Wall clock time and date at job start Tue Mar 31 2020 21:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99775 * 2 1 4 4 C 1.53001 * 109.46904 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47147 * 184.45497 * 4 3 2 6 6 N 1.46504 * 109.45792 * 303.54147 * 5 4 3 7 7 C 1.34781 * 119.99615 * 299.93786 * 6 5 4 8 8 O 1.21610 * 120.00274 * 4.99815 * 7 6 5 9 9 C 1.47104 * 119.99651 * 184.72874 * 7 6 5 10 10 C 1.32994 * 120.00181 * 173.53613 * 9 7 6 11 11 C 1.50696 * 120.00027 * 352.13024 * 10 9 7 12 12 C 1.50701 * 119.99659 * 172.12426 * 10 9 7 13 13 C 1.53002 * 117.49339 * 188.74574 * 12 10 9 14 14 C 1.53003 * 117.49397 * 120.09321 * 12 10 9 15 15 C 1.53032 * 109.45298 * 63.50789 * 5 4 3 16 16 C 1.53191 * 109.31497 * 181.37930 * 15 5 4 17 17 N 1.46920 * 108.77483 * 305.36797 * 16 15 5 18 18 C 1.36948 * 120.62959 * 233.62611 * 17 16 15 19 19 H 1.07997 * 119.99364 * 33.19222 * 18 17 16 20 20 C 1.38805 * 119.99827 * 213.19249 * 18 17 16 21 21 N 1.31619 * 120.00557 * 7.95718 * 20 18 17 22 22 Si 1.86811 * 119.99658 * 187.95825 * 20 18 17 23 23 H 1.48493 * 109.47108 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47015 * 119.99997 * 22 20 18 25 25 H 1.48499 * 109.46750 * 240.00130 * 22 20 18 26 26 C 1.46926 * 118.74199 * 53.60585 * 17 16 15 27 27 C 1.53039 * 109.45839 * 183.57243 * 5 4 3 28 28 H 1.08994 * 109.47280 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46809 * 300.00211 * 1 2 3 30 30 H 1.09000 * 109.47313 * 59.99978 * 1 2 3 31 31 H 1.08998 * 109.47372 * 60.00365 * 3 2 1 32 32 H 1.09005 * 109.47209 * 299.99634 * 3 2 1 33 33 H 1.08991 * 109.47506 * 64.44816 * 4 3 2 34 34 H 1.09003 * 109.47050 * 304.44473 * 4 3 2 35 35 H 0.96996 * 119.99952 * 119.93060 * 6 5 4 36 36 H 1.08008 * 119.99889 * 353.53479 * 9 7 6 37 37 H 1.08997 * 109.47529 * 87.64192 * 11 10 9 38 38 H 1.08996 * 109.47353 * 207.64642 * 11 10 9 39 39 H 1.09011 * 109.46776 * 327.64353 * 11 10 9 40 40 H 1.08999 * 115.55649 * 334.42089 * 12 10 9 41 41 H 1.09001 * 117.49967 * 0.02562 * 13 12 10 42 42 H 1.09000 * 117.49340 * 145.02381 * 13 12 10 43 43 H 1.09002 * 117.49494 * 214.97664 * 14 12 10 44 44 H 1.08998 * 117.49987 * 359.96708 * 14 12 10 45 45 H 1.09000 * 109.50148 * 301.33267 * 15 5 4 46 46 H 1.09003 * 109.49687 * 61.42727 * 15 5 4 47 47 H 1.08999 * 109.58693 * 185.57778 * 16 15 5 48 48 H 1.08998 * 109.58635 * 65.15386 * 16 15 5 49 49 H 0.96997 * 120.00031 * 180.02562 * 21 20 18 50 50 H 1.09005 * 109.58541 * 186.60333 * 26 17 16 51 51 H 1.08997 * 109.58558 * 66.17895 * 26 17 16 52 52 H 1.08999 * 109.49676 * 298.57374 * 27 5 4 53 53 H 1.09002 * 109.50176 * 58.67271 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1574 2.5781 0.1114 6 7 3.6651 3.4216 -0.9806 7 6 3.8918 3.0667 -2.2609 8 8 4.4243 2.0025 -2.5118 9 6 3.4897 3.9640 -3.3551 10 6 3.8268 3.6763 -4.6090 11 6 4.7669 2.5333 -4.8932 12 6 3.2685 4.4932 -5.7456 13 6 3.5257 3.9925 -7.1683 14 6 4.2658 5.2261 -6.6453 15 6 3.7692 3.2031 1.4532 16 6 4.3649 4.6113 1.5475 17 7 5.8135 4.5283 1.3171 18 6 6.6953 5.0589 2.2207 19 1 6.4583 5.0518 3.2744 20 6 7.8934 5.6057 1.7823 21 7 8.1152 5.7576 0.4939 22 14 9.1912 6.1262 3.0212 23 1 8.7009 5.8529 4.3960 24 1 10.4410 5.3613 2.7796 25 1 9.4630 7.5785 2.8726 26 6 6.2984 3.8648 0.0991 27 6 5.6810 2.4650 0.0212 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8623 0.7143 -0.9279 34 1 3.8521 0.5764 0.8466 35 1 3.1760 4.2353 -0.7822 36 1 2.9206 4.8564 -3.1401 37 1 4.1971 1.6091 -4.9882 38 1 5.3034 2.7265 -5.8221 39 1 5.4805 2.4377 -4.0746 40 1 2.3144 4.9823 -5.5489 41 1 4.0983 3.0720 -7.2821 42 1 2.7409 4.1525 -7.9077 43 1 3.9676 6.1971 -7.0407 44 1 5.3256 5.1177 -6.4147 45 1 2.6832 3.2619 1.5266 46 1 4.1565 2.5891 2.2663 47 1 4.1755 5.0226 2.5390 48 1 3.9108 5.2516 0.7913 49 1 8.9526 6.1394 0.1876 50 1 7.3848 3.7836 0.1351 51 1 6.0019 4.4442 -0.7752 52 1 6.0503 1.8579 0.8477 53 1 5.9558 1.9984 -0.9248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150977306.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:29 Heat of formation + Delta-G solvation = -36.520193 kcal Electronic energy + Delta-G solvation = -31146.346248 eV Core-core repulsion = 27212.256406 eV Total energy + Delta-G solvation = -3934.089841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.64171 -39.59375 -38.66465 -38.40011 -36.22402 -34.06146 -33.63326 -32.85437 -31.77163 -30.40977 -28.63495 -27.63338 -26.41799 -25.16181 -24.59267 -23.65556 -23.21067 -22.20103 -21.67529 -20.13100 -19.48059 -18.68215 -17.86501 -17.46687 -17.03755 -16.91510 -16.80776 -16.16163 -15.98442 -15.72657 -15.48222 -15.33412 -15.15305 -14.86691 -14.67028 -14.29568 -14.14227 -14.01438 -13.71140 -13.62915 -13.14908 -13.02062 -12.82281 -12.76416 -12.71459 -12.62152 -12.43731 -12.23425 -12.22834 -12.13032 -12.05891 -11.92151 -11.82455 -11.79238 -11.33535 -11.25550 -11.19983 -10.57826 -10.54990 -10.19007 -9.98065 -9.63002 -8.56273 -7.84570 -5.38072 0.42970 1.45295 1.47132 1.57059 2.30417 2.47709 2.51398 2.83110 3.03568 3.31772 3.59035 3.72889 3.80514 3.91548 3.97950 4.00009 4.13183 4.13881 4.19863 4.24198 4.35009 4.40409 4.46567 4.53971 4.54935 4.60361 4.68979 4.71244 4.76876 4.77879 4.83261 4.83649 4.92672 4.99772 5.02186 5.06774 5.11566 5.14460 5.16505 5.20348 5.26121 5.33644 5.37130 5.51784 5.58121 5.62333 5.65704 5.74063 5.82846 6.26669 6.43815 6.79662 7.18217 7.46750 7.88063 8.41421 9.20276 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008016 B = 0.004239 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.272167 B = 6603.504264 C = 9415.085095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.076 3.924 4 C -0.120 4.120 5 C 0.204 3.796 6 N -0.706 5.706 7 C 0.542 3.458 8 O -0.565 6.565 9 C -0.240 4.240 10 C -0.001 4.001 11 C -0.120 4.120 12 C -0.142 4.142 13 C -0.162 4.162 14 C -0.168 4.168 15 C -0.127 4.127 16 C 0.143 3.857 17 N -0.607 5.607 18 C -0.261 4.261 19 H 0.067 0.933 20 C -0.047 4.047 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.264 1.264 24 H -0.295 1.295 25 H -0.291 1.291 26 C 0.198 3.802 27 C -0.137 4.137 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.406 0.594 36 H 0.144 0.856 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.130 0.870 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.024 0.976 49 H 0.247 0.753 50 H 0.040 0.960 51 H -0.004 1.004 52 H 0.052 0.948 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.994 -4.491 -9.846 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C 0.000 4.000 4 C -0.158 4.158 5 C 0.118 3.882 6 N -0.357 5.357 7 C 0.333 3.667 8 O -0.447 6.447 9 C -0.260 4.260 10 C -0.003 4.003 11 C -0.176 4.176 12 C -0.160 4.160 13 C -0.198 4.198 14 C -0.205 4.205 15 C -0.166 4.166 16 C 0.017 3.983 17 N -0.331 5.331 18 C -0.392 4.392 19 H 0.084 0.916 20 C -0.243 4.243 21 N -0.581 5.581 22 Si 0.794 3.206 23 H -0.188 1.188 24 H -0.222 1.222 25 H -0.218 1.218 26 C 0.072 3.928 27 C -0.177 4.177 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.242 0.758 36 H 0.161 0.839 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.148 0.852 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.042 0.958 49 H 0.056 0.944 50 H 0.059 0.941 51 H 0.014 0.986 52 H 0.071 0.929 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.374 -5.316 -10.033 19.925 hybrid contribution 0.927 1.017 0.679 1.534 sum -15.446 -4.299 -9.355 18.563 Atomic orbital electron populations 1.22911 0.79582 1.03733 1.00762 1.87836 1.21508 1.28998 1.95572 1.22444 0.93000 0.84106 1.00441 1.21815 0.94163 0.96582 1.03262 1.19938 0.92311 0.89193 0.86755 1.45908 1.57597 1.27239 1.04930 1.18804 0.77981 0.86339 0.83540 1.90666 1.44514 1.25300 1.84193 1.22414 1.09255 1.02006 0.92363 1.21952 0.91449 0.93614 0.93315 1.21064 0.98399 0.96292 1.01883 1.21331 1.01282 1.03600 0.89824 1.23159 1.03629 0.98448 0.94594 1.23066 0.97449 0.97775 1.02195 1.22282 1.01316 0.97940 0.95077 1.21057 0.83817 0.94318 0.99067 1.44212 1.01063 1.65076 1.22738 1.19539 0.99439 1.31093 0.89113 0.91554 1.25941 1.02065 0.98992 0.97292 1.70152 1.24894 1.48881 1.14158 0.85234 0.78942 0.77121 0.79330 1.18831 1.22161 1.21783 1.20285 0.96932 0.88564 0.87019 1.22350 0.95673 0.99065 1.00605 0.88530 0.92817 0.93691 0.91661 0.93759 0.91317 0.91157 0.75827 0.83872 0.90785 0.91221 0.91835 0.85237 0.88340 0.86349 0.86610 0.89537 0.88657 0.91009 0.92200 0.95776 0.94364 0.94130 0.98627 0.92888 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.42 -11.45 10.70 -148.98 -1.59 -13.05 16 3 C 0.08 1.99 5.50 71.98 0.40 2.38 16 4 C -0.12 -3.74 4.35 30.60 0.13 -3.61 16 5 C 0.20 6.73 0.35 3.63 0.00 6.73 16 6 N -0.71 -21.53 3.27 -426.35 -1.39 -22.93 16 7 C 0.54 17.73 6.90 86.57 0.60 18.33 16 8 O -0.56 -21.40 9.59 -4.06 -0.04 -21.44 16 9 C -0.24 -6.48 9.67 23.43 0.23 -6.25 16 10 C 0.00 -0.03 5.81 -17.62 -0.10 -0.14 16 11 C -0.12 -3.27 7.87 71.23 0.56 -2.71 16 12 C -0.14 -2.61 6.01 -11.54 -0.07 -2.68 16 13 C -0.16 -2.39 9.77 30.62 0.30 -2.09 16 14 C -0.17 -2.79 10.09 30.62 0.31 -2.48 16 15 C -0.13 -3.87 4.72 30.67 0.14 -3.73 16 16 C 0.14 5.41 6.24 86.36 0.54 5.95 16 17 N -0.61 -29.90 2.98 -699.11 -2.08 -31.99 16 18 C -0.26 -14.26 9.57 84.03 0.80 -13.46 16 19 H 0.07 3.51 7.84 -2.91 -0.02 3.49 16 20 C -0.05 -2.66 5.10 84.86 0.43 -2.23 16 21 N -0.93 -56.07 11.04 21.65 0.24 -55.83 16 22 Si 0.97 45.20 29.56 68.60 2.03 47.22 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 26 C 0.20 9.91 4.98 86.36 0.43 10.34 16 27 C -0.14 -5.72 4.67 30.67 0.14 -5.58 16 28 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 1.46 6.28 -2.39 -0.02 1.44 16 32 H 0.04 1.15 7.57 -2.38 -0.02 1.14 16 33 H 0.07 2.52 6.12 -2.39 -0.01 2.50 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.41 10.77 7.25 -92.71 -0.67 10.10 16 36 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 37 H 0.07 2.02 8.11 -2.39 -0.02 2.00 16 38 H 0.07 1.58 6.47 -2.39 -0.02 1.57 16 39 H 0.06 2.19 5.97 -2.38 -0.01 2.17 16 40 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.10 1.52 6.50 -2.39 -0.02 1.50 16 42 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 45 H 0.10 2.21 6.36 -2.39 -0.02 2.20 16 46 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.06 2.21 7.93 -2.39 -0.02 2.19 16 48 H 0.02 0.88 6.94 -2.39 -0.02 0.87 16 49 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 50 H 0.04 2.37 6.16 -2.38 -0.01 2.36 16 51 H 0.00 -0.23 7.74 -2.39 -0.02 -0.25 16 52 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 53 H 0.06 2.49 6.37 -2.39 -0.02 2.47 16 Total: -1.00 -69.49 402.47 3.47 -66.01 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.23 Total: 31.49 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 6.09 Total: 0.51 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -3.24 Total: -110.74 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.63 Total: -34.49 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.49 3.47 -66.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150977306.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.492 kcal (2) G-P(sol) polarization free energy of solvation -69.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds