Wall clock time and date at job start Tue Mar 31 2020 20:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99790 * 2 1 4 4 C 1.52998 * 109.47041 * 119.99741 * 3 2 1 5 5 C 1.52994 * 109.47140 * 239.99830 * 3 2 1 6 6 C 1.53002 * 109.47150 * 300.00294 * 5 3 2 7 7 O 1.42901 * 109.47536 * 180.02562 * 6 5 3 8 8 C 1.42893 * 114.00249 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46850 * 359.97438 * 3 2 1 10 10 O 1.21290 * 119.99484 * 239.99568 * 9 3 2 11 11 N 1.34773 * 120.00293 * 60.00565 * 9 3 2 12 12 C 1.46504 * 120.00042 * 180.02562 * 11 9 3 13 13 C 1.53153 * 109.39416 * 275.19713 * 12 11 9 14 14 C 1.54249 * 108.84181 * 185.97655 * 13 12 11 15 15 H 1.08994 * 112.32732 * 187.68886 * 14 13 12 16 16 C 1.54608 * 107.85398 * 312.47051 * 14 13 12 17 17 C 1.53794 * 104.84934 * 88.47675 * 16 14 13 18 18 C 1.54608 * 104.85214 * 359.97438 * 17 16 14 19 19 H 1.09001 * 112.69449 * 146.96358 * 18 17 16 20 20 C 1.53145 * 109.43308 * 154.99557 * 12 11 9 21 21 N 1.48290 * 106.99373 * 64.12653 * 14 13 12 22 22 C 1.36943 * 128.20734 * 107.52902 * 21 14 13 23 23 H 1.07999 * 119.99583 * 164.46313 * 22 21 14 24 24 C 1.38805 * 120.00222 * 344.46021 * 22 21 14 25 25 N 1.31629 * 119.99820 * 350.72393 * 24 22 21 26 26 Si 1.86803 * 120.00184 * 170.71962 * 24 22 21 27 27 H 1.48498 * 109.47130 * 180.02562 * 26 24 22 28 28 H 1.48495 * 109.46808 * 300.00219 * 26 24 22 29 29 H 1.48503 * 109.46766 * 60.00201 * 26 24 22 30 30 H 1.08004 * 119.99934 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.00260 * 0.02562 * 1 2 3 32 32 H 1.07994 * 120.00260 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47297 * 300.00192 * 4 3 2 34 34 H 1.09005 * 109.47158 * 60.00079 * 4 3 2 35 35 H 1.08997 * 109.46836 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.47253 * 59.99589 * 5 3 2 37 37 H 1.08997 * 109.47677 * 180.02562 * 5 3 2 38 38 H 1.09006 * 109.46860 * 299.99844 * 6 5 3 39 39 H 1.08997 * 109.47577 * 59.99723 * 6 5 3 40 40 H 1.08998 * 109.47139 * 179.97438 * 8 7 6 41 41 H 1.09000 * 109.47105 * 299.99483 * 8 7 6 42 42 H 1.08996 * 109.47236 * 59.99797 * 8 7 6 43 43 H 0.97000 * 120.00255 * 359.97438 * 11 9 3 44 44 H 1.08999 * 109.43547 * 35.08149 * 12 11 9 45 45 H 1.09000 * 109.56651 * 305.87947 * 13 12 11 46 46 H 1.08998 * 109.57241 * 66.24114 * 13 12 11 47 47 H 1.09005 * 110.38076 * 207.17756 * 16 14 13 48 48 H 1.08997 * 110.38290 * 329.42992 * 16 14 13 49 49 H 1.09005 * 110.43080 * 241.09700 * 17 16 14 50 50 H 1.08994 * 110.24351 * 118.80100 * 17 16 14 51 51 H 1.08994 * 109.57202 * 54.09393 * 20 12 11 52 52 H 1.08995 * 109.66608 * 293.78494 * 20 12 11 53 53 H 0.97005 * 119.99626 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9430 1.3862 1.2493 5 6 2.9431 1.3862 -1.2492 6 6 3.9373 0.2233 -1.2492 7 8 4.7594 0.2993 -2.4156 8 6 5.7283 -0.7465 -2.5130 9 6 1.0841 2.4505 -0.0006 10 8 1.0896 3.2526 -0.9105 11 7 0.2023 2.5838 1.0098 12 6 -0.7502 3.6969 1.0089 13 6 -0.0846 4.9363 1.6143 14 6 -1.1395 6.0540 1.7462 15 1 -0.6997 7.0051 2.0460 16 6 -1.9026 6.1462 0.4047 17 6 -3.0645 5.1482 0.5428 18 6 -2.8998 4.5411 1.9552 19 1 -3.8540 4.2947 2.4209 20 6 -1.9806 3.3154 1.8370 21 7 -2.1574 5.5773 2.7134 22 6 -2.3660 5.9981 3.9998 23 1 -3.2876 5.7513 4.5059 24 6 -1.3929 6.7417 4.6533 25 7 -0.2023 6.8881 4.1115 26 14 -1.7732 7.5346 6.3013 27 1 -0.5763 8.2682 6.7856 28 1 -2.9048 8.4833 6.1447 29 1 -2.1409 6.4832 7.2834 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9352 -0.0004 32 1 1.8500 -0.9352 0.0004 33 1 2.3163 1.3285 2.1393 34 1 3.6514 0.5578 1.2493 35 1 3.4876 2.3304 1.2495 36 1 2.3165 1.3284 -2.1392 37 1 3.4884 2.3300 -1.2490 38 1 4.5640 0.2811 -0.3591 39 1 3.3924 -0.7207 -1.2491 40 1 6.3112 -0.6179 -3.4250 41 1 6.3918 -0.7086 -1.6490 42 1 5.2208 -1.7107 -2.5394 43 1 0.1977 1.9422 1.7374 44 1 -1.0549 3.9127 -0.0152 45 1 0.3155 4.6918 2.5983 46 1 0.7224 5.2722 0.9632 47 1 -2.2877 7.1550 0.2556 48 1 -1.2518 5.8630 -0.4225 49 1 -2.9892 4.3692 -0.2160 50 1 -4.0194 5.6674 0.4615 51 1 -1.6672 2.9968 2.8311 52 1 -2.5164 2.5035 1.3453 53 1 0.4779 7.4074 4.5684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266650417.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:47 Heat of formation + Delta-G solvation = -52.303770 kcal Electronic energy + Delta-G solvation = -31208.477350 eV Core-core repulsion = 27273.703081 eV Total energy + Delta-G solvation = -3934.774269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.88865 -40.63814 -38.91880 -37.09524 -36.03118 -34.52734 -32.69213 -31.90354 -31.26945 -30.98873 -29.84361 -27.23011 -26.66792 -25.80544 -24.91562 -23.69493 -22.82534 -21.98724 -21.00985 -20.56707 -19.71913 -18.59131 -17.83734 -17.73859 -17.10343 -17.01882 -16.64648 -16.51835 -15.94482 -15.76106 -15.57393 -14.77021 -14.75419 -14.63682 -14.50061 -14.47810 -14.11761 -13.78188 -13.70125 -13.46555 -13.14983 -13.14421 -13.02956 -12.82715 -12.79766 -12.59076 -12.54957 -12.43096 -12.31412 -12.25806 -11.98278 -11.91438 -11.63964 -11.40112 -11.32192 -11.13633 -10.96770 -10.79046 -10.54701 -10.53928 -10.35640 -9.82636 -8.75016 -7.80272 -5.15752 1.31336 1.47911 1.50467 1.56098 1.63971 2.16381 2.52572 2.89291 3.37179 3.49961 3.61000 3.68843 3.93061 3.94910 4.10909 4.17147 4.22703 4.26659 4.26909 4.35808 4.39847 4.42388 4.47808 4.51090 4.57409 4.58100 4.58951 4.74474 4.76968 4.81884 4.88369 4.88823 4.95673 4.99830 5.04848 5.12452 5.14847 5.15784 5.19733 5.26263 5.28169 5.33007 5.56026 5.57245 5.62595 5.66734 5.76229 5.77782 5.86083 6.27622 6.29190 6.59681 7.10943 7.27363 7.79015 8.59874 9.30351 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.002886 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.240157 B = 9700.482261 C =10224.743213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.040 4.040 4 C -0.141 4.141 5 C -0.087 4.087 6 C 0.065 3.935 7 O -0.423 6.423 8 C 0.025 3.975 9 C 0.520 3.480 10 O -0.581 6.581 11 N -0.710 5.710 12 C 0.158 3.842 13 C -0.102 4.102 14 C 0.175 3.825 15 H 0.064 0.936 16 C -0.137 4.137 17 C -0.119 4.119 18 C 0.143 3.857 19 H 0.081 0.919 20 C -0.122 4.122 21 N -0.603 5.603 22 C -0.229 4.229 23 H 0.079 0.921 24 C -0.059 4.059 25 N -0.936 5.936 26 Si 0.969 3.031 27 H -0.300 1.300 28 H -0.283 1.283 29 H -0.277 1.277 30 H 0.126 0.874 31 H 0.091 0.909 32 H 0.151 0.849 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.407 0.593 44 H 0.078 0.922 45 H 0.038 0.962 46 H 0.020 0.980 47 H 0.050 0.950 48 H 0.061 0.939 49 H 0.080 0.920 50 H 0.066 0.934 51 H 0.052 0.948 52 H 0.086 0.914 53 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.034 -19.604 -8.841 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.165 4.165 3 C -0.043 4.043 4 C -0.198 4.198 5 C -0.125 4.125 6 C -0.011 4.011 7 O -0.343 6.343 8 C -0.071 4.071 9 C 0.307 3.693 10 O -0.461 6.461 11 N -0.361 5.361 12 C 0.054 3.946 13 C -0.142 4.142 14 C 0.068 3.932 15 H 0.082 0.918 16 C -0.176 4.176 17 C -0.158 4.158 18 C 0.036 3.964 19 H 0.099 0.901 20 C -0.162 4.162 21 N -0.325 5.325 22 C -0.358 4.358 23 H 0.097 0.903 24 C -0.253 4.253 25 N -0.584 5.584 26 Si 0.798 3.202 27 H -0.227 1.227 28 H -0.209 1.209 29 H -0.203 1.203 30 H 0.144 0.856 31 H 0.109 0.891 32 H 0.168 0.832 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.244 0.756 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.039 0.961 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.085 0.915 51 H 0.071 0.929 52 H 0.105 0.895 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.093 -18.756 -9.386 21.582 hybrid contribution 0.298 0.730 1.469 1.667 sum 5.391 -18.026 -7.917 20.413 Atomic orbital electron populations 1.24471 0.96416 1.03491 0.99106 1.22809 0.95790 0.96365 1.01572 1.19854 0.94509 0.92000 0.97985 1.21946 0.99718 1.03434 0.94746 1.21158 0.96405 0.98766 0.96162 1.22679 0.92322 0.98118 0.87997 1.87847 1.50216 1.51683 1.44580 1.22929 0.91261 0.89988 1.02885 1.20912 0.81038 0.86138 0.81186 1.90676 1.71700 1.45899 1.37831 1.46353 1.35297 1.29562 1.24847 1.21009 0.88564 0.85396 0.99623 1.22204 0.97556 0.96470 0.98010 1.21451 0.89050 0.95920 0.86814 0.91778 1.22589 0.98044 0.99137 0.97848 1.22478 0.97886 0.98303 0.97127 1.21787 0.94515 0.88426 0.91715 0.90117 1.22331 0.95624 0.99125 0.99102 1.45358 1.36697 1.40842 1.09576 1.19262 0.99673 1.28187 0.88723 0.90341 1.25550 0.95223 1.03212 1.01350 1.70093 1.03540 1.44713 1.40066 0.85299 0.76199 0.78366 0.80288 1.22694 1.20924 1.20270 0.85609 0.89080 0.83181 0.91290 0.88178 0.93204 0.92261 0.92674 0.91363 0.90964 0.88962 0.92987 0.92710 0.75642 0.90389 0.94311 0.96105 0.93154 0.92015 0.90105 0.91527 0.92916 0.89523 0.94752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.48 13.17 67.78 0.89 -2.59 16 2 C -0.15 -2.45 7.99 25.65 0.21 -2.24 16 3 C -0.04 -0.90 0.62 -53.67 -0.03 -0.93 16 4 C -0.14 -2.70 8.00 71.98 0.58 -2.13 16 5 C -0.09 -2.10 3.92 30.59 0.12 -1.98 16 6 C 0.06 1.14 5.33 71.98 0.38 1.52 16 7 O -0.42 -9.05 10.70 -148.98 -1.59 -10.64 16 8 C 0.03 0.33 11.01 113.37 1.25 1.57 16 9 C 0.52 16.31 5.30 87.66 0.46 16.77 16 10 O -0.58 -23.43 15.64 -3.06 -0.05 -23.48 16 11 N -0.71 -21.30 3.24 -442.05 -1.43 -22.74 16 12 C 0.16 5.63 2.10 45.09 0.09 5.72 16 13 C -0.10 -4.59 5.13 31.07 0.16 -4.44 16 14 C 0.18 8.43 3.18 45.62 0.15 8.57 16 15 H 0.06 3.66 6.34 -2.39 -0.02 3.65 16 16 C -0.14 -5.45 5.95 31.41 0.19 -5.26 16 17 C -0.12 -4.01 5.96 31.41 0.19 -3.83 16 18 C 0.14 5.37 4.32 45.41 0.20 5.56 16 19 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 20 C -0.12 -4.01 5.09 30.87 0.16 -3.85 16 21 N -0.60 -29.19 2.81 -636.24 -1.79 -30.98 16 22 C -0.23 -12.29 10.38 84.03 0.87 -11.42 16 23 H 0.08 4.03 7.85 -2.91 -0.02 4.00 16 24 C -0.06 -3.28 5.42 84.86 0.46 -2.82 16 25 N -0.94 -54.95 10.61 21.65 0.23 -54.72 16 26 Si 0.97 45.08 29.56 68.60 2.03 47.11 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 28 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 29 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 30 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.09 2.04 5.18 -2.91 -0.02 2.03 16 32 H 0.15 1.57 7.00 -2.91 -0.02 1.55 16 33 H 0.07 1.28 7.57 -2.39 -0.02 1.26 16 34 H 0.10 1.28 6.43 -2.38 -0.02 1.26 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 37 H 0.05 1.59 8.10 -2.39 -0.02 1.58 16 38 H 0.07 0.98 6.43 -2.38 -0.02 0.96 16 39 H 0.07 0.95 6.62 -2.39 -0.02 0.94 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.41 10.35 7.36 -92.71 -0.68 9.66 16 44 H 0.08 2.91 4.97 -2.39 -0.01 2.89 16 45 H 0.04 1.99 8.01 -2.39 -0.02 1.97 16 46 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 48 H 0.06 2.38 7.06 -2.39 -0.02 2.36 16 49 H 0.08 2.34 7.04 -2.38 -0.02 2.32 16 50 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 52 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 53 H 0.24 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -70.40 398.59 3.91 -66.49 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.21 Total: 30.72 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 6.31 Total: -1.76 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -3.00 Total: -108.44 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.64 Total: -34.12 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -70.40 3.91 -66.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266650417.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.183 kcal (2) G-P(sol) polarization free energy of solvation -70.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds