Wall clock time and date at job start Tue Mar 31 2020 19:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00190 * 2 1 4 4 C 1.50701 * 120.00043 * 179.97438 * 2 1 3 5 5 H 1.09000 * 110.42260 * 346.55005 * 4 2 1 6 6 O 1.44426 * 110.37507 * 224.24148 * 4 2 1 7 7 C 1.44420 * 105.27731 * 200.65827 * 6 4 2 8 8 C 1.54479 * 104.80637 * 40.50828 * 7 6 4 9 9 C 1.54481 * 110.37341 * 108.85877 * 4 2 1 10 10 H 1.08997 * 110.62569 * 261.50900 * 9 4 2 11 11 C 1.50698 * 110.50814 * 24.16540 * 9 4 2 12 12 O 1.21289 * 119.99867 * 82.15306 * 11 9 4 13 13 N 1.34773 * 120.00054 * 262.14648 * 11 9 4 14 14 C 1.46923 * 120.63026 * 355.22000 * 13 11 9 15 15 C 1.53195 * 108.77462 * 126.41187 * 14 13 11 16 16 C 1.53036 * 109.34094 * 54.61967 * 15 14 13 17 17 C 1.53037 * 109.53828 * 298.68222 * 16 15 14 18 18 H 1.08991 * 109.50074 * 301.34859 * 17 16 15 19 19 C 1.53002 * 109.49613 * 181.27777 * 17 16 15 20 20 N 1.46507 * 109.46640 * 65.06933 * 19 17 16 21 21 C 1.46500 * 119.99814 * 89.99678 * 20 19 17 22 22 C 1.36927 * 119.99909 * 269.99641 * 20 19 17 23 23 H 1.08001 * 120.00561 * 334.80112 * 22 20 19 24 24 C 1.38815 * 120.00274 * 154.80280 * 22 20 19 25 25 N 1.31621 * 119.99600 * 4.28892 * 24 22 20 26 26 Si 1.86794 * 120.00485 * 184.28526 * 24 22 20 27 27 H 1.48505 * 109.47049 * 59.99744 * 26 24 22 28 28 H 1.48499 * 109.47559 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47132 * 300.00164 * 26 24 22 30 30 C 1.46922 * 120.63309 * 175.24144 * 13 11 9 31 31 H 1.07992 * 119.99801 * 0.02562 * 1 2 3 32 32 H 1.07998 * 119.99846 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46728 * 274.98205 * 3 2 1 34 34 H 1.08996 * 109.47227 * 34.97804 * 3 2 1 35 35 H 1.08998 * 109.47775 * 154.98147 * 3 2 1 36 36 H 1.08998 * 110.37130 * 281.67550 * 7 6 4 37 37 H 1.09005 * 110.37305 * 159.34466 * 7 6 4 38 38 H 1.08993 * 110.51535 * 217.38100 * 8 7 6 39 39 H 1.08997 * 110.51151 * 94.66376 * 8 7 6 40 40 H 1.09001 * 109.59159 * 246.19758 * 14 13 11 41 41 H 1.09006 * 109.58897 * 6.48456 * 14 13 11 42 42 H 1.09005 * 109.49814 * 174.58530 * 15 14 13 43 43 H 1.09003 * 109.50025 * 294.68236 * 15 14 13 44 44 H 1.08998 * 109.48917 * 178.64615 * 16 15 14 45 45 H 1.09001 * 109.43069 * 58.69000 * 16 15 14 46 46 H 1.08993 * 109.47588 * 305.06980 * 19 17 16 47 47 H 1.09000 * 109.46806 * 185.06466 * 19 17 16 48 48 H 1.08996 * 109.47413 * 264.78285 * 21 20 19 49 49 H 1.09005 * 109.46996 * 144.78018 * 21 20 19 50 50 H 1.09000 * 109.47345 * 24.78638 * 21 20 19 51 51 H 0.97000 * 119.99912 * 180.02562 * 25 24 22 52 52 H 1.08998 * 109.58986 * 113.79718 * 30 13 11 53 53 H 1.09007 * 109.58671 * 353.37470 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3933 -2.1311 0.2385 6 8 3.1549 -1.2552 0.9452 7 6 4.0689 -2.2917 0.5257 8 6 4.0875 -2.2015 -1.0163 9 6 2.7378 -1.5374 -1.3697 10 1 2.1345 -2.2034 -1.9866 11 6 2.9637 -0.2256 -2.0762 12 8 3.9320 0.4517 -1.8026 13 7 2.0898 0.1950 -3.0120 14 6 0.9705 -0.6603 -3.4293 15 6 -0.3341 0.1295 -3.2847 16 6 -0.2213 1.4416 -4.0642 17 6 0.9197 2.2829 -3.4878 18 1 0.7293 2.4803 -2.4329 19 6 1.0111 3.6081 -4.2470 20 7 -0.2039 4.3915 -4.0098 21 6 -0.2656 5.3240 -2.8816 22 6 -1.2818 4.2522 -4.8426 23 1 -1.1392 3.9155 -5.8589 24 6 -2.5580 4.5437 -4.3809 25 7 -2.7239 5.0341 -3.1707 26 14 -4.0400 4.2401 -5.4768 27 1 -4.1069 2.7995 -5.8309 28 1 -5.2776 4.6311 -4.7553 29 1 -3.9133 5.0490 -6.7158 30 6 2.2386 1.5174 -3.6347 31 1 -0.5399 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 2.1679 1.6643 -1.0239 34 1 1.5161 2.0407 0.5891 35 1 3.0517 1.1542 0.4346 36 1 3.7063 -3.2690 0.8443 37 1 5.0645 -2.1057 0.9288 38 1 4.1503 -3.1966 -1.4565 39 1 4.9180 -1.5809 -1.3526 40 1 1.1049 -0.9565 -4.4697 41 1 0.9343 -1.5485 -2.7983 42 1 -1.1616 -0.4591 -3.6811 43 1 -0.5132 0.3467 -2.2317 44 1 -1.1571 1.9946 -3.9828 45 1 -0.0184 1.2241 -5.1128 46 1 1.1128 3.4094 -5.3139 47 1 1.8785 4.1680 -3.8974 48 1 -0.7329 4.8319 -2.0286 49 1 -0.8532 6.1976 -3.1639 50 1 0.7435 5.6363 -2.6128 51 1 -3.6157 5.2375 -2.8479 52 1 2.4766 1.3990 -4.6918 53 1 3.0377 2.0676 -3.1376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265397083.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:06 Heat of formation + Delta-G solvation = -48.118979 kcal Electronic energy + Delta-G solvation = -32407.906008 eV Core-core repulsion = 28473.313205 eV Total energy + Delta-G solvation = -3934.592803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.04907 -39.98444 -38.59764 -37.14424 -36.06986 -34.41662 -33.22703 -32.94920 -31.88210 -29.74567 -28.31902 -27.98298 -27.32704 -26.37403 -24.52005 -23.77392 -23.04019 -22.37884 -20.83452 -20.46008 -19.20747 -18.64140 -18.40929 -17.21391 -17.03649 -16.92299 -16.65386 -16.18369 -15.95717 -15.64192 -15.38912 -15.02460 -14.88383 -14.86151 -14.67626 -14.30850 -14.13781 -13.95070 -13.78735 -13.49641 -13.25442 -13.19571 -13.06590 -12.77501 -12.65495 -12.57550 -12.55345 -12.31798 -12.20255 -12.11003 -12.03465 -11.93050 -11.84488 -11.81774 -11.61921 -11.42234 -11.09414 -10.81548 -10.54896 -10.50681 -9.98834 -9.51104 -8.69224 -7.77127 -5.23518 1.12578 1.48985 1.49378 1.56057 1.63080 2.06508 2.54236 3.03149 3.34922 3.37375 3.55446 3.72391 3.75830 3.87845 3.96456 4.03977 4.08970 4.19045 4.22628 4.27599 4.35588 4.37928 4.49041 4.55048 4.59058 4.66952 4.67770 4.74429 4.77178 4.83495 4.85757 4.87400 4.90160 4.93973 4.95376 5.00396 5.02544 5.09779 5.15814 5.31225 5.36885 5.42983 5.57466 5.61736 5.66594 5.70781 5.74247 5.77746 5.80357 5.95136 6.39664 6.52801 7.22101 7.25858 7.92358 8.39502 9.26752 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.003469 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.936024 B = 8069.795819 C = 8127.588077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C -0.113 4.113 4 C 0.131 3.869 5 H 0.115 0.885 6 O -0.390 6.390 7 C 0.042 3.958 8 C -0.137 4.137 9 C -0.141 4.141 10 H 0.139 0.861 11 C 0.528 3.472 12 O -0.577 6.577 13 N -0.603 5.603 14 C 0.108 3.892 15 C -0.135 4.135 16 C -0.100 4.100 17 C -0.098 4.098 18 H 0.036 0.964 19 C 0.155 3.845 20 N -0.615 5.615 21 C 0.185 3.815 22 C -0.243 4.243 23 H 0.071 0.929 24 C -0.046 4.046 25 N -0.940 5.940 26 Si 0.958 3.042 27 H -0.272 1.272 28 H -0.300 1.300 29 H -0.281 1.281 30 C 0.126 3.874 31 H 0.085 0.915 32 H 0.130 0.870 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.041 0.959 48 H -0.004 1.004 49 H 0.026 0.974 50 H 0.011 0.989 51 H 0.244 0.756 52 H 0.077 0.923 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.733 -20.902 2.874 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.169 4.169 4 C 0.073 3.927 5 H 0.132 0.868 6 O -0.309 6.309 7 C -0.034 4.034 8 C -0.175 4.175 9 C -0.163 4.163 10 H 0.157 0.843 11 C 0.317 3.683 12 O -0.457 6.457 13 N -0.334 5.334 14 C -0.013 4.013 15 C -0.173 4.173 16 C -0.138 4.138 17 C -0.120 4.120 18 H 0.054 0.946 19 C 0.029 3.971 20 N -0.339 5.339 21 C 0.040 3.960 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.241 4.241 25 N -0.587 5.587 26 Si 0.787 3.213 27 H -0.197 1.197 28 H -0.226 1.226 29 H -0.207 1.207 30 C 0.003 3.997 31 H 0.103 0.897 32 H 0.148 0.852 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.135 0.865 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.014 0.986 49 H 0.044 0.956 50 H 0.029 0.971 51 H 0.054 0.946 52 H 0.095 0.905 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.129 -20.325 3.255 22.941 hybrid contribution -1.125 0.815 -0.426 1.453 sum 9.004 -19.509 2.829 21.672 Atomic orbital electron populations 1.23752 0.94474 1.02867 0.98873 1.21459 0.95201 0.94696 1.02248 1.20857 0.99670 0.94897 1.01512 1.21979 0.89060 0.95477 0.86148 0.86796 1.89191 1.33797 1.56849 1.51110 1.23612 0.94552 0.91816 0.93408 1.22976 0.95186 1.02392 0.96958 1.22971 1.00413 0.95034 0.97836 0.84300 1.20549 0.81505 0.87980 0.78246 1.90664 1.31297 1.58515 1.65261 1.48142 1.28212 1.17423 1.39651 1.22007 0.84361 0.93145 1.01812 1.22007 0.97723 0.96470 1.01102 1.21346 0.98743 0.95266 0.98444 1.21883 0.94554 0.96427 0.99141 0.94579 1.20928 0.87902 0.90423 0.97880 1.44056 1.13269 1.44814 1.31714 1.20519 0.93856 0.92355 0.89277 1.19324 0.85482 1.39520 0.92977 0.91157 1.25767 0.99937 1.01201 0.97183 1.70270 1.20797 1.49064 1.18564 0.85483 0.79310 0.78522 0.78029 1.19745 1.22620 1.20725 1.21479 0.97162 0.83174 0.97905 0.89665 0.85229 0.92162 0.93570 0.92769 0.89221 0.88840 0.86507 0.91539 0.89661 0.87339 0.89721 0.92084 0.93121 0.92494 0.92958 0.94019 0.98609 0.95550 0.97064 0.94635 0.90510 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 11.48 67.78 0.78 -3.10 16 2 C -0.14 -3.53 4.45 -16.49 -0.07 -3.60 16 3 C -0.11 -3.71 8.10 71.24 0.58 -3.13 16 4 C 0.13 2.69 3.44 30.35 0.10 2.79 16 5 H 0.11 1.61 7.90 -2.39 -0.02 1.59 16 6 O -0.39 -9.60 10.54 -148.98 -1.57 -11.17 16 7 C 0.04 0.68 7.63 72.48 0.55 1.24 16 8 C -0.14 -2.18 6.59 31.61 0.21 -1.97 16 9 C -0.14 -2.59 2.83 -10.52 -0.03 -2.62 16 10 H 0.14 1.54 5.79 -2.39 -0.01 1.53 16 11 C 0.53 14.05 3.77 87.66 0.33 14.38 16 12 O -0.58 -20.10 13.43 -3.06 -0.04 -20.14 16 13 N -0.60 -15.25 2.68 -818.89 -2.19 -17.44 16 14 C 0.11 2.07 6.30 86.36 0.54 2.62 16 15 C -0.14 -3.41 6.08 30.67 0.19 -3.22 16 16 C -0.10 -3.40 4.77 30.62 0.15 -3.26 16 17 C -0.10 -3.47 2.51 -10.71 -0.03 -3.50 16 18 H 0.04 1.50 7.33 -2.39 -0.02 1.48 16 19 C 0.16 6.21 5.22 86.38 0.45 6.66 16 20 N -0.62 -30.50 2.81 -726.93 -2.04 -32.54 16 21 C 0.19 9.54 8.99 127.77 1.15 10.69 16 22 C -0.24 -12.81 7.58 84.04 0.64 -12.17 16 23 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 24 C -0.05 -2.53 5.38 84.86 0.46 -2.07 16 25 N -0.94 -54.88 10.11 21.65 0.22 -54.66 16 26 Si 0.96 43.90 29.56 68.60 2.03 45.93 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 29 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 30 C 0.13 3.77 4.86 86.36 0.42 4.19 16 31 H 0.08 2.44 8.05 -2.91 -0.02 2.42 16 32 H 0.13 2.21 7.91 -2.91 -0.02 2.19 16 33 H 0.06 2.18 4.16 -2.38 -0.01 2.17 16 34 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 35 H 0.05 1.93 7.06 -2.39 -0.02 1.91 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.43 6.99 -2.39 -0.02 1.42 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 41 H 0.11 1.40 5.29 -2.38 -0.01 1.38 16 42 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.06 1.70 5.47 -2.39 -0.01 1.68 16 44 H 0.05 2.23 6.26 -2.39 -0.01 2.21 16 45 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.99 8.04 -2.39 -0.02 1.97 16 47 H 0.04 1.60 7.86 -2.39 -0.02 1.58 16 48 H 0.00 -0.25 7.46 -2.39 -0.02 -0.27 16 49 H 0.03 1.46 6.99 -2.38 -0.02 1.45 16 50 H 0.01 0.51 7.83 -2.39 -0.02 0.49 16 51 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 52 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 53 H 0.07 2.25 6.92 -2.38 -0.02 2.23 16 Total: -1.00 -70.05 388.96 3.70 -66.35 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.88 Total: 19.75 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 6.41 Total: 3.92 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -4.01 Total: -104.64 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.61 Total: -31.31 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.05 3.70 -66.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265397083.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.233 kcal (2) G-P(sol) polarization free energy of solvation -70.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds