Wall clock time and date at job start Tue Mar 31 2020 19:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47456 * 2 1 4 4 C 1.53001 * 109.46905 * 120.00263 * 2 1 3 5 5 H 1.08998 * 110.54367 * 46.50421 * 4 2 1 6 6 C 1.55142 * 110.52248 * 283.72549 * 4 2 1 7 7 C 1.54987 * 102.09422 * 220.39761 * 6 4 2 8 8 O 1.44383 * 103.49212 * 37.10614 * 7 6 4 9 9 C 1.43744 * 106.97474 * 319.93785 * 8 7 6 10 10 H 1.08996 * 109.88304 * 266.93938 * 9 8 7 11 11 C 1.50700 * 109.87881 * 145.93518 * 9 8 7 12 12 O 1.21284 * 119.99560 * 356.74292 * 11 9 8 13 13 N 1.34776 * 120.00054 * 177.01654 * 11 9 8 14 14 C 1.46499 * 119.99665 * 184.82983 * 13 11 9 15 15 C 1.53002 * 109.46536 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46949 * 179.97438 * 15 14 13 17 17 C 1.29462 * 117.69162 * 94.74241 * 16 15 14 18 18 C 1.50313 * 123.65482 * 180.58767 * 17 16 15 19 19 N 1.47011 * 109.20354 * 349.50063 * 18 17 16 20 20 C 1.36931 * 121.37281 * 222.76247 * 19 18 17 21 21 H 1.08002 * 119.99795 * 149.04503 * 20 19 18 22 22 C 1.38811 * 120.00230 * 329.04497 * 20 19 18 23 23 N 1.31625 * 120.00130 * 353.76409 * 22 20 19 24 24 Si 1.86799 * 120.00143 * 173.77202 * 22 20 19 25 25 H 1.48498 * 109.47375 * 59.99735 * 24 22 20 26 26 H 1.48500 * 109.47116 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46675 * 299.99684 * 24 22 20 28 28 C 1.47335 * 117.24799 * 42.73993 * 19 18 17 29 29 C 1.49969 * 117.69984 * 275.00420 * 16 15 14 30 30 H 1.08999 * 109.47388 * 295.46908 * 1 2 3 31 31 H 1.09003 * 109.46896 * 55.46504 * 1 2 3 32 32 H 1.09001 * 109.47248 * 175.46261 * 1 2 3 33 33 H 1.08998 * 109.47210 * 239.99644 * 2 1 3 34 34 H 1.09004 * 109.47470 * 170.98858 * 3 2 1 35 35 H 1.08994 * 109.47431 * 290.99162 * 3 2 1 36 36 H 1.09005 * 109.47157 * 50.99490 * 3 2 1 37 37 H 1.09006 * 110.83156 * 102.22878 * 6 4 2 38 38 H 1.09005 * 111.00629 * 338.64551 * 6 4 2 39 39 H 1.09002 * 110.62203 * 278.60383 * 7 6 4 40 40 H 1.09002 * 110.61905 * 155.61178 * 7 6 4 41 41 H 0.96995 * 119.99414 * 4.83220 * 13 11 9 42 42 H 1.08996 * 109.47130 * 299.99443 * 14 13 11 43 43 H 1.08992 * 109.47396 * 60.00381 * 14 13 11 44 44 H 1.08994 * 109.47411 * 300.00005 * 15 14 13 45 45 H 1.09000 * 109.47348 * 60.00583 * 15 14 13 46 46 H 1.08000 * 118.17070 * 0.85916 * 17 16 15 47 47 H 1.08995 * 109.67509 * 229.47495 * 18 17 16 48 48 H 1.09006 * 109.38498 * 109.34589 * 18 17 16 49 49 H 0.96991 * 119.99927 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.77796 * 178.61959 * 28 19 18 51 51 H 1.09001 * 109.78094 * 57.80983 * 28 19 18 52 52 H 1.09002 * 109.30958 * 281.29053 * 29 16 15 53 53 H 1.08997 * 109.31146 * 40.90198 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.5051 -1.6599 1.3941 6 6 1.8962 0.1871 2.4986 7 6 3.2164 -0.0958 3.2595 8 8 4.1903 -0.2381 2.2031 9 6 3.5563 -0.9752 1.1444 10 1 3.7626 -2.0393 1.2584 11 6 4.0651 -0.4949 -0.1904 12 8 4.8459 0.4316 -0.2440 13 7 3.6481 -1.0914 -1.3248 14 6 4.2216 -0.6961 -2.6136 15 6 3.5804 -1.5208 -3.7315 16 6 4.1699 -1.1138 -5.0574 17 6 5.1637 -1.8077 -5.5123 18 6 5.8600 -1.5128 -6.8114 19 7 5.0843 -0.5129 -7.5597 20 6 4.8769 -0.6346 -8.9077 21 1 3.9707 -0.2494 -9.3515 22 6 5.8311 -1.2530 -9.7039 23 7 6.9870 -1.6123 -9.1868 24 14 5.4749 -1.5752 -11.5091 25 1 5.2120 -0.2870 -12.1994 26 1 6.6458 -2.2420 -12.1333 27 1 4.2835 -2.4535 -11.6293 28 6 4.5391 0.6251 -6.7992 29 6 3.5679 0.0700 -5.7540 30 1 -0.3634 0.4419 0.9278 31 1 -0.3633 0.5826 -0.8466 32 1 -0.3634 -1.0244 -0.0813 33 1 1.8933 -0.5139 -0.8899 34 1 3.1181 1.4466 0.1610 35 1 1.8141 1.9077 -0.9594 36 1 1.5514 2.0006 0.7986 37 1 1.0326 -0.1076 3.0949 38 1 1.8292 1.2369 2.2128 39 1 3.1375 -1.0179 3.8355 40 1 3.4730 0.7420 3.9079 41 1 2.9683 -1.7823 -1.2878 42 1 4.0300 0.3628 -2.7871 43 1 5.2969 -0.8738 -2.6026 44 1 3.7723 -2.5796 -3.5578 45 1 2.5050 -1.3435 -3.7427 46 1 5.5089 -2.6477 -4.9279 47 1 5.9406 -2.4265 -7.4002 48 1 6.8569 -1.1221 -6.6071 49 1 7.6536 -2.0448 -9.7431 50 1 4.0102 1.2993 -7.4728 51 1 5.3494 1.1592 -6.3029 52 1 2.6434 -0.2329 -6.2457 53 1 3.3487 0.8464 -5.0211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160163264.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:36 Heat of formation + Delta-G solvation = -59.794424 kcal Electronic energy + Delta-G solvation = -30211.100643 eV Core-core repulsion = 26276.001555 eV Total energy + Delta-G solvation = -3935.099088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.07443 -39.74655 -39.21156 -37.02693 -36.48167 -35.05820 -33.19886 -31.58886 -31.52409 -31.08406 -29.59602 -28.10310 -27.07785 -25.02302 -24.41879 -23.91893 -23.39352 -22.47415 -21.65787 -20.24789 -19.45429 -18.24533 -17.69547 -17.68576 -17.16114 -16.99249 -16.78592 -16.08227 -15.93528 -15.68832 -15.57637 -15.37156 -15.16512 -14.94435 -14.64261 -14.33860 -14.20181 -13.91491 -13.69241 -13.37466 -13.31739 -13.20770 -12.91031 -12.85833 -12.70967 -12.66036 -12.62244 -12.45755 -12.34362 -12.22391 -12.10812 -11.91938 -11.76695 -11.66208 -11.43133 -11.31782 -11.21205 -11.01726 -10.68974 -10.45396 -9.91107 -9.48184 -8.65109 -7.88441 -5.39096 1.41326 1.46038 1.48804 1.55409 1.57307 1.99897 2.49790 3.05413 3.29503 3.39141 3.59110 3.68758 3.73414 3.96120 3.98405 4.10841 4.14661 4.15581 4.27313 4.30427 4.32524 4.38092 4.44690 4.55306 4.59763 4.70179 4.76007 4.78429 4.83423 4.85699 4.87243 4.88585 4.92341 4.98770 5.08020 5.10193 5.12823 5.18968 5.21760 5.24197 5.30824 5.39127 5.41960 5.47090 5.49355 5.52105 5.60806 5.82975 5.88741 6.29742 6.37115 6.53542 7.14425 7.23730 7.81756 8.40140 9.19622 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.002126 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.391642 B =13169.246917 C =13620.466783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C -0.167 4.167 4 C -0.101 4.101 5 H 0.128 0.872 6 C -0.154 4.154 7 C 0.037 3.963 8 O -0.386 6.386 9 C 0.059 3.941 10 H 0.117 0.883 11 C 0.518 3.482 12 O -0.572 6.572 13 N -0.710 5.710 14 C 0.134 3.866 15 C -0.077 4.077 16 C -0.120 4.120 17 C -0.175 4.175 18 C 0.209 3.791 19 N -0.615 5.615 20 C -0.262 4.262 21 H 0.068 0.932 22 C -0.053 4.053 23 N -0.941 5.941 24 Si 0.974 3.026 25 H -0.275 1.275 26 H -0.294 1.294 27 H -0.275 1.275 28 C 0.135 3.865 29 C -0.086 4.086 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.419 0.581 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.113 0.887 47 H 0.052 0.948 48 H 0.000 1.000 49 H 0.250 0.750 50 H 0.058 0.942 51 H 0.014 0.986 52 H 0.070 0.930 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.209 -1.976 26.585 31.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C -0.224 4.224 4 C -0.119 4.119 5 H 0.146 0.854 6 C -0.191 4.191 7 C -0.039 4.039 8 O -0.305 6.305 9 C -0.002 4.002 10 H 0.135 0.865 11 C 0.306 3.694 12 O -0.451 6.451 13 N -0.367 5.367 14 C 0.010 3.990 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.195 4.195 18 C 0.084 3.916 19 N -0.339 5.339 20 C -0.392 4.392 21 H 0.086 0.914 22 C -0.248 4.248 23 N -0.587 5.587 24 Si 0.802 3.198 25 H -0.201 1.201 26 H -0.220 1.220 27 H -0.200 1.200 28 C 0.010 3.990 29 C -0.125 4.125 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.258 0.742 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.113 0.887 46 H 0.131 0.869 47 H 0.070 0.930 48 H 0.018 0.982 49 H 0.059 0.941 50 H 0.077 0.923 51 H 0.032 0.968 52 H 0.088 0.912 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.291 -1.320 26.457 31.098 hybrid contribution 0.432 -0.257 -1.310 1.403 sum -15.859 -1.577 25.147 29.772 Atomic orbital electron populations 1.21785 0.93139 1.02754 1.01996 1.21681 0.97580 0.95708 0.98220 1.22225 1.01644 0.97347 1.01149 1.22725 0.91549 1.01541 0.96131 0.85444 1.23467 0.98831 1.01137 0.95650 1.23859 0.87267 1.02685 0.90067 1.88988 1.37567 1.76410 1.27531 1.22955 0.94272 0.97576 0.85439 0.86512 1.20869 0.80038 0.81882 0.86638 1.90711 1.36739 1.29759 1.87859 1.46094 1.43092 1.41990 1.05493 1.21145 0.97148 0.99046 0.81672 1.20803 1.00978 1.00045 0.89625 1.20573 0.97317 0.97820 0.96363 1.22850 0.98182 1.00273 0.98167 1.19313 0.91016 0.92424 0.88854 1.44334 1.62646 1.22542 1.04406 1.19452 1.00407 1.35529 0.83827 0.91408 1.26035 0.94772 1.01760 1.02208 1.70146 1.06602 1.45486 1.36505 0.85244 0.76778 0.78053 0.79757 1.20054 1.21997 1.20045 1.21152 0.94822 0.89598 0.93429 1.20707 0.98421 0.95978 0.97388 0.92162 0.93171 0.90896 0.88941 0.93245 0.93843 0.91765 0.87251 0.90459 0.89781 0.88556 0.74190 0.92556 0.93569 0.89551 0.88651 0.86872 0.92977 0.98211 0.94076 0.92335 0.96824 0.91193 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.12 71.98 0.66 -0.56 16 2 C -0.11 -1.39 2.22 -10.80 -0.02 -1.41 16 3 C -0.17 -3.15 7.84 71.98 0.56 -2.59 16 4 C -0.10 -0.98 2.84 -9.69 -0.03 -1.01 16 5 H 0.13 0.44 8.10 -2.39 -0.02 0.42 16 6 C -0.15 -1.45 6.04 32.01 0.19 -1.26 16 7 C 0.04 0.46 7.72 72.66 0.56 1.02 16 8 O -0.39 -8.56 10.74 -130.27 -1.40 -9.96 16 9 C 0.06 0.97 3.67 30.22 0.11 1.08 16 10 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 11 C 0.52 12.13 4.56 87.66 0.40 12.53 16 12 O -0.57 -19.87 14.94 15.67 0.23 -19.63 16 13 N -0.71 -12.68 3.81 -463.07 -1.76 -14.45 16 14 C 0.13 3.14 5.66 86.38 0.49 3.63 16 15 C -0.08 -1.65 5.32 29.85 0.16 -1.49 16 16 C -0.12 -3.87 5.11 -15.14 -0.08 -3.95 16 17 C -0.18 -6.78 9.47 27.10 0.26 -6.52 16 18 C 0.21 10.65 5.14 85.41 0.44 11.08 16 19 N -0.61 -32.28 2.99 -703.41 -2.11 -34.39 16 20 C -0.26 -14.81 9.67 84.03 0.81 -14.00 16 21 H 0.07 3.69 7.84 -2.91 -0.02 3.67 16 22 C -0.05 -3.02 5.17 84.86 0.44 -2.58 16 23 N -0.94 -57.17 11.06 21.65 0.24 -56.93 16 24 Si 0.97 45.53 29.56 68.60 2.03 47.56 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 28 C 0.14 5.83 6.58 86.25 0.57 6.39 16 29 C -0.09 -2.88 5.94 29.65 0.18 -2.71 16 30 H 0.06 0.46 7.76 -2.39 -0.02 0.44 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 1.15 4.30 -2.39 -0.01 1.14 16 34 H 0.05 1.29 4.67 -2.38 -0.01 1.27 16 35 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 1.06 6.23 -2.38 -0.01 1.04 16 37 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.08 0.97 5.16 -2.38 -0.01 0.96 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.42 4.25 7.35 -92.71 -0.68 3.57 16 42 H 0.06 1.51 8.09 -2.39 -0.02 1.49 16 43 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.09 1.61 7.79 -2.39 -0.02 1.60 16 45 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 46 H 0.11 3.80 7.74 -2.91 -0.02 3.77 16 47 H 0.05 2.96 6.65 -2.39 -0.02 2.94 16 48 H 0.00 0.01 8.13 -2.38 -0.02 -0.01 16 49 H 0.25 14.71 8.31 -92.72 -0.77 13.94 16 50 H 0.06 2.43 7.96 -2.39 -0.02 2.41 16 51 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 53 H 0.08 2.32 8.08 -2.39 -0.02 2.31 16 Total: -1.00 -77.74 400.18 3.14 -74.60 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.21 Total: 15.53 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 5.70 Total: -2.33 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -3.63 Total: -105.77 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -1.16 Total: -29.59 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -77.74 3.14 -74.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160163264.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.807 kcal (2) G-P(sol) polarization free energy of solvation -77.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds