Wall clock time and date at job start Tue Mar 31 2020 20:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99916 * 2 1 4 4 C 1.53007 * 109.46556 * 120.00117 * 3 2 1 5 5 O 1.42896 * 109.47402 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47079 * 239.99847 * 3 2 1 7 7 C 1.50702 * 109.47253 * 55.20231 * 6 3 2 8 8 O 1.21286 * 119.99818 * 5.79183 * 7 6 3 9 9 N 1.34771 * 120.00139 * 185.80144 * 7 6 3 10 10 C 1.46925 * 120.63033 * 179.97438 * 9 7 6 11 11 C 1.53194 * 108.77673 * 126.36872 * 10 9 7 12 12 C 1.53046 * 109.31063 * 54.63363 * 11 10 9 13 13 C 1.53001 * 109.46007 * 178.62910 * 12 11 10 14 14 H 1.08994 * 109.87232 * 184.14198 * 13 12 11 15 15 C 1.54326 * 109.88094 * 63.13133 * 13 12 11 16 16 C 1.55160 * 102.93890 * 218.38893 * 15 13 12 17 17 C 1.54907 * 101.58355 * 35.50453 * 16 15 13 18 18 N 1.47018 * 109.88048 * 305.32018 * 13 12 11 19 19 C 1.36932 * 125.65062 * 298.33077 * 18 13 12 20 20 H 1.07998 * 120.00274 * 344.74165 * 19 18 13 21 21 C 1.38814 * 119.99837 * 164.73079 * 19 18 13 22 22 N 1.31621 * 120.00281 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99933 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46765 * 60.00630 * 23 21 19 25 25 H 1.48496 * 109.47031 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47213 * 300.00590 * 23 21 19 27 27 C 1.53037 * 109.54041 * 298.63973 * 12 11 10 28 28 C 1.46927 * 120.62908 * 359.97362 * 9 7 6 29 29 H 1.07996 * 119.99813 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00066 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.00103 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46351 * 175.59507 * 4 3 2 33 33 H 1.08993 * 109.46956 * 295.59707 * 4 3 2 34 34 H 1.08995 * 109.47054 * 55.59968 * 4 3 2 35 35 H 0.96705 * 113.99585 * 299.99984 * 5 3 2 36 36 H 1.09000 * 109.47800 * 295.19578 * 6 3 2 37 37 H 1.09002 * 109.46988 * 175.19539 * 6 3 2 38 38 H 1.09005 * 109.58647 * 6.58601 * 10 9 7 39 39 H 1.08999 * 109.70823 * 246.22435 * 10 9 7 40 40 H 1.09003 * 109.49503 * 294.69060 * 11 10 9 41 41 H 1.08996 * 109.50292 * 174.58892 * 11 10 9 42 42 H 1.09001 * 109.45972 * 58.65644 * 12 11 10 43 43 H 1.09006 * 110.72039 * 336.74679 * 15 13 12 44 44 H 1.08999 * 110.72178 * 99.84596 * 15 13 12 45 45 H 1.09002 * 111.00062 * 153.57742 * 16 15 13 46 46 H 1.08994 * 111.00380 * 277.42181 * 16 15 13 47 47 H 1.08997 * 110.37370 * 81.82701 * 17 16 15 48 48 H 1.08996 * 110.36373 * 204.04519 * 17 16 15 49 49 H 0.97000 * 120.00466 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.49933 * 181.31451 * 27 12 11 51 51 H 1.09004 * 109.49744 * 301.41385 * 27 12 11 52 52 H 1.08993 * 109.58913 * 353.41870 * 28 9 7 53 53 H 1.09008 * 109.58821 * 113.70421 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3861 1.2493 5 8 1.1350 2.3913 0.0006 6 6 2.9431 1.3862 -1.2492 7 6 2.0917 1.1884 -2.4768 8 8 0.8862 1.1061 -2.3719 9 7 2.6699 1.1027 -3.6912 10 6 1.8531 0.9093 -4.8972 11 6 2.2007 2.0057 -5.9091 12 6 3.7098 1.9990 -6.1642 13 6 4.0563 3.0701 -7.2003 14 1 5.1182 3.0224 -7.4415 15 6 3.7061 4.4678 -6.6475 16 6 3.1472 5.2042 -7.8936 17 6 2.4092 4.0571 -8.6278 18 7 3.2545 2.8679 -8.4159 19 6 3.2878 1.7591 -9.2186 20 1 4.1007 1.0534 -9.1313 21 6 2.2766 1.5420 -10.1445 22 7 1.2861 2.4022 -10.2512 23 14 2.3217 0.0289 -11.2392 24 1 2.3039 -1.1931 -10.3955 25 1 1.1368 0.0302 -12.1343 26 1 3.5603 0.0471 -12.0581 27 6 4.4510 2.2944 -4.8583 28 6 4.1288 1.2009 -3.8343 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 3.5463 2.2932 1.2107 33 1 2.3117 1.4071 2.1375 34 1 3.5980 0.5157 1.2896 35 1 0.5433 2.4034 -0.7643 36 1 3.7064 0.6092 -1.2073 37 1 3.4224 2.3642 -1.2933 38 1 0.7965 0.9739 -4.6371 39 1 2.0637 -0.0682 -5.3309 40 1 1.9034 2.9758 -5.5109 41 1 1.6729 1.8184 -6.8442 42 1 4.0104 1.0205 -6.5390 43 1 2.9462 4.3954 -5.8693 44 1 4.5978 4.9672 -6.2686 45 1 2.4528 5.9924 -7.6027 46 1 3.9552 5.6041 -8.5061 47 1 1.4213 3.9025 -8.1938 48 1 2.3248 4.2799 -9.6914 49 1 0.5797 2.2507 -10.8985 50 1 5.5246 2.3125 -5.0454 51 1 4.1324 3.2618 -4.4700 52 1 4.5738 1.4578 -2.8731 53 1 4.5274 0.2464 -4.1781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230557847.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:55 Heat of formation + Delta-G solvation = -62.474230 kcal Electronic energy + Delta-G solvation = -31290.718547 eV Core-core repulsion = 27355.503254 eV Total energy + Delta-G solvation = -3935.215293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.57879 -40.21824 -38.82540 -37.43419 -34.72328 -34.01228 -33.68446 -32.48126 -31.76627 -31.17789 -29.47067 -28.58389 -26.52461 -25.19532 -24.23701 -23.29262 -22.56105 -21.81452 -20.84235 -20.34920 -19.47476 -18.63344 -18.18338 -17.62482 -17.19123 -16.82117 -16.46725 -16.36746 -15.86954 -15.71819 -15.45312 -15.20843 -14.88847 -14.46603 -14.27126 -14.03163 -13.85314 -13.60367 -13.43700 -13.36196 -13.23363 -13.02189 -13.00106 -12.89951 -12.82381 -12.74147 -12.58694 -12.53902 -12.13211 -12.06786 -11.91649 -11.83721 -11.73929 -11.48822 -11.27846 -11.17792 -11.05308 -10.89971 -10.74631 -10.60112 -10.05056 -9.57414 -8.70269 -7.81460 -5.15896 1.45183 1.46626 1.46863 1.52711 1.66834 2.04488 2.51742 3.35282 3.37640 3.51086 3.67804 3.82082 3.87092 3.92527 3.99505 4.10385 4.24575 4.25427 4.27947 4.34800 4.38332 4.41815 4.44449 4.58172 4.63422 4.70673 4.73036 4.81673 4.84474 4.88695 4.90693 4.93059 4.97773 5.08645 5.10724 5.15367 5.19612 5.23762 5.28347 5.32801 5.34850 5.53782 5.59624 5.68559 5.70108 5.72039 5.76130 5.82582 5.93923 6.30523 6.49146 6.72006 7.16474 7.22220 7.86847 8.55142 9.29903 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.003016 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.831777 B = 9280.348169 C = 9943.163422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.190 4.190 3 C 0.168 3.832 4 C -0.131 4.131 5 O -0.577 6.577 6 C -0.157 4.157 7 C 0.507 3.493 8 O -0.577 6.577 9 N -0.604 5.604 10 C 0.122 3.878 11 C -0.100 4.100 12 C -0.083 4.083 13 C 0.157 3.843 14 H 0.034 0.966 15 C -0.112 4.112 16 C -0.140 4.140 17 C 0.181 3.819 18 N -0.608 5.608 19 C -0.223 4.223 20 H 0.075 0.925 21 C -0.061 4.061 22 N -0.948 5.948 23 Si 0.964 3.036 24 H -0.279 1.279 25 H -0.300 1.300 26 H -0.279 1.279 27 C -0.121 4.121 28 C 0.105 3.895 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.381 0.619 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.063 0.937 47 H -0.009 1.009 48 H 0.025 0.975 49 H 0.243 0.757 50 H 0.095 0.905 51 H 0.072 0.928 52 H 0.120 0.880 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.393 -1.234 21.855 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.208 4.208 3 C 0.127 3.873 4 C -0.188 4.188 5 O -0.387 6.387 6 C -0.196 4.196 7 C 0.298 3.702 8 O -0.458 6.458 9 N -0.336 5.336 10 C -0.002 4.002 11 C -0.138 4.138 12 C -0.104 4.104 13 C 0.051 3.949 14 H 0.052 0.948 15 C -0.150 4.150 16 C -0.178 4.178 17 C 0.055 3.945 18 N -0.332 5.332 19 C -0.352 4.352 20 H 0.093 0.907 21 C -0.255 4.255 22 N -0.596 5.596 23 Si 0.793 3.207 24 H -0.205 1.205 25 H -0.227 1.227 26 H -0.205 1.205 27 C -0.160 4.160 28 C -0.017 4.017 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.141 0.859 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.233 0.767 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.009 0.991 48 H 0.043 0.957 49 H 0.052 0.948 50 H 0.113 0.887 51 H 0.090 0.910 52 H 0.138 0.862 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.969 -1.230 22.275 24.045 hybrid contribution -1.245 -1.095 -2.211 2.763 sum 7.723 -2.324 20.065 21.625 Atomic orbital electron populations 1.23660 0.96708 1.01373 0.98970 1.23515 0.96713 0.98868 1.01711 1.20123 0.88116 0.84275 0.94806 1.21739 0.98571 1.04049 0.94458 1.86409 1.51441 1.49825 1.51029 1.22502 0.99532 1.06996 0.90589 1.21266 0.88691 0.75137 0.85147 1.90622 1.16566 1.52343 1.86258 1.48241 1.08621 1.71072 1.05698 1.21360 0.95568 0.98193 0.85045 1.21577 0.97582 0.97395 0.97249 1.21412 0.94132 0.99162 0.95683 1.21203 0.93860 0.93996 0.85878 0.94795 1.22594 1.01221 0.94493 0.96655 1.22889 0.99919 0.97431 0.97595 1.21110 0.91244 0.85251 0.96845 1.44674 1.47041 1.16128 1.25390 1.19166 1.04079 0.99496 1.12482 0.90728 1.25571 0.96476 1.00905 1.02503 1.70137 1.13285 1.37532 1.38690 0.85370 0.76480 0.80197 0.78628 1.20507 1.22675 1.20473 1.21958 1.01316 0.99111 0.93575 1.22040 0.78133 0.99796 1.01698 0.89365 0.88526 0.85944 0.90731 0.92398 0.88612 0.76674 0.84992 0.86029 0.91527 0.92417 0.93149 0.93813 0.93455 0.91442 0.89027 0.90771 0.91868 0.99130 0.95670 0.94765 0.88668 0.90953 0.86212 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 12.61 67.78 0.85 -3.07 16 2 C -0.19 -3.80 7.40 25.65 0.19 -3.61 16 3 C 0.17 3.03 1.08 -11.54 -0.01 3.02 16 4 C -0.13 -1.64 8.82 71.98 0.64 -1.00 16 5 O -0.58 -13.92 11.94 -133.06 -1.59 -15.51 16 6 C -0.16 -2.33 3.36 29.85 0.10 -2.23 16 7 C 0.51 12.02 7.17 87.66 0.63 12.65 16 8 O -0.58 -17.71 11.37 12.87 0.15 -17.57 16 9 N -0.60 -14.42 2.97 -818.83 -2.43 -16.86 16 10 C 0.12 3.85 6.43 86.36 0.56 4.41 16 11 C -0.10 -3.58 4.94 30.67 0.15 -3.43 16 12 C -0.08 -2.63 1.91 -10.77 -0.02 -2.65 16 13 C 0.16 5.72 2.99 45.34 0.14 5.86 16 14 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 15 C -0.11 -3.43 5.18 31.78 0.16 -3.27 16 16 C -0.14 -5.02 7.08 31.99 0.23 -4.80 16 17 C 0.18 8.80 5.40 86.85 0.47 9.27 16 18 N -0.61 -29.36 2.15 -668.26 -1.44 -30.80 16 19 C -0.22 -11.96 9.84 84.03 0.83 -11.13 16 20 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 21 C -0.06 -3.44 5.47 84.86 0.46 -2.97 16 22 N -0.95 -56.89 10.60 21.65 0.23 -56.66 16 23 Si 0.96 45.66 29.55 68.60 2.03 47.69 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 C -0.12 -2.47 5.05 30.68 0.15 -2.32 16 28 C 0.10 1.76 6.30 86.37 0.54 2.30 16 29 H 0.09 2.24 6.41 -2.91 -0.02 2.22 16 30 H 0.10 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.38 10.03 5.83 -74.05 -0.43 9.60 16 36 H 0.13 1.14 7.65 -2.39 -0.02 1.12 16 37 H 0.12 1.45 7.94 -2.39 -0.02 1.43 16 38 H 0.07 2.35 7.01 -2.38 -0.02 2.34 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.82 6.30 -2.39 -0.02 1.81 16 41 H 0.04 2.05 7.39 -2.39 -0.02 2.04 16 42 H 0.05 1.68 8.12 -2.39 -0.02 1.66 16 43 H 0.07 2.05 5.51 -2.38 -0.01 2.04 16 44 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 47 H -0.01 -0.51 8.05 -2.39 -0.02 -0.53 16 48 H 0.02 1.40 6.98 -2.39 -0.02 1.38 16 49 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 50 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.07 1.44 6.90 -2.38 -0.02 1.42 16 52 H 0.12 1.09 5.95 -2.39 -0.01 1.08 16 53 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -70.17 394.66 3.47 -66.71 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.45 Total: 25.98 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 6.07 Total: -2.98 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -3.64 Total: -104.32 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.44 Total: -33.07 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -70.17 3.47 -66.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230557847.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.232 kcal (2) G-P(sol) polarization free energy of solvation -70.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds