Wall clock time and date at job start Tue Mar 31 2020 20:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46920 * 2 1 4 4 C 1.52996 * 109.47410 * 240.00304 * 2 1 3 5 5 O 1.45206 * 109.47460 * 119.99879 * 2 1 3 6 6 C 1.34638 * 116.99434 * 60.00057 * 5 2 1 7 7 O 1.21509 * 120.00358 * 359.97438 * 6 5 2 8 8 N 1.34772 * 119.99709 * 180.02562 * 6 5 2 9 9 C 1.47383 * 125.62616 * 180.02562 * 8 6 5 10 10 C 1.54330 * 105.08825 * 155.99533 * 9 8 6 11 11 H 1.09005 * 113.45143 * 273.82171 * 10 9 8 12 12 C 1.54291 * 109.50552 * 145.09402 * 10 9 8 13 13 C 1.54126 * 104.71211 * 289.02326 * 12 10 9 14 14 H 1.09004 * 110.08659 * 95.18477 * 13 12 10 15 15 N 1.46908 * 110.04313 * 216.61714 * 13 12 10 16 16 C 1.47953 * 111.00083 * 297.11260 * 15 13 12 17 17 C 1.53936 * 86.18056 * 222.41604 * 16 15 13 18 18 C 1.50695 * 113.73124 * 138.08057 * 17 16 15 19 19 H 1.08004 * 120.00546 * 2.17601 * 18 17 16 20 20 C 1.37885 * 119.99721 * 181.89852 * 18 17 16 21 21 N 1.31514 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46793 * 120.00131 * 22 20 18 25 25 H 1.48500 * 109.47000 * 240.00224 * 22 20 18 26 26 C 1.48186 * 111.07079 * 197.67499 * 15 13 12 27 27 C 1.53775 * 106.54575 * 335.88964 * 13 12 10 28 28 C 1.54184 * 107.16449 * 1.71454 * 27 13 12 29 29 H 1.08998 * 113.28615 * 257.08492 * 28 27 13 30 30 C 1.49067 * 125.37409 * 359.97438 * 8 6 5 31 31 H 1.09004 * 109.47449 * 299.99895 * 1 2 3 32 32 H 1.09004 * 109.47233 * 60.00268 * 1 2 3 33 33 H 1.09004 * 109.47328 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.46931 * 180.02562 * 3 2 1 35 35 H 1.08992 * 109.47246 * 299.99585 * 3 2 1 36 36 H 1.08997 * 109.47161 * 60.00655 * 3 2 1 37 37 H 1.09011 * 109.47056 * 299.99622 * 4 2 1 38 38 H 1.08994 * 109.47606 * 59.99431 * 4 2 1 39 39 H 1.09000 * 109.47787 * 180.02562 * 4 2 1 40 40 H 1.09000 * 110.32061 * 37.09402 * 9 8 6 41 41 H 1.08996 * 110.40363 * 274.93820 * 9 8 6 42 42 H 1.09004 * 110.38955 * 170.21130 * 12 10 9 43 43 H 1.08997 * 110.39191 * 47.83294 * 12 10 9 44 44 H 1.08999 * 113.75933 * 108.09395 * 16 15 13 45 45 H 1.09006 * 113.76042 * 336.73708 * 16 15 13 46 46 H 1.08998 * 113.73054 * 269.25287 * 17 16 15 47 47 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 48 48 H 1.09004 * 113.75716 * 23.24444 * 26 15 13 49 49 H 1.08998 * 113.83044 * 251.81325 * 26 15 13 50 50 H 1.09004 * 109.90136 * 121.10198 * 27 13 12 51 51 H 1.08997 * 109.90058 * 242.33175 * 27 13 12 52 52 H 1.09002 * 110.61815 * 61.91146 * 30 8 6 53 53 H 1.09010 * 110.10756 * 300.24755 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4171 9 6 1.7474 -4.0745 2.7073 10 6 2.8828 -4.5620 3.6320 11 1 3.7579 -4.9228 3.0914 12 6 2.3170 -5.5672 4.6566 13 6 1.4610 -4.7126 5.6118 14 1 0.4177 -4.7300 5.2965 15 7 1.5800 -5.2204 6.9852 16 6 1.0549 -6.5998 7.0878 17 6 0.4036 -6.1438 8.4060 18 6 -1.0036 -6.6494 8.5938 19 1 -1.4470 -7.2999 7.8544 20 6 -1.7230 -6.2862 9.7126 21 7 -1.1813 -5.4981 10.6155 22 14 -3.4675 -6.9123 9.9451 23 1 -3.8410 -7.7755 8.7960 24 1 -3.5474 -7.6998 11.2016 25 1 -4.4008 -5.7599 10.0230 26 6 0.4780 -4.7153 7.8374 27 6 2.0124 -3.2794 5.5302 28 6 3.1576 -3.2906 4.4979 29 1 4.1480 -3.2798 4.9529 30 6 2.9266 -2.1278 3.5100 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7216 -1.2491 40 1 1.7332 -4.6570 1.7861 41 1 0.7865 -4.1490 3.2163 42 1 3.1276 -6.0502 5.2023 43 1 1.6984 -6.3122 4.1561 44 1 1.8291 -7.3558 7.2190 45 1 0.3369 -6.8556 6.3085 46 1 1.0318 -6.3003 9.2828 47 1 -1.6876 -5.2423 11.4023 48 1 -0.4092 -4.4186 7.2778 49 1 0.7919 -3.9682 8.5664 50 1 1.2265 -2.5975 5.2053 51 1 2.3938 -2.9726 6.5041 52 1 2.4282 -1.3032 4.0198 53 1 3.8810 -1.7909 3.1051 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254899439.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:56 Heat of formation + Delta-G solvation = -64.889755 kcal Electronic energy + Delta-G solvation = -30313.597112 eV Core-core repulsion = 26378.277074 eV Total energy + Delta-G solvation = -3935.320038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.06240 -41.22320 -39.78015 -37.89798 -35.77235 -34.89848 -34.33294 -31.57496 -31.07823 -28.43393 -28.37738 -28.30148 -27.69668 -26.25332 -25.83114 -24.27639 -22.58286 -20.98673 -20.67063 -20.32177 -20.25351 -18.95071 -18.50695 -17.70901 -17.56019 -17.07896 -16.52487 -16.38426 -16.12640 -15.58014 -15.36362 -15.22977 -14.90500 -14.80172 -14.44214 -14.17690 -14.06121 -13.78078 -13.57877 -13.34665 -13.23820 -13.14767 -13.00882 -12.90443 -12.89642 -12.87078 -12.67641 -12.46786 -12.33780 -12.27871 -12.07885 -11.86335 -11.81976 -11.64098 -11.51238 -11.40266 -11.39422 -11.11562 -11.01295 -10.81359 -10.50240 -9.82960 -9.52449 -8.16086 -6.26822 1.04704 1.38785 1.41049 1.52072 1.71872 2.40702 2.81634 3.13316 3.22793 3.26221 3.54572 3.60588 3.74843 3.79311 3.94163 4.05692 4.20862 4.22916 4.26589 4.42403 4.44508 4.46728 4.53083 4.54563 4.58253 4.60471 4.63359 4.69088 4.74976 4.75271 4.83270 4.83453 4.87135 4.88483 4.91697 5.01496 5.05040 5.09667 5.12336 5.17777 5.19582 5.26236 5.26834 5.32206 5.35104 5.36100 5.45121 5.63811 5.65437 5.87055 6.30566 6.37410 6.47618 6.82352 7.22628 7.41423 8.93312 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.002334 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.954979 B =11992.593593 C =12636.834947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.134 4.134 4 C -0.177 4.177 5 O -0.365 6.365 6 C 0.660 3.340 7 O -0.597 6.597 8 N -0.607 5.607 9 C 0.131 3.869 10 C -0.084 4.084 11 H 0.124 0.876 12 C -0.097 4.097 13 C 0.043 3.957 14 H 0.025 0.975 15 N -0.472 5.472 16 C 0.017 3.983 17 C 0.018 3.982 18 C -0.531 4.531 19 H 0.055 0.945 20 C 0.014 3.986 21 N -0.920 5.920 22 Si 0.954 3.046 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.282 1.282 26 C 0.026 3.974 27 C -0.104 4.104 28 C -0.085 4.085 29 H 0.129 0.871 30 C 0.113 3.887 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.026 0.974 47 H 0.262 0.738 48 H 0.039 0.961 49 H 0.051 0.949 50 H 0.053 0.947 51 H 0.067 0.933 52 H 0.073 0.927 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.296 11.575 -21.772 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.191 4.191 4 C -0.234 4.234 5 O -0.280 6.280 6 C 0.416 3.584 7 O -0.489 6.489 8 N -0.348 5.348 9 C 0.010 3.990 10 C -0.103 4.103 11 H 0.142 0.858 12 C -0.135 4.135 13 C -0.066 4.066 14 H 0.043 0.957 15 N -0.195 5.195 16 C -0.112 4.112 17 C -0.001 4.001 18 C -0.569 4.569 19 H 0.074 0.926 20 C -0.185 4.185 21 N -0.559 5.559 22 Si 0.779 3.221 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.207 1.207 26 C -0.103 4.103 27 C -0.142 4.142 28 C -0.104 4.104 29 H 0.147 0.853 30 C -0.008 4.008 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.074 0.926 46 H 0.044 0.956 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.086 0.914 52 H 0.091 0.909 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.685 11.783 -21.823 27.416 hybrid contribution -2.346 -0.387 0.351 2.404 sum 9.339 11.396 -21.472 26.041 Atomic orbital electron populations 1.22480 0.94401 1.03433 1.03472 1.22440 0.94343 0.92895 0.81658 1.21874 1.02546 0.90447 1.04248 1.22451 1.01705 1.02056 0.97224 1.86324 1.71493 1.22753 1.47428 1.17722 0.78605 0.80848 0.81269 1.90884 1.42633 1.71160 1.44177 1.47817 1.53095 1.12834 1.21050 1.22186 0.98499 0.78827 0.99507 1.23026 0.97550 0.94993 0.94751 0.85832 1.22123 0.99506 0.96941 0.94913 1.22844 0.97336 0.96091 0.90366 0.95667 1.68611 1.38969 1.03933 1.07999 1.23822 0.97213 0.92108 0.98059 1.20314 0.94679 0.92263 0.92820 1.21471 0.99433 1.29909 1.06129 0.92645 1.25795 1.02049 0.95156 0.95496 1.70088 1.38574 1.36183 1.11049 0.85574 0.80070 0.78217 0.78221 1.19024 1.20429 1.20749 1.23733 0.91124 0.99822 0.95646 1.22158 0.97355 0.94869 0.99864 1.23008 1.00210 0.93224 0.93918 0.85340 1.22626 0.94745 0.96627 0.86813 0.92407 0.88879 0.92324 0.90934 0.87862 0.91492 0.92209 0.89004 0.91721 0.90377 0.92465 0.89526 0.91215 0.90059 0.92598 0.95575 0.92898 0.94224 0.93076 0.92848 0.91377 0.90898 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.47 8.37 71.98 0.60 -2.87 16 2 C 0.12 2.25 1.13 -10.80 -0.01 2.24 16 3 C -0.13 -1.55 8.85 71.98 0.64 -0.91 16 4 C -0.18 -3.07 8.37 71.98 0.60 -2.47 16 5 O -0.37 -8.56 9.49 -55.48 -0.53 -9.09 16 6 C 0.66 17.84 7.93 129.79 1.03 18.87 16 7 O -0.60 -18.88 12.13 19.81 0.24 -18.64 16 8 N -0.61 -14.34 3.37 -938.04 -3.16 -17.50 16 9 C 0.13 2.98 5.96 86.66 0.52 3.50 16 10 C -0.08 -1.55 4.24 -8.77 -0.04 -1.59 16 11 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 12 C -0.10 -2.24 5.11 31.41 0.16 -2.08 16 13 C 0.04 1.30 1.57 45.56 0.07 1.37 16 14 H 0.03 0.87 7.30 -2.38 -0.02 0.86 16 15 N -0.47 -17.79 5.81 -878.25 -5.10 -22.89 16 16 C 0.02 0.66 6.82 86.41 0.59 1.25 16 17 C 0.02 0.92 3.60 -10.89 -0.04 0.88 16 18 C -0.53 -29.14 8.77 25.60 0.22 -28.92 16 19 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 20 C 0.01 0.80 5.46 84.66 0.46 1.26 16 21 N -0.92 -53.89 13.29 21.45 0.28 -53.60 16 22 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 C 0.03 1.20 7.37 86.37 0.64 1.83 16 27 C -0.10 -2.70 5.42 31.26 0.17 -2.53 16 28 C -0.08 -1.56 4.10 -8.81 -0.04 -1.60 16 29 H 0.13 1.89 8.14 -2.39 -0.02 1.88 16 30 C 0.11 2.09 6.30 86.33 0.54 2.63 16 31 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.50 5.88 -2.39 -0.01 1.48 16 34 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 1.41 5.88 -2.38 -0.01 1.39 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.79 8.04 -2.39 -0.02 1.77 16 41 H 0.06 1.51 6.77 -2.39 -0.02 1.49 16 42 H 0.09 2.01 8.05 -2.39 -0.02 1.99 16 43 H 0.07 1.58 8.12 -2.39 -0.02 1.56 16 44 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 45 H 0.06 2.21 7.87 -2.38 -0.02 2.19 16 46 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 48 H 0.04 1.90 7.61 -2.38 -0.02 1.88 16 49 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 50 H 0.05 1.45 7.38 -2.38 -0.02 1.43 16 51 H 0.07 1.93 7.91 -2.39 -0.02 1.91 16 52 H 0.07 1.40 7.58 -2.39 -0.02 1.38 16 53 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -66.21 404.70 0.74 -65.47 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.86 Total: 19.79 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 6.12 Total: -9.13 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -7.98 Total: -94.00 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.29 Total: -27.73 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -66.21 0.74 -65.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254899439.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.577 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds