99960 1.23712 0.97427 0.92399 0.83488 0.86266 1.22926 0.95995 0.97069 1.00325 1.22807 0.96843 0.95587 1.00196 1.23339 0.89534 0.94045 0.92158 0.91886 1.46748 1.30430 1.49270 1.07762 1.19262 1.08297 1.21053 0.87052 0.91269 1.25402 0.98732 0.99774 1.01576 1.69658 1.23438 1.32215 1.33979 0.85196 0.77444 0.77111 0.79836 1.21062 1.21494 1.20786 0.88249 0.87183 0.86365 0.91029 0.90217 0.93130 0.92603 0.93262 0.93042 0.90172 0.90313 0.92596 0.92450 0.86018 0.86117 0.74655 0.93950 0.88405 0.94719 0.89209 0.89056 0.94071 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 14.32 67.78 0.97 -0.72 16 2 C -0.16 -1.64 9.52 25.64 0.24 -1.39 16 3 C -0.09 -1.07 6.03 29.85 0.18 -0.89 16 4 C 0.06 0.85 5.92 71.98 0.43 1.28 16 5 O -0.41 -7.21 10.34 -148.98 -1.54 -8.75 16 6 C 0.06 0.91 5.94 71.98 0.43 1.34 16 7 C -0.11 -1.49 5.58 30.60 0.17 -1.32 16 8 C -0.10 -1.71 4.50 30.60 0.14 -1.57 16 9 C -0.13 -1.97 5.70 29.85 0.17 -1.80 16 10 C 0.50 13.40 7.83 87.66 0.69 14.09 16 11 O -0.60 -22.40 15.64 -3.04 -0.05 -22.44 16 12 N -0.70 -17.97 3.70 -434.91 -1.61 -19.58 16 13 C 0.14 5.31 3.14 46.61 0.15 5.45 16 14 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16 15 C -0.13 -4.61 6.20 32.21 0.20 -4.41 16 16 C 0.14 6.08 4.72 46.23 0.22 6.30 16 17 H 0.12 6.27 5.52 -2.39 -0.01 6.26 16 18 C -0.12 -4.46 6.44 32.21 0.21 -4.25 16 19 C -0.12 -3.94 6.32 32.21 0.20 -3.74 16 20 C 0.12 4.94 5.35 46.23 0.25 5.19 16 21 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 22 N -0.62 -31.78 2.99 -615.22 -1.84 -33.61 16 23 C -0.23 -13.07 10.59 84.04 0.89 -12.18 16 24 H 0.07 3.94 7.83 -2.92 -0.02 3.92 16 25 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 26 N -0.94 -55.09 10.47 21.65 0.23 -54.86 16 27 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 28 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 29 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 30 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 31 H 0.10 0.84 7.84 -2.91 -0.02 0.81 16 32 H 0.11 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.12 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.07 0.88 7.79 -2.39 -0.02 0.86 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.16 8.10 -2.39 -0.02 1.15 16 43 H 0.06 1.17 8.10 -2.38 -0.02 1.15 16 44 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.42 7.39 7.92 -92.71 -0.73 6.66 16 47 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.10 2.69 7.39 -2.38 -0.02 2.67 16 49 H 0.03 1.37 8.14 -2.38 -0.02 1.36 16 50 H 0.09 2.43 7.82 -2.39 -0.02 2.42 16 51 H 0.09 2.38 6.39 -2.39 -0.02 2.37 16 52 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 53 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -72.76 420.16 3.34 -69.42 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.13 Total: 22.96 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 5.99 Total: -1.67 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -3.22 Total: -108.05 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -1.59 Total: -31.20 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -72.76 3.34 -69.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109279494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.195 kcal (2) G-P(sol) polarization free energy of solvation -72.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds