Wall clock time and date at job start Tue Mar 31 2020 20:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46760 * 2 1 4 4 C 1.53000 * 109.47538 * 239.99830 * 2 1 3 5 5 N 1.46503 * 109.47042 * 119.99308 * 2 1 3 6 6 C 1.34778 * 119.99347 * 60.00983 * 5 2 1 7 7 O 1.21277 * 120.00374 * 359.97438 * 6 5 2 8 8 C 1.50697 * 119.99428 * 179.97438 * 6 5 2 9 9 H 1.09002 * 110.10881 * 333.77823 * 8 6 5 10 10 C 1.54605 * 110.12661 * 212.07493 * 8 6 5 11 11 C 1.55378 * 104.27524 * 264.29000 * 10 8 6 12 12 C 1.55181 * 102.73671 * 322.75561 * 11 10 8 13 13 C 1.52672 * 110.13098 * 95.41440 * 8 6 5 14 14 C 1.53900 * 111.53713 * 241.34711 * 13 8 6 15 15 C 1.54544 * 102.81438 * 154.00118 * 14 13 8 16 16 N 1.47125 * 107.32261 * 338.93655 * 15 14 13 17 17 C 1.34771 * 125.61690 * 179.02215 * 16 15 14 18 18 O 1.21277 * 120.00237 * 180.02562 * 17 16 15 19 19 C 1.50700 * 120.00195 * 0.02562 * 17 16 15 20 20 C 1.50697 * 109.47363 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00204 * 359.97438 * 20 19 17 22 22 C 1.37874 * 120.00042 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99952 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00114 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46978 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47149 * 119.99828 * 24 22 20 27 27 H 1.48493 * 109.47194 * 239.99632 * 24 22 20 28 28 C 1.47667 * 108.76898 * 359.04087 * 16 15 14 29 29 H 1.08994 * 109.47650 * 299.99965 * 1 2 3 30 30 H 1.08999 * 109.46855 * 60.00719 * 1 2 3 31 31 H 1.09005 * 109.46901 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47137 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46850 * 299.99284 * 3 2 1 34 34 H 1.09000 * 109.47412 * 59.99666 * 3 2 1 35 35 H 1.08997 * 109.47194 * 299.99710 * 4 2 1 36 36 H 1.09000 * 109.47115 * 60.00223 * 4 2 1 37 37 H 1.08999 * 109.47188 * 179.97438 * 4 2 1 38 38 H 0.97001 * 120.00239 * 240.00470 * 5 2 1 39 39 H 1.08997 * 110.47790 * 22.97920 * 10 8 6 40 40 H 1.09001 * 110.47880 * 145.46789 * 10 8 6 41 41 H 1.09000 * 110.88051 * 204.42815 * 11 10 8 42 42 H 1.09004 * 110.73992 * 81.01687 * 11 10 8 43 43 H 1.08996 * 110.54799 * 278.20711 * 12 11 10 44 44 H 1.08995 * 110.54632 * 155.54176 * 12 11 10 45 45 H 1.09003 * 110.74460 * 272.33296 * 14 13 8 46 46 H 1.09000 * 110.74646 * 35.67125 * 14 13 8 47 47 H 1.09005 * 109.87731 * 219.50246 * 15 14 13 48 48 H 1.08999 * 110.00203 * 98.43854 * 15 14 13 49 49 H 1.09001 * 109.47249 * 300.00427 * 19 17 16 50 50 H 1.09005 * 109.47346 * 59.99978 * 19 17 16 51 51 H 0.97000 * 119.99692 * 179.97438 * 23 22 20 52 52 H 1.08994 * 110.38636 * 264.00975 * 28 16 15 53 53 H 1.08994 * 110.48067 * 141.67916 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 1.6928 -1.9809 1.4095 7 8 0.9953 -2.5702 0.6114 8 6 2.1956 -2.6913 2.6397 9 1 3.1227 -2.2333 2.9844 10 6 2.4224 -4.1896 2.3334 11 6 1.1123 -4.8796 2.8042 12 6 0.7435 -4.0786 4.0812 13 6 1.1421 -2.6399 3.7436 14 6 1.6627 -1.8976 4.9872 15 6 0.3648 -1.3714 5.6406 16 7 -0.6713 -1.3437 4.5964 17 6 -1.9520 -0.9622 4.7714 18 8 -2.7232 -0.9797 3.8356 19 6 -2.4258 -0.5139 6.1299 20 6 -3.8850 -0.1447 6.0564 21 1 -4.4161 -0.2261 5.1196 22 6 -4.5418 0.2981 7.1849 23 7 -3.8949 0.3977 8.3257 24 14 -6.3504 0.7564 7.0937 25 1 -6.8423 0.5565 5.7069 26 1 -7.1266 -0.1039 8.0225 27 1 -6.5202 2.1803 7.4793 28 6 -0.0770 -1.8032 3.3251 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4427 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6765 1.9565 0.8899 35 1 1.6769 -1.7489 -1.2492 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7208 -1.2494 38 1 2.5759 -0.2190 1.8348 39 1 2.5704 -4.3421 1.2644 40 1 3.2774 -4.5682 2.8936 41 1 1.2898 -5.9279 3.0443 42 1 0.3320 -4.7824 2.0493 43 1 1.3112 -4.4418 4.9378 44 1 -0.3266 -4.1431 4.2775 45 1 2.1816 -2.5832 5.6570 46 1 2.3126 -1.0711 4.6996 47 1 0.5266 -0.3657 6.0288 48 1 0.0585 -2.0355 6.4489 49 1 -2.2920 -1.3239 6.8469 50 1 -1.8469 0.3529 6.4488 51 1 -4.3569 0.7095 9.1195 52 1 0.2363 -0.9508 2.7224 53 1 -0.7874 -2.4177 2.7721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269023921.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:53 Heat of formation + Delta-G solvation = -112.465946 kcal Electronic energy + Delta-G solvation = -31594.506722 eV Core-core repulsion = 27657.123625 eV Total energy + Delta-G solvation = -3937.383096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.29453 -40.64334 -39.38301 -37.52054 -36.32023 -35.16080 -33.25243 -32.25764 -31.00762 -30.04038 -29.76256 -28.30014 -28.22434 -26.60205 -24.85387 -24.17221 -22.92301 -21.36579 -20.60279 -20.26896 -19.90340 -18.61263 -18.17130 -17.63923 -17.13618 -16.84621 -16.72118 -16.12308 -16.02562 -15.62669 -15.45104 -15.17923 -14.98762 -14.68454 -14.55895 -14.31431 -14.16792 -13.76486 -13.62833 -13.38359 -13.25968 -13.23753 -13.07305 -12.99077 -12.83387 -12.76481 -12.61802 -12.56918 -12.35814 -12.16588 -12.09464 -11.99471 -11.92871 -11.85384 -11.77660 -11.50183 -11.45847 -11.38563 -10.66272 -10.60029 -10.38961 -10.05193 -9.56802 -8.29519 -6.37135 1.35815 1.36300 1.51638 1.67966 1.79933 2.09879 2.23483 2.41231 3.04961 3.28049 3.41402 3.43973 3.77390 3.93138 3.99302 4.03039 4.11673 4.17660 4.18516 4.28563 4.30071 4.37395 4.54023 4.61852 4.62143 4.67815 4.70326 4.72875 4.78612 4.80018 4.84065 4.88553 4.92669 4.96861 4.97844 5.01914 5.04656 5.13376 5.16316 5.18810 5.20795 5.27580 5.29452 5.34712 5.38560 5.47341 5.47647 5.66689 5.70112 6.00988 6.58185 6.67896 6.76647 7.28679 7.37520 7.40114 8.82836 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.003418 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.558621 B = 8188.997291 C = 9390.267344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.168 3.832 3 C -0.148 4.148 4 C -0.155 4.155 5 N -0.718 5.718 6 C 0.517 3.483 7 O -0.567 6.567 8 C -0.093 4.093 9 H 0.140 0.860 10 C -0.095 4.095 11 C -0.123 4.123 12 C -0.109 4.109 13 C -0.053 4.053 14 C -0.103 4.103 15 C 0.091 3.909 16 N -0.624 5.624 17 C 0.525 3.475 18 O -0.593 6.593 19 C 0.023 3.977 20 C -0.542 4.542 21 H 0.049 0.951 22 C 0.015 3.985 23 N -0.920 5.920 24 Si 0.963 3.037 25 H -0.280 1.280 26 H -0.269 1.269 27 H -0.268 1.268 28 C 0.117 3.883 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.413 0.587 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.104 0.896 44 H 0.033 0.967 45 H 0.123 0.877 46 H 0.107 0.893 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.039 0.961 50 H 0.042 0.958 51 H 0.269 0.731 52 H 0.064 0.936 53 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.014 -3.988 -10.748 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.082 3.918 3 C -0.206 4.206 4 C -0.213 4.213 5 N -0.371 5.371 6 C 0.305 3.695 7 O -0.446 6.446 8 C -0.114 4.114 9 H 0.158 0.842 10 C -0.133 4.133 11 C -0.160 4.160 12 C -0.146 4.146 13 C -0.054 4.054 14 C -0.140 4.140 15 C -0.031 4.031 16 N -0.359 5.359 17 C 0.316 3.684 18 O -0.474 6.474 19 C -0.016 4.016 20 C -0.580 4.580 21 H 0.067 0.933 22 C -0.184 4.184 23 N -0.560 5.560 24 Si 0.788 3.212 25 H -0.205 1.205 26 H -0.194 1.194 27 H -0.193 1.193 28 C -0.006 4.006 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.250 0.750 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.055 0.945 43 H 0.123 0.877 44 H 0.052 0.948 45 H 0.141 0.859 46 H 0.125 0.875 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.057 0.943 50 H 0.060 0.940 51 H 0.078 0.922 52 H 0.082 0.918 53 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 24.015 -4.310 -11.614 27.022 hybrid contribution -1.739 0.544 0.182 1.831 sum 22.276 -3.767 -11.431 25.320 Atomic orbital electron populations 1.22195 0.96639 1.01784 1.01392 1.20348 0.92420 0.93475 0.85526 1.22043 1.02618 0.92444 1.03466 1.22125 1.01481 1.01100 0.96567 1.46251 1.53736 1.11674 1.25440 1.20922 0.79296 0.82051 0.87256 1.90653 1.38584 1.67216 1.48130 1.21913 0.99837 0.98532 0.91152 0.84249 1.22369 0.98204 0.90991 1.01688 1.22597 0.97468 0.99873 0.96111 1.22289 1.00192 0.92736 0.99384 1.21378 0.92519 0.95971 0.95542 1.22810 0.94833 1.01198 0.95156 1.22361 0.87828 1.02180 0.90691 1.48769 1.09250 1.65924 1.11965 1.21404 0.79960 0.75116 0.91900 1.90516 1.55379 1.56221 1.45276 1.18964 0.96683 0.97291 0.88640 1.21373 0.95748 1.44893 0.95962 0.93315 1.25750 1.03074 0.94990 0.94628 1.70024 1.38190 1.47334 1.00423 0.85430 0.79323 0.78557 0.77929 1.20466 1.19415 1.19259 1.22257 0.94709 0.97144 0.86476 0.94620 0.90950 0.93653 0.89765 0.90223 0.92155 0.93156 0.91124 0.91186 0.75028 0.92025 0.87268 0.89669 0.94523 0.87731 0.94819 0.85925 0.87471 0.90902 0.91469 0.94273 0.94046 0.92210 0.91773 0.95228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 8.37 71.98 0.60 -3.80 16 2 C 0.17 3.23 1.06 3.60 0.00 3.23 16 3 C -0.15 -1.93 8.59 71.98 0.62 -1.31 16 4 C -0.15 -2.88 8.40 71.98 0.60 -2.27 16 5 N -0.72 -12.67 4.44 -422.92 -1.88 -14.55 16 6 C 0.52 11.57 3.91 87.66 0.34 11.91 16 7 O -0.57 -17.68 12.27 -3.02 -0.04 -17.72 16 8 C -0.09 -1.47 2.96 -11.10 -0.03 -1.50 16 9 H 0.14 0.99 7.58 -2.39 -0.02 0.98 16 10 C -0.09 -1.45 6.08 31.96 0.19 -1.26 16 11 C -0.12 -2.53 6.90 32.16 0.22 -2.31 16 12 C -0.11 -2.36 5.83 31.36 0.18 -2.18 16 13 C -0.05 -1.10 0.74 -51.74 -0.04 -1.14 16 14 C -0.10 -1.57 5.79 31.42 0.18 -1.39 16 15 C 0.09 2.45 6.41 86.79 0.56 3.01 16 16 N -0.62 -23.89 3.34 -812.95 -2.71 -26.60 16 17 C 0.52 26.89 7.84 87.66 0.69 27.57 16 18 O -0.59 -35.56 15.74 -3.02 -0.05 -35.61 16 19 C 0.02 1.29 4.65 29.10 0.14 1.42 16 20 C -0.54 -33.60 8.92 25.60 0.23 -33.37 16 21 H 0.05 3.23 6.75 -2.91 -0.02 3.21 16 22 C 0.01 0.86 5.46 84.65 0.46 1.32 16 23 N -0.92 -54.48 13.29 21.45 0.28 -54.20 16 24 Si 0.96 46.64 29.54 68.60 2.03 48.67 16 25 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 28 C 0.12 3.90 4.69 86.38 0.41 4.30 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.55 6.17 -2.38 -0.01 1.53 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 1.25 6.17 -2.39 -0.01 1.24 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.41 4.58 8.47 -92.71 -0.79 3.80 16 39 H 0.06 1.13 7.51 -2.39 -0.02 1.11 16 40 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 1.61 7.61 -2.39 -0.02 1.60 16 44 H 0.03 1.00 7.82 -2.39 -0.02 0.98 16 45 H 0.12 1.12 7.67 -2.39 -0.02 1.10 16 46 H 0.11 1.04 7.86 -2.39 -0.02 1.02 16 47 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 48 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.04 2.27 8.14 -2.38 -0.02 2.25 16 51 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 52 H 0.06 2.11 5.95 -2.39 -0.01 2.10 16 53 H 0.03 1.25 7.92 -2.39 -0.02 1.23 16 Total: -1.00 -84.48 406.31 3.09 -81.38 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.10 Total: 16.40 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.36 Total: 2.23 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -4.30 Total: -95.35 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.08 Total: -53.33 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -84.48 3.09 -81.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023921.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.084 kcal (2) G-P(sol) polarization free energy of solvation -84.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds