Wall clock time and date at job start Tue Mar 31 2020 20:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00216 * 2 1 4 4 C 1.53004 * 109.46820 * 125.00347 * 3 2 1 5 5 O 1.42901 * 109.46908 * 180.02562 * 4 3 2 6 6 C 1.42896 * 114.00265 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47345 * 179.97438 * 6 5 4 8 8 O 1.21273 * 119.99995 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99911 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63072 * 355.46225 * 9 7 6 11 11 C 1.53194 * 108.77810 * 233.88078 * 10 9 7 12 12 C 1.53033 * 109.31444 * 305.36820 * 11 10 9 13 13 C 1.53043 * 109.53864 * 61.36362 * 12 11 10 14 14 C 1.46924 * 120.63082 * 175.74551 * 9 7 6 15 15 H 1.09008 * 109.58720 * 245.90267 * 14 9 7 16 16 C 1.52999 * 109.58647 * 6.32910 * 14 9 7 17 17 H 1.09001 * 110.64034 * 308.46656 * 16 14 9 18 18 C 1.55157 * 110.72277 * 185.32761 * 16 14 9 19 19 C 1.54906 * 101.58050 * 206.13501 * 18 16 14 20 20 N 1.47416 * 104.83662 * 37.00691 * 19 18 16 21 21 C 1.36934 * 125.65103 * 155.90990 * 20 19 18 22 22 H 1.07997 * 120.00288 * 5.00720 * 21 20 19 23 23 C 1.38818 * 120.00081 * 185.00969 * 21 20 19 24 24 N 1.31622 * 119.99839 * 354.89765 * 23 21 20 25 25 Si 1.86803 * 120.00031 * 174.90582 * 23 21 20 26 26 H 1.48496 * 109.47187 * 94.99725 * 25 23 21 27 27 H 1.48496 * 109.46898 * 214.99856 * 25 23 21 28 28 H 1.48500 * 109.46860 * 334.99656 * 25 23 21 29 29 C 1.47328 * 108.73489 * 335.71463 * 20 19 18 30 30 H 1.08002 * 120.00301 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99647 * 359.97438 * 1 2 3 32 32 H 1.08008 * 119.99811 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.46952 * 5.00606 * 3 2 1 34 34 H 1.08992 * 109.46897 * 245.00225 * 3 2 1 35 35 H 1.08994 * 109.47270 * 60.00112 * 4 3 2 36 36 H 1.09003 * 109.46883 * 299.99811 * 4 3 2 37 37 H 1.09001 * 109.46665 * 59.99636 * 6 5 4 38 38 H 1.08999 * 109.47272 * 300.00731 * 6 5 4 39 39 H 1.09003 * 109.58723 * 353.67236 * 10 9 7 40 40 H 1.09003 * 109.58789 * 114.09595 * 10 9 7 41 41 H 1.08993 * 109.49824 * 185.41124 * 11 10 9 42 42 H 1.09001 * 109.51828 * 65.33479 * 11 10 9 43 43 H 1.08999 * 109.46189 * 301.34557 * 12 11 10 44 44 H 1.08997 * 109.46359 * 181.37983 * 12 11 10 45 45 H 1.08998 * 109.49861 * 178.68606 * 13 12 11 46 46 H 1.09001 * 109.50062 * 58.58141 * 13 12 11 47 47 H 1.09008 * 110.99887 * 324.20520 * 18 16 14 48 48 H 1.08995 * 111.00584 * 88.02065 * 18 16 14 49 49 H 1.09003 * 110.36840 * 155.84729 * 19 18 16 50 50 H 1.09005 * 110.36766 * 278.16698 * 19 18 16 51 51 H 0.97001 * 119.99653 * 179.97438 * 24 23 21 52 52 H 1.08994 * 110.06282 * 241.87263 * 29 20 19 53 53 H 1.09003 * 109.84709 * 120.61139 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 8 3.7493 2.5707 1.1820 6 6 4.6880 2.6999 2.2516 7 6 5.3801 4.0350 2.1542 8 8 5.0970 4.8007 1.2573 9 7 6.3136 4.3781 3.0637 10 6 6.5968 3.5056 4.2114 11 6 6.4661 4.3259 5.4986 12 6 7.3694 5.5578 5.4076 13 6 6.9271 6.4311 4.2312 14 6 7.0631 5.6347 2.9297 15 1 8.1145 5.4150 2.7439 16 6 6.4933 6.4503 1.7674 17 1 6.4321 5.8421 0.8649 18 6 7.3486 7.7203 1.5166 19 6 6.3106 8.6717 0.8709 20 7 5.0493 8.3920 1.5809 21 6 3.9943 9.2563 1.7043 22 1 4.0122 10.2069 1.1921 23 6 2.9018 8.9105 2.4879 24 7 2.8337 7.7133 3.0305 25 14 1.5283 10.1443 2.7719 26 1 0.4439 9.9139 1.7839 27 1 0.9898 9.9779 4.1457 28 1 2.0594 11.5218 2.6119 29 6 5.1091 7.0270 2.1319 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3586 2.1317 0.0897 34 1 2.6212 1.4026 -0.9313 35 1 3.7400 0.5064 1.0920 36 1 2.4773 1.2354 2.1130 37 1 5.4274 1.9019 2.1844 38 1 4.1642 2.6304 3.2050 39 1 5.8832 2.6818 4.2290 40 1 7.6102 3.1122 4.1301 41 1 6.7669 3.7163 6.3506 42 1 5.4308 4.6424 5.6251 43 1 8.4014 5.2411 5.2567 44 1 7.2970 6.1304 6.3322 45 1 7.5560 7.3199 4.1812 46 1 5.8873 6.7279 4.3691 47 1 7.7239 8.1300 2.4544 48 1 8.1677 7.5102 0.8289 49 1 6.6059 9.7108 1.0172 50 1 6.2045 8.4527 -0.1916 51 1 2.0705 7.4718 3.5783 52 1 4.3238 6.4118 1.6928 53 1 4.9949 7.0599 3.2154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269557858.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:32 Heat of formation + Delta-G solvation = -1.918521 kcal Electronic energy + Delta-G solvation = -31426.412170 eV Core-core repulsion = 27493.822769 eV Total energy + Delta-G solvation = -3932.589400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.45716 -38.18063 -36.85668 -36.63041 -35.02246 -32.91214 -32.54590 -31.19814 -29.81988 -28.49223 -27.63723 -26.74304 -24.86579 -24.08524 -23.10319 -22.66395 -20.84241 -20.18552 -19.93594 -19.53111 -18.18576 -16.78596 -16.64906 -16.37809 -16.24625 -15.34055 -15.20558 -14.99831 -14.73326 -14.46163 -14.10402 -14.00895 -13.65065 -13.58489 -13.38074 -13.01588 -12.97374 -12.73767 -12.37836 -11.95957 -11.89575 -11.58019 -11.49381 -11.41910 -11.27083 -11.16201 -11.06785 -10.87840 -10.72639 -10.67160 -10.55009 -10.27002 -9.88416 -9.88031 -9.69822 -9.58744 -9.52155 -9.37089 -9.24802 -8.41147 -8.30446 -7.90714 -6.48277 -5.48773 -2.78990 2.06134 2.97714 3.12203 3.50695 3.55588 3.57484 3.92956 4.67058 4.71976 4.83375 4.84440 4.96855 5.01000 5.09324 5.11638 5.14673 5.27789 5.32640 5.33379 5.36260 5.47611 5.49581 5.62242 5.65712 5.70178 5.70991 5.85090 5.85576 5.91319 5.96183 5.97958 6.05680 6.11776 6.25172 6.30484 6.32661 6.44272 6.47353 6.58503 6.60237 6.73756 6.81591 6.86994 7.03050 7.16556 7.19333 7.32413 7.81126 7.83905 8.13146 8.26651 8.50600 8.89454 9.46645 10.08244 10.77586 11.61781 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.007806 B = 0.004368 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3586.301191 B = 6409.018309 C = 8477.019243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.095 4.095 4 C 0.067 3.933 5 O -0.358 6.358 6 C 0.049 3.951 7 C 0.499 3.501 8 O -0.468 6.468 9 N -0.609 5.609 10 C 0.111 3.889 11 C -0.136 4.136 12 C -0.116 4.116 13 C -0.145 4.145 14 C 0.170 3.830 15 H 0.061 0.939 16 C -0.119 4.119 17 H 0.102 0.898 18 C -0.137 4.137 19 C 0.137 3.863 20 N -0.609 5.609 21 C -0.221 4.221 22 H 0.073 0.927 23 C -0.009 4.009 24 N -0.915 5.915 25 Si 0.904 3.096 26 H -0.292 1.292 27 H -0.293 1.293 28 H -0.283 1.283 29 C 0.185 3.815 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.032 0.968 50 H 0.012 0.988 51 H 0.246 0.754 52 H 0.066 0.934 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.481 -17.293 2.982 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.171 4.171 3 C -0.132 4.132 4 C -0.010 4.010 5 O -0.276 6.276 6 C -0.031 4.031 7 C 0.285 3.715 8 O -0.340 6.340 9 N -0.346 5.346 10 C -0.012 4.012 11 C -0.175 4.175 12 C -0.154 4.154 13 C -0.183 4.183 14 C 0.067 3.933 15 H 0.079 0.921 16 C -0.138 4.138 17 H 0.120 0.880 18 C -0.176 4.176 19 C 0.010 3.990 20 N -0.335 5.335 21 C -0.350 4.350 22 H 0.091 0.909 23 C -0.205 4.205 24 N -0.563 5.563 25 Si 0.735 3.265 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.208 1.208 29 C 0.062 3.938 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.114 0.886 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.051 0.949 50 H 0.030 0.970 51 H 0.057 0.943 52 H 0.084 0.916 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.068 -16.726 2.434 18.320 hybrid contribution -0.731 0.310 0.602 0.996 sum 6.338 -16.416 3.037 17.857 Atomic orbital electron populations 1.23923 0.95954 1.02060 1.00684 1.22805 0.96003 0.97937 1.00314 1.20649 0.98137 0.95887 0.98552 1.22431 0.93883 0.86187 0.98483 1.88052 1.54341 1.36929 1.48300 1.22248 0.92709 0.96493 0.91638 1.19994 0.80118 0.87725 0.83638 1.90804 1.60059 1.49012 1.34127 1.47894 1.39578 1.22272 1.24843 1.21656 1.00929 0.92720 0.85941 1.21919 1.01585 0.97337 0.96610 1.21497 0.98495 0.96361 0.99027 1.22264 1.04826 0.97834 0.93366 1.21138 0.93512 0.82525 0.96096 0.92117 1.23156 0.98266 0.94657 0.97747 0.87982 1.22925 0.97163 0.97606 0.99884 1.21470 0.87111 0.95915 0.94458 1.44671 1.12980 1.13482 1.62411 1.19046 0.95142 0.97322 1.23465 0.90937 1.24752 0.98413 0.96881 1.00466 1.70033 1.30275 1.18099 1.37933 0.86206 0.82487 0.80646 0.77146 1.21917 1.21907 1.20847 1.21789 0.90701 0.83710 0.97641 0.88447 0.88247 0.87352 0.90186 0.89954 0.93461 0.93234 0.91257 0.90920 0.90509 0.91729 0.91325 0.90981 0.92557 0.92043 0.91096 0.88578 0.92153 0.92904 0.94949 0.96984 0.94317 0.91634 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 14.32 29.02 0.42 -1.28 16 2 C -0.15 -1.43 9.52 -36.02 -0.34 -1.77 16 3 C -0.10 -1.10 6.03 -27.88 -0.17 -1.27 16 4 C 0.07 0.80 5.92 37.16 0.22 1.02 16 5 O -0.36 -5.88 9.88 -55.14 -0.54 -6.43 16 6 C 0.05 0.69 4.81 36.00 0.17 0.86 16 7 C 0.50 8.97 7.43 -10.99 -0.08 8.89 16 8 O -0.47 -10.77 9.57 -14.35 -0.14 -10.91 16 9 N -0.61 -9.39 2.96 -165.22 -0.49 -9.88 16 10 C 0.11 1.21 6.33 -3.71 -0.02 1.18 16 11 C -0.14 -1.53 6.08 -26.61 -0.16 -1.69 16 12 C -0.12 -1.44 5.88 -26.69 -0.16 -1.59 16 13 C -0.15 -2.38 4.79 -26.61 -0.13 -2.51 16 14 C 0.17 2.83 2.75 -67.60 -0.19 2.65 16 15 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 16 C -0.12 -2.49 2.06 -88.79 -0.18 -2.67 16 17 H 0.10 2.32 5.76 -52.98 -0.31 2.01 16 18 C -0.14 -2.66 6.44 -24.58 -0.16 -2.82 16 19 C 0.14 3.19 7.23 -2.54 -0.02 3.17 16 20 N -0.61 -17.07 3.40 -169.84 -0.58 -17.65 16 21 C -0.22 -6.65 10.27 -15.06 -0.15 -6.80 16 22 H 0.07 2.11 7.83 -52.49 -0.41 1.70 16 23 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 16 24 N -0.92 -28.35 10.34 55.49 0.57 -27.77 16 25 Si 0.90 23.35 29.56 -169.99 -5.02 18.33 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 28 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 29 C 0.18 4.84 3.86 -2.90 -0.01 4.83 16 30 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.10 0.93 7.84 -52.48 -0.41 0.51 16 32 H 0.11 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.08 1.04 7.79 -51.93 -0.40 0.64 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 38 H 0.07 0.90 7.51 -51.93 -0.39 0.51 16 39 H 0.08 0.68 5.96 -51.93 -0.31 0.38 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.15 6.65 -51.93 -0.35 0.81 16 46 H 0.10 2.01 5.45 -51.93 -0.28 1.72 16 47 H 0.06 1.12 6.37 -51.92 -0.33 0.79 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 51 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 52 H 0.07 2.02 5.30 -51.93 -0.28 1.74 16 53 H 0.05 1.41 4.10 -51.93 -0.21 1.20 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -35.78 397.03 -10.43 -46.21 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -9.15 Total: 2.28 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -1.06 Total: -0.16 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.49 Total: -55.30 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.68 Total: -17.34 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.78 -10.43 -46.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269557858.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.294 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds