Wall clock time and date at job start Tue Mar 31 2020 21:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99577 * 2 1 4 4 C 1.53008 * 109.46639 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46508 * 183.43439 * 4 3 2 6 6 N 1.46498 * 109.46034 * 294.86594 * 5 4 3 7 7 C 1.34775 * 120.00168 * 296.93085 * 6 5 4 8 8 O 1.21616 * 119.99983 * 4.17043 * 7 6 5 9 9 C 1.47106 * 119.99824 * 184.18008 * 7 6 5 10 10 C 1.32998 * 119.99727 * 176.87188 * 9 7 6 11 11 C 1.50694 * 119.99952 * 172.29410 * 10 9 7 12 12 C 1.50705 * 119.99870 * 352.29597 * 10 9 7 13 13 C 1.53001 * 117.49474 * 179.89853 * 12 10 9 14 14 C 1.52997 * 117.49917 * 111.27773 * 12 10 9 15 15 C 1.53032 * 109.45505 * 54.83773 * 5 4 3 16 16 C 1.53194 * 109.31847 * 181.37710 * 15 5 4 17 17 N 1.46924 * 108.77388 * 305.36197 * 16 15 5 18 18 C 1.36937 * 120.63295 * 233.58347 * 17 16 15 19 19 H 1.08002 * 119.99835 * 32.87365 * 18 17 16 20 20 C 1.38809 * 119.99920 * 212.87081 * 18 17 16 21 21 N 1.31614 * 120.00002 * 8.52810 * 20 18 17 22 22 Si 1.86801 * 119.99655 * 188.52751 * 20 18 17 23 23 H 1.48499 * 109.47394 * 60.00327 * 22 20 18 24 24 H 1.48504 * 109.46966 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47135 * 300.00019 * 22 20 18 26 26 C 1.46935 * 118.73654 * 53.60682 * 17 16 15 27 27 C 1.53045 * 109.45873 * 174.89533 * 5 4 3 28 28 H 1.08996 * 109.46632 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46927 * 300.00080 * 1 2 3 30 30 H 1.09001 * 109.47101 * 59.99865 * 1 2 3 31 31 H 1.08993 * 109.47432 * 60.00017 * 3 2 1 32 32 H 1.08999 * 109.47355 * 299.99465 * 3 2 1 33 33 H 1.08996 * 109.47205 * 63.43424 * 4 3 2 34 34 H 1.08998 * 109.46624 * 303.42808 * 4 3 2 35 35 H 0.96997 * 119.99921 * 116.93160 * 6 5 4 36 36 H 1.07999 * 120.00060 * 356.59318 * 9 7 6 37 37 H 1.09000 * 109.47344 * 89.99896 * 11 10 9 38 38 H 1.09001 * 109.47345 * 210.00127 * 11 10 9 39 39 H 1.09001 * 109.47337 * 329.99936 * 11 10 9 40 40 H 1.08998 * 115.54863 * 325.59932 * 12 10 9 41 41 H 1.08994 * 117.50235 * 359.97438 * 13 12 10 42 42 H 1.09000 * 117.49791 * 145.02205 * 13 12 10 43 43 H 1.09008 * 117.49746 * 214.97672 * 14 12 10 44 44 H 1.09001 * 117.49747 * 359.96817 * 14 12 10 45 45 H 1.09005 * 109.49756 * 301.32473 * 15 5 4 46 46 H 1.08997 * 109.50383 * 61.42386 * 15 5 4 47 47 H 1.09001 * 109.59020 * 185.57398 * 16 15 5 48 48 H 1.09004 * 109.58461 * 65.14624 * 16 15 5 49 49 H 0.97001 * 119.99696 * 179.97438 * 21 20 18 50 50 H 1.08996 * 109.58319 * 186.60667 * 26 17 16 51 51 H 1.08995 * 109.58672 * 66.17872 * 26 17 16 52 52 H 1.08998 * 109.49889 * 298.57921 * 27 5 4 53 53 H 1.09008 * 109.49304 * 58.67453 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1575 2.5799 0.0858 6 7 3.8307 3.3359 -1.1258 7 6 4.2752 2.9116 -2.3253 8 8 4.8827 1.8616 -2.4120 9 6 4.0256 3.7187 -3.5296 10 6 4.5176 3.3317 -4.7031 11 6 4.1209 4.0575 -5.9627 12 6 5.4718 2.1673 -4.7731 13 6 6.0008 1.7695 -6.1525 14 6 4.9737 0.8850 -5.4428 15 6 3.6004 3.3114 1.3090 16 6 4.1990 4.7201 1.3732 17 7 5.6641 4.6128 1.3499 18 6 6.4231 5.2105 2.3205 19 1 6.0433 5.2937 3.3281 20 6 7.6805 5.7093 2.0092 21 7 8.0759 5.7611 0.7550 22 14 8.8113 6.3070 3.3707 23 1 9.0906 5.1900 4.3084 24 1 10.0859 6.7883 2.7798 25 1 8.1562 7.4186 4.1060 26 6 6.2996 3.8524 0.2650 27 6 5.6774 2.4535 0.2134 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8610 0.6981 -0.9200 34 1 3.8532 0.5915 0.8568 35 1 3.2943 4.1418 -1.0647 36 1 3.4392 4.6230 -3.4617 37 1 4.8181 4.8751 -6.1459 38 1 4.1442 3.3648 -6.8040 39 1 3.1134 4.4578 -5.8495 40 1 6.1481 2.0622 -3.9248 41 1 5.6584 2.3496 -7.0094 42 1 7.0254 1.4024 -6.2119 43 1 5.3227 -0.0639 -5.0352 44 1 3.9557 0.8834 -5.8323 45 1 2.5155 3.3806 1.2287 46 1 3.8645 2.7625 2.2129 47 1 3.8831 5.2098 2.2944 48 1 3.8614 5.3001 0.5143 49 1 8.9545 6.1101 0.5375 50 1 7.3696 3.7695 0.4551 51 1 6.1333 4.3616 -0.6842 52 1 5.9220 1.9125 1.1275 53 1 6.0708 1.9118 -0.6469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150977311.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:33 Heat of formation + Delta-G solvation = -34.989900 kcal Electronic energy + Delta-G solvation = -31356.232100 eV Core-core repulsion = 27422.208617 eV Total energy + Delta-G solvation = -3934.023483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.60861 -39.63610 -38.64457 -38.13619 -36.15013 -34.32779 -33.56143 -32.84397 -31.78936 -30.35042 -28.81806 -27.60985 -26.37890 -24.75008 -24.57549 -23.58242 -23.17544 -22.28144 -21.83213 -20.10786 -19.57333 -18.66989 -18.00362 -17.46004 -16.95504 -16.83010 -16.67601 -16.11948 -15.90488 -15.77195 -15.42872 -15.36345 -15.14681 -14.77607 -14.38321 -14.33645 -14.01361 -13.88489 -13.82629 -13.78146 -13.19553 -13.07980 -12.99118 -12.74703 -12.70789 -12.60436 -12.44502 -12.27416 -12.20484 -12.10881 -12.07815 -11.92833 -11.80868 -11.60369 -11.34094 -11.22401 -11.11541 -10.55681 -10.53538 -10.14170 -9.91689 -9.60516 -8.56577 -7.84452 -5.37520 0.47561 1.45852 1.48211 1.54419 2.35974 2.50368 2.54920 2.83047 3.10446 3.31608 3.65945 3.72569 3.75429 3.94713 4.01761 4.09060 4.13924 4.18849 4.24280 4.31476 4.38190 4.46855 4.49050 4.54453 4.55288 4.60420 4.68023 4.71508 4.76732 4.77148 4.83429 4.83993 4.92650 4.98477 5.01395 5.06796 5.10530 5.13456 5.19450 5.26790 5.27697 5.36035 5.39835 5.49491 5.52295 5.64955 5.72312 5.75019 5.84524 6.27059 6.43218 6.83729 7.17976 7.52451 7.88225 8.41642 9.20191 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008646 B = 0.004280 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3237.884269 B = 6541.241841 C = 8918.016141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.073 3.927 4 C -0.118 4.118 5 C 0.206 3.794 6 N -0.707 5.707 7 C 0.540 3.460 8 O -0.562 6.562 9 C -0.243 4.243 10 C -0.003 4.003 11 C -0.123 4.123 12 C -0.138 4.138 13 C -0.171 4.171 14 C -0.154 4.154 15 C -0.128 4.128 16 C 0.143 3.857 17 N -0.607 5.607 18 C -0.264 4.264 19 H 0.067 0.933 20 C -0.047 4.047 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.280 1.280 24 H -0.296 1.296 25 H -0.272 1.272 26 C 0.199 3.801 27 C -0.138 4.138 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.405 0.595 36 H 0.147 0.853 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.024 0.976 49 H 0.247 0.753 50 H 0.039 0.961 51 H -0.005 1.005 52 H 0.049 0.951 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.883 -6.107 -11.155 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.003 4.003 4 C -0.157 4.157 5 C 0.119 3.881 6 N -0.358 5.358 7 C 0.331 3.669 8 O -0.444 6.444 9 C -0.263 4.263 10 C -0.005 4.005 11 C -0.179 4.179 12 C -0.156 4.156 13 C -0.208 4.208 14 C -0.191 4.191 15 C -0.168 4.168 16 C 0.018 3.982 17 N -0.331 5.331 18 C -0.395 4.395 19 H 0.084 0.916 20 C -0.243 4.243 21 N -0.581 5.581 22 Si 0.794 3.206 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.197 1.197 26 C 0.074 3.926 27 C -0.178 4.178 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.241 0.759 36 H 0.165 0.835 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.120 0.880 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.042 0.958 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.013 0.987 52 H 0.068 0.932 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.207 -6.923 -11.231 20.132 hybrid contribution 0.912 0.944 0.935 1.611 sum -14.295 -5.979 -10.296 18.604 Atomic orbital electron populations 1.22915 0.79541 1.03717 1.00836 1.87842 1.21541 1.29023 1.95590 1.22528 0.92889 0.84186 1.00720 1.21786 0.94197 0.96654 1.03056 1.19895 0.93382 0.90163 0.84636 1.45892 1.54875 1.29343 1.05663 1.18902 0.78163 0.85579 0.84248 1.90665 1.41971 1.25158 1.86558 1.22530 1.09006 1.02704 0.92107 1.22084 0.90198 0.92635 0.95537 1.21064 1.02865 1.00429 0.93590 1.21305 1.01840 0.95540 0.96920 1.23220 0.99184 1.03267 0.95106 1.22771 0.99669 0.93712 1.02907 1.22312 1.00616 0.97357 0.96467 1.21059 0.83565 0.94417 0.99199 1.44202 1.01293 1.58963 1.28597 1.19475 0.99103 1.30715 0.90171 0.91565 1.25937 1.01262 0.99343 0.97742 1.70147 1.19766 1.50348 1.17816 0.85369 0.77938 0.78446 0.78821 1.20562 1.22280 1.19748 1.20259 0.95822 0.87818 0.88744 1.22358 0.95998 0.99011 1.00411 0.88610 0.92881 0.93470 0.91507 0.93282 0.91505 0.91523 0.75887 0.83516 0.89576 0.89517 0.89460 0.88733 0.86344 0.88680 0.89750 0.88023 0.88493 0.91100 0.92232 0.95769 0.94369 0.94275 0.98717 0.93178 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.42 -11.34 10.70 -148.98 -1.59 -12.94 16 3 C 0.07 1.86 5.41 71.98 0.39 2.25 16 4 C -0.12 -3.72 4.56 30.60 0.14 -3.58 16 5 C 0.21 6.82 0.36 3.63 0.00 6.83 16 6 N -0.71 -21.66 3.58 -426.37 -1.53 -23.18 16 7 C 0.54 17.85 7.00 86.57 0.61 18.45 16 8 O -0.56 -21.66 9.50 -4.08 -0.04 -21.70 16 9 C -0.24 -6.48 9.62 23.43 0.23 -6.25 16 10 C 0.00 -0.06 5.80 -17.62 -0.10 -0.17 16 11 C -0.12 -1.91 9.53 71.23 0.68 -1.23 16 12 C -0.14 -3.82 4.29 -11.54 -0.05 -3.87 16 13 C -0.17 -3.54 9.80 30.59 0.30 -3.24 16 14 C -0.15 -3.61 10.23 30.59 0.31 -3.29 16 15 C -0.13 -3.93 4.50 30.67 0.14 -3.80 16 16 C 0.14 5.45 6.24 86.36 0.54 5.99 16 17 N -0.61 -30.14 2.98 -699.09 -2.08 -32.23 16 18 C -0.26 -14.52 9.57 84.03 0.80 -13.71 16 19 H 0.07 3.51 7.84 -2.91 -0.02 3.49 16 20 C -0.05 -2.67 5.09 84.86 0.43 -2.24 16 21 N -0.94 -56.46 11.04 21.65 0.24 -56.22 16 22 Si 0.97 45.40 29.56 68.60 2.03 47.43 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 C 0.20 10.11 4.98 86.36 0.43 10.54 16 27 C -0.14 -5.85 4.62 30.67 0.14 -5.71 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 1.48 6.11 -2.39 -0.01 1.46 16 32 H 0.05 1.21 7.85 -2.39 -0.02 1.19 16 33 H 0.07 2.45 6.13 -2.39 -0.01 2.43 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.41 10.65 7.35 -92.71 -0.68 9.97 16 36 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.09 6.29 -2.39 -0.02 1.07 16 39 H 0.09 1.08 8.07 -2.39 -0.02 1.06 16 40 H 0.09 3.44 6.31 -2.39 -0.02 3.43 16 41 H 0.12 1.84 6.26 -2.39 -0.01 1.83 16 42 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 44 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.10 2.24 6.19 -2.38 -0.01 2.23 16 46 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.06 2.21 7.93 -2.39 -0.02 2.19 16 48 H 0.02 0.89 7.00 -2.38 -0.02 0.88 16 49 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 50 H 0.04 2.31 6.15 -2.39 -0.01 2.30 16 51 H -0.01 -0.29 7.64 -2.39 -0.02 -0.30 16 52 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 53 H 0.06 2.67 6.13 -2.38 -0.01 2.65 16 Total: -1.00 -71.10 402.36 3.48 -67.63 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.22 Total: 32.52 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 6.23 Total: -1.31 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -3.37 Total: -111.63 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -1.63 Total: -34.63 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.10 3.48 -67.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150977311.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.636 kcal (2) G-P(sol) polarization free energy of solvation -71.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds