Wall clock time and date at job start Tue Mar 31 2020 20:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50704 * 120.00165 * 2 1 4 4 C 1.53005 * 109.46851 * 125.00330 * 3 2 1 5 5 O 1.42905 * 109.46855 * 180.02562 * 4 3 2 6 6 C 1.42898 * 113.99483 * 179.97438 * 5 4 3 7 7 C 1.50709 * 109.46607 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00170 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99731 * 180.02562 * 7 6 5 10 10 C 1.46921 * 120.62780 * 180.02562 * 9 7 6 11 11 C 1.53197 * 108.77667 * 233.58596 * 10 9 7 12 12 C 1.53045 * 109.31027 * 305.36494 * 11 10 9 13 13 C 1.53001 * 109.45765 * 181.38240 * 12 11 10 14 14 H 1.08994 * 109.99876 * 51.96043 * 13 12 11 15 15 C 1.54311 * 109.77155 * 173.11591 * 13 12 11 16 16 C 1.55157 * 102.86266 * 141.88604 * 15 13 12 17 17 C 1.54907 * 101.58136 * 324.30168 * 16 15 13 18 18 N 1.47025 * 109.88521 * 290.86418 * 13 12 11 19 19 C 1.36936 * 125.64407 * 61.67426 * 18 13 12 20 20 H 1.07994 * 120.00771 * 301.13572 * 19 18 13 21 21 C 1.38819 * 119.99564 * 121.41207 * 19 18 13 22 22 N 1.31618 * 120.00162 * 175.56702 * 21 19 18 23 23 Si 1.86802 * 119.99779 * 355.57087 * 21 19 18 24 24 H 1.48496 * 109.47341 * 84.84255 * 23 21 19 25 25 H 1.48505 * 109.46882 * 204.84146 * 23 21 19 26 26 H 1.48496 * 109.47063 * 324.83594 * 23 21 19 27 27 C 1.53047 * 109.52598 * 61.37191 * 12 11 10 28 28 C 1.46923 * 120.63300 * 359.97438 * 9 7 6 29 29 H 1.08005 * 119.99786 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.00137 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.00310 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.46813 * 5.00500 * 3 2 1 33 33 H 1.09000 * 109.47477 * 245.00320 * 3 2 1 34 34 H 1.09004 * 109.47183 * 60.00494 * 4 3 2 35 35 H 1.09000 * 109.47071 * 300.00238 * 4 3 2 36 36 H 1.08996 * 109.47351 * 60.00283 * 6 5 4 37 37 H 1.09003 * 109.47388 * 299.99634 * 6 5 4 38 38 H 1.09002 * 109.59052 * 113.79766 * 10 9 7 39 39 H 1.09004 * 109.70901 * 353.44314 * 10 9 7 40 40 H 1.09000 * 109.50074 * 185.41623 * 11 10 9 41 41 H 1.08993 * 109.49607 * 65.31659 * 11 10 9 42 42 H 1.08998 * 109.46114 * 301.36047 * 12 11 10 43 43 H 1.08999 * 110.92904 * 23.47430 * 15 13 12 44 44 H 1.08998 * 110.59043 * 260.14413 * 15 13 12 45 45 H 1.09002 * 111.00791 * 206.23036 * 16 15 13 46 46 H 1.09000 * 111.03742 * 82.39269 * 16 15 13 47 47 H 1.08997 * 110.36856 * 278.16731 * 17 16 15 48 48 H 1.09008 * 110.45828 * 155.89512 * 17 16 15 49 49 H 0.96997 * 120.00014 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.49446 * 58.57529 * 27 12 11 51 51 H 1.08998 * 109.49754 * 178.67683 * 27 12 11 52 52 H 1.09002 * 109.58741 * 246.20000 * 28 9 7 53 53 H 1.09004 * 109.58468 * 6.48282 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7492 2.5708 1.1820 6 6 4.6878 2.6998 2.2517 7 6 5.3791 4.0356 2.1549 8 8 5.0961 4.8012 1.2580 9 7 6.3125 4.3787 3.0646 10 6 6.9945 5.6775 2.9838 11 6 8.5081 5.4408 2.9899 12 6 8.8852 4.6081 4.2174 13 6 10.4005 4.3989 4.2454 14 1 10.9110 5.3573 4.1517 15 6 10.8082 3.7110 5.5653 16 6 11.9310 2.7392 5.1158 17 6 11.4219 2.2999 3.7203 18 7 10.8028 3.5086 3.1467 19 6 10.6353 3.7627 1.8116 20 1 9.6459 3.9348 1.4146 21 6 11.7369 3.7935 0.9675 22 7 11.5688 3.9508 -0.3284 23 14 13.4579 3.6115 1.6708 24 1 13.7836 2.1700 1.8156 25 1 14.4369 4.2507 0.7552 26 1 13.5213 4.2694 3.0006 27 6 8.1840 3.2494 4.1489 28 6 6.6664 3.4616 4.1565 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6212 1.4027 -0.9314 34 1 3.7400 0.5064 1.0920 35 1 2.4773 1.2354 2.1130 36 1 5.4273 1.9019 2.1845 37 1 4.1641 2.6305 3.2051 38 1 6.7170 6.2900 3.8416 39 1 6.7081 6.1865 2.0635 40 1 9.0261 6.3991 3.0274 41 1 8.7964 4.9061 2.0850 42 1 8.5741 5.1320 5.1212 43 1 9.9700 3.1606 5.9925 44 1 11.1929 4.4425 6.2758 45 1 12.0036 1.8868 5.7913 46 1 12.8877 3.2558 5.0379 47 1 10.6824 1.5052 3.8191 48 1 12.2535 1.9680 3.0984 49 1 12.3386 3.9727 -0.9182 50 1 8.4754 2.7355 3.2328 51 1 8.4713 2.6479 5.0112 52 1 6.3622 3.8938 5.1098 53 1 6.1610 2.5070 4.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230629457.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:41 Heat of formation + Delta-G solvation = -38.501627 kcal Electronic energy + Delta-G solvation = -30510.848715 eV Core-core repulsion = 26576.672952 eV Total energy + Delta-G solvation = -3934.175763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.09328 -38.68942 -37.78012 -36.23525 -35.15991 -32.76367 -32.63029 -30.95743 -30.03111 -29.83420 -28.35431 -27.04605 -24.63193 -23.66493 -23.22080 -22.86933 -20.94889 -20.38227 -20.05635 -19.27912 -18.44740 -17.31054 -16.94223 -16.61177 -16.36444 -15.78546 -15.50399 -15.39583 -14.74795 -14.61596 -14.08573 -13.89412 -13.77014 -13.58171 -13.23108 -13.15335 -13.02866 -12.74644 -12.51785 -12.42438 -12.30033 -11.87064 -11.65129 -11.52358 -11.40258 -11.30129 -11.29789 -11.11851 -10.97315 -10.81038 -10.58228 -10.47121 -10.19969 -9.92475 -9.81367 -9.80550 -9.65446 -9.59917 -9.43950 -9.25443 -8.51406 -8.31701 -6.38555 -5.93416 -3.74661 1.94197 2.80241 2.90711 3.30885 3.42367 3.49358 3.81618 4.49297 4.60545 4.71920 4.82355 4.93494 4.97644 5.03236 5.06391 5.13796 5.14489 5.19741 5.22895 5.33076 5.37598 5.46062 5.52633 5.56231 5.59900 5.62848 5.69539 5.72288 5.81178 5.85356 5.90873 6.02765 6.16332 6.17362 6.21402 6.32608 6.34708 6.37461 6.39385 6.45563 6.59390 6.64543 6.77171 6.84917 6.86641 6.91517 7.00153 7.06856 7.27370 7.63010 8.12367 8.41757 8.54102 8.87587 9.61899 10.34762 11.11424 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.002787 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.078535 B =10042.971930 C =10618.090860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.364 6.364 6 C 0.048 3.952 7 C 0.516 3.484 8 O -0.525 6.525 9 N -0.603 5.603 10 C 0.115 3.885 11 C -0.145 4.145 12 C -0.083 4.083 13 C 0.158 3.842 14 H 0.040 0.960 15 C -0.128 4.128 16 C -0.139 4.139 17 C 0.116 3.884 18 N -0.597 5.597 19 C -0.257 4.257 20 H 0.084 0.916 21 C 0.048 3.952 22 N -0.900 5.900 23 Si 0.895 3.105 24 H -0.285 1.285 25 H -0.304 1.304 26 H -0.266 1.266 27 C -0.121 4.121 28 C 0.106 3.894 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.115 0.885 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.025 0.975 48 H 0.040 0.960 49 H 0.265 0.735 50 H 0.087 0.913 51 H 0.065 0.935 52 H 0.063 0.937 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.061 -5.996 11.276 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.169 4.169 3 C -0.131 4.131 4 C -0.012 4.012 5 O -0.282 6.282 6 C -0.032 4.032 7 C 0.303 3.697 8 O -0.400 6.400 9 N -0.338 5.338 10 C -0.006 4.006 11 C -0.182 4.182 12 C -0.104 4.104 13 C 0.052 3.948 14 H 0.058 0.942 15 C -0.165 4.165 16 C -0.177 4.177 17 C -0.008 4.008 18 N -0.324 5.324 19 C -0.386 4.386 20 H 0.101 0.899 21 C -0.155 4.155 22 N -0.539 5.539 23 Si 0.725 3.275 24 H -0.212 1.212 25 H -0.231 1.231 26 H -0.191 1.191 27 C -0.159 4.159 28 C -0.017 4.017 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.133 0.867 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.043 0.957 48 H 0.058 0.942 49 H 0.075 0.925 50 H 0.106 0.894 51 H 0.083 0.917 52 H 0.081 0.919 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.181 -5.395 10.364 18.375 hybrid contribution 1.209 -0.473 0.593 1.427 sum -12.972 -5.868 10.957 17.966 Atomic orbital electron populations 1.23892 0.95888 1.01986 1.01009 1.22829 0.96007 0.98081 0.99994 1.20648 0.97932 0.95772 0.98787 1.22476 0.94007 0.86364 0.98326 1.87999 1.54354 1.37167 1.48657 1.22235 0.92956 0.96621 0.91377 1.20099 0.79903 0.87963 0.81781 1.90705 1.63616 1.52490 1.33217 1.47994 1.38870 1.18902 1.28057 1.21678 0.93462 0.83351 1.02136 1.22401 0.92453 1.01041 1.02339 1.21419 0.97300 0.94936 0.96730 1.21139 0.91872 0.94183 0.87583 0.94232 1.22625 0.98135 0.98392 0.97395 1.22781 0.98383 0.98629 0.97914 1.21910 0.95767 0.91265 0.91871 1.44464 1.71834 1.14581 1.01491 1.18494 0.93076 1.46942 0.80043 0.89893 1.26021 0.98653 0.95507 0.95295 1.69783 1.30915 1.50366 1.02828 0.86586 0.84490 0.77486 0.78889 1.21179 1.23142 1.19102 1.21902 0.91800 0.98535 1.03685 1.21849 0.97742 0.92667 0.89397 0.88433 0.88361 0.87119 0.90533 0.89730 0.92907 0.93221 0.90093 0.90711 0.92645 0.89507 0.91719 0.86749 0.93061 0.91539 0.92323 0.92147 0.92039 0.95697 0.94175 0.92521 0.89441 0.91691 0.91878 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.39 14.32 29.02 0.42 -0.97 16 2 C -0.15 -1.22 9.52 -36.02 -0.34 -1.56 16 3 C -0.09 -0.92 6.03 -27.88 -0.17 -1.09 16 4 C 0.07 0.68 5.92 37.16 0.22 0.90 16 5 O -0.36 -5.35 9.88 -55.14 -0.54 -5.90 16 6 C 0.05 0.63 4.76 36.01 0.17 0.80 16 7 C 0.52 8.78 7.78 -10.98 -0.09 8.69 16 8 O -0.52 -11.24 15.92 -14.35 -0.23 -11.47 16 9 N -0.60 -9.25 2.97 -172.73 -0.51 -9.76 16 10 C 0.12 1.86 6.43 -3.71 -0.02 1.83 16 11 C -0.15 -2.58 5.00 -26.61 -0.13 -2.72 16 12 C -0.08 -1.32 1.90 -90.57 -0.17 -1.49 16 13 C 0.16 2.89 2.93 -66.96 -0.20 2.69 16 14 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 15 C -0.13 -1.91 6.29 -24.90 -0.16 -2.07 16 16 C -0.14 -2.27 7.08 -24.58 -0.17 -2.44 16 17 C 0.12 2.31 6.24 -2.53 -0.02 2.29 16 18 N -0.60 -13.00 1.29 -162.58 -0.21 -13.21 16 19 C -0.26 -6.73 8.76 -15.06 -0.13 -6.86 16 20 H 0.08 2.37 5.45 -52.49 -0.29 2.09 16 21 C 0.05 1.35 5.50 -17.43 -0.10 1.25 16 22 N -0.90 -26.96 13.97 55.49 0.78 -26.19 16 23 Si 0.90 22.12 25.50 -169.99 -4.34 17.79 16 24 H -0.28 -6.91 6.73 56.52 0.38 -6.53 16 25 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 26 H -0.27 -6.41 6.96 56.52 0.39 -6.02 16 27 C -0.12 -1.76 4.91 -26.58 -0.13 -1.89 16 28 C 0.11 1.29 6.35 -3.69 -0.02 1.27 16 29 H 0.10 0.68 7.84 -52.48 -0.41 0.27 16 30 H 0.10 0.58 8.06 -52.48 -0.42 0.16 16 31 H 0.11 0.78 8.06 -52.48 -0.42 0.36 16 32 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.95 7.69 -51.93 -0.40 0.55 16 37 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.56 7.01 -51.93 -0.36 1.20 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.11 2.56 4.24 -51.93 -0.22 2.34 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.88 6.20 -51.93 -0.32 0.56 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.07 8.00 -51.93 -0.42 0.65 16 47 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.04 0.88 4.86 -51.92 -0.25 0.63 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.09 1.60 7.19 -51.93 -0.37 1.23 16 51 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 52 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 53 H 0.07 0.73 5.93 -51.93 -0.31 0.42 16 LS Contribution 400.59 15.07 6.04 6.04 Total: -1.00 -32.42 400.59 -9.22 -41.64 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -9.16 Total: 2.42 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.04 Total: -1.36 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.05 Total: -49.16 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.77 Total: -17.37 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.34 Total: 17.79 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.42 -9.22 -41.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230629457.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.141 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds