Wall clock time and date at job start Tue Mar 31 2020 20:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00216 * 2 1 4 4 C 1.53004 * 109.46820 * 125.00347 * 3 2 1 5 5 O 1.42901 * 109.46908 * 180.02562 * 4 3 2 6 6 C 1.42896 * 114.00265 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47345 * 179.97438 * 6 5 4 8 8 O 1.21273 * 119.99995 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99911 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63072 * 355.46225 * 9 7 6 11 11 C 1.53194 * 108.77810 * 233.88078 * 10 9 7 12 12 C 1.53033 * 109.31444 * 305.36820 * 11 10 9 13 13 C 1.53043 * 109.53864 * 61.36362 * 12 11 10 14 14 C 1.46924 * 120.63082 * 175.74551 * 9 7 6 15 15 H 1.09008 * 109.58720 * 245.90267 * 14 9 7 16 16 C 1.52999 * 109.58647 * 6.32910 * 14 9 7 17 17 H 1.09001 * 110.64034 * 308.46656 * 16 14 9 18 18 C 1.55157 * 110.72277 * 185.32761 * 16 14 9 19 19 C 1.54906 * 101.58050 * 206.13501 * 18 16 14 20 20 N 1.47416 * 104.83662 * 37.00691 * 19 18 16 21 21 C 1.36934 * 125.65103 * 155.90990 * 20 19 18 22 22 H 1.07997 * 120.00288 * 5.00720 * 21 20 19 23 23 C 1.38818 * 120.00081 * 185.00969 * 21 20 19 24 24 N 1.31622 * 119.99839 * 354.89765 * 23 21 20 25 25 Si 1.86803 * 120.00031 * 174.90582 * 23 21 20 26 26 H 1.48496 * 109.47187 * 94.99725 * 25 23 21 27 27 H 1.48496 * 109.46898 * 214.99856 * 25 23 21 28 28 H 1.48500 * 109.46860 * 334.99656 * 25 23 21 29 29 C 1.47328 * 108.73489 * 335.71463 * 20 19 18 30 30 H 1.08002 * 120.00301 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99647 * 359.97438 * 1 2 3 32 32 H 1.08008 * 119.99811 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.46952 * 5.00606 * 3 2 1 34 34 H 1.08992 * 109.46897 * 245.00225 * 3 2 1 35 35 H 1.08994 * 109.47270 * 60.00112 * 4 3 2 36 36 H 1.09003 * 109.46883 * 299.99811 * 4 3 2 37 37 H 1.09001 * 109.46665 * 59.99636 * 6 5 4 38 38 H 1.08999 * 109.47272 * 300.00731 * 6 5 4 39 39 H 1.09003 * 109.58723 * 353.67236 * 10 9 7 40 40 H 1.09003 * 109.58789 * 114.09595 * 10 9 7 41 41 H 1.08993 * 109.49824 * 185.41124 * 11 10 9 42 42 H 1.09001 * 109.51828 * 65.33479 * 11 10 9 43 43 H 1.08999 * 109.46189 * 301.34557 * 12 11 10 44 44 H 1.08997 * 109.46359 * 181.37983 * 12 11 10 45 45 H 1.08998 * 109.49861 * 178.68606 * 13 12 11 46 46 H 1.09001 * 109.50062 * 58.58141 * 13 12 11 47 47 H 1.09008 * 110.99887 * 324.20520 * 18 16 14 48 48 H 1.08995 * 111.00584 * 88.02065 * 18 16 14 49 49 H 1.09003 * 110.36840 * 155.84729 * 19 18 16 50 50 H 1.09005 * 110.36766 * 278.16698 * 19 18 16 51 51 H 0.97001 * 119.99653 * 179.97438 * 24 23 21 52 52 H 1.08994 * 110.06282 * 241.87263 * 29 20 19 53 53 H 1.09003 * 109.84709 * 120.61139 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 8 3.7493 2.5707 1.1820 6 6 4.6880 2.6999 2.2516 7 6 5.3801 4.0350 2.1542 8 8 5.0970 4.8007 1.2573 9 7 6.3136 4.3781 3.0637 10 6 6.5968 3.5056 4.2114 11 6 6.4661 4.3259 5.4986 12 6 7.3694 5.5578 5.4076 13 6 6.9271 6.4311 4.2312 14 6 7.0631 5.6347 2.9297 15 1 8.1145 5.4150 2.7439 16 6 6.4933 6.4503 1.7674 17 1 6.4321 5.8421 0.8649 18 6 7.3486 7.7203 1.5166 19 6 6.3106 8.6717 0.8709 20 7 5.0493 8.3920 1.5809 21 6 3.9943 9.2563 1.7043 22 1 4.0122 10.2069 1.1921 23 6 2.9018 8.9105 2.4879 24 7 2.8337 7.7133 3.0305 25 14 1.5283 10.1443 2.7719 26 1 0.4439 9.9139 1.7839 27 1 0.9898 9.9779 4.1457 28 1 2.0594 11.5218 2.6119 29 6 5.1091 7.0270 2.1319 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3586 2.1317 0.0897 34 1 2.6212 1.4026 -0.9313 35 1 3.7400 0.5064 1.0920 36 1 2.4773 1.2354 2.1130 37 1 5.4274 1.9019 2.1844 38 1 4.1642 2.6304 3.2050 39 1 5.8832 2.6818 4.2290 40 1 7.6102 3.1122 4.1301 41 1 6.7669 3.7163 6.3506 42 1 5.4308 4.6424 5.6251 43 1 8.4014 5.2411 5.2567 44 1 7.2970 6.1304 6.3322 45 1 7.5560 7.3199 4.1812 46 1 5.8873 6.7279 4.3691 47 1 7.7239 8.1300 2.4544 48 1 8.1677 7.5102 0.8289 49 1 6.6059 9.7108 1.0172 50 1 6.2045 8.4527 -0.1916 51 1 2.0705 7.4718 3.5783 52 1 4.3238 6.4118 1.6928 53 1 4.9949 7.0599 3.2154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269557858.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:31 Heat of formation + Delta-G solvation = -24.661034 kcal Electronic energy + Delta-G solvation = -31427.398359 eV Core-core repulsion = 27493.822769 eV Total energy + Delta-G solvation = -3933.575590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.79790 -39.39454 -38.38691 -37.99668 -35.90000 -34.79028 -33.81795 -32.88025 -30.76359 -30.31638 -28.93093 -28.30160 -26.69815 -25.40270 -24.24320 -23.89204 -22.07655 -21.96599 -21.09298 -20.68621 -19.61987 -18.71648 -17.93593 -17.44900 -17.43812 -16.91203 -16.47573 -16.29926 -16.23019 -15.81266 -15.65115 -15.27109 -15.00958 -14.73643 -14.49636 -14.40860 -14.19564 -13.99301 -13.65422 -13.56289 -13.33880 -13.23914 -13.15397 -12.81382 -12.71703 -12.46290 -12.33908 -12.18043 -12.04823 -11.99244 -11.90047 -11.86768 -11.65142 -11.42340 -11.34525 -11.25640 -11.00872 -10.66337 -10.50558 -10.29054 -9.78107 -9.30733 -8.70693 -7.78322 -5.12410 1.32291 1.39214 1.42620 1.51653 1.75057 1.92970 2.49909 2.92176 3.35503 3.58420 3.82780 3.88642 3.97157 4.00540 4.07679 4.10233 4.14159 4.17475 4.20022 4.25634 4.31627 4.34751 4.38058 4.43903 4.44991 4.47026 4.63791 4.70849 4.78243 4.88837 4.90065 4.91130 4.99169 5.00756 5.07186 5.07996 5.09713 5.14496 5.27093 5.30772 5.35194 5.48349 5.52069 5.63743 5.68867 5.82266 5.86309 6.05806 6.15022 6.18929 6.37416 6.62188 7.17239 7.48939 7.88801 8.54611 9.30033 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.007806 B = 0.004368 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3586.301191 B = 6409.018309 C = 8477.019243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 C -0.098 4.098 4 C 0.065 3.935 5 O -0.404 6.404 6 C 0.054 3.946 7 C 0.484 3.516 8 O -0.534 6.534 9 N -0.607 5.607 10 C 0.104 3.896 11 C -0.134 4.134 12 C -0.110 4.110 13 C -0.138 4.138 14 C 0.172 3.828 15 H 0.098 0.902 16 C -0.108 4.108 17 H 0.083 0.917 18 C -0.121 4.121 19 C 0.126 3.874 20 N -0.636 5.636 21 C -0.245 4.245 22 H 0.074 0.926 23 C -0.066 4.066 24 N -0.941 5.941 25 Si 0.975 3.025 26 H -0.292 1.292 27 H -0.290 1.290 28 H -0.267 1.267 29 C 0.203 3.797 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.037 0.963 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.040 0.960 50 H 0.005 0.995 51 H 0.240 0.760 52 H 0.012 0.988 53 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.865 -19.605 4.568 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.171 4.171 3 C -0.135 4.135 4 C -0.011 4.011 5 O -0.323 6.323 6 C -0.025 4.025 7 C 0.272 3.728 8 O -0.411 6.411 9 N -0.342 5.342 10 C -0.017 4.017 11 C -0.172 4.172 12 C -0.148 4.148 13 C -0.176 4.176 14 C 0.069 3.931 15 H 0.116 0.884 16 C -0.127 4.127 17 H 0.101 0.899 18 C -0.160 4.160 19 C 0.001 3.999 20 N -0.363 5.363 21 C -0.375 4.375 22 H 0.092 0.908 23 C -0.259 4.259 24 N -0.590 5.590 25 Si 0.803 3.197 26 H -0.219 1.219 27 H -0.216 1.216 28 H -0.192 1.192 29 C 0.080 3.920 30 H 0.138 0.862 31 H 0.105 0.895 32 H 0.152 0.848 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.056 0.944 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.091 0.909 48 H 0.108 0.892 49 H 0.059 0.941 50 H 0.022 0.978 51 H 0.049 0.951 52 H 0.030 0.970 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 9.495 -19.053 4.048 21.670 hybrid contribution -1.506 1.039 0.069 1.831 sum 7.989 -18.014 4.118 20.132 Atomic orbital electron populations 1.24088 0.96062 1.02592 1.00094 1.22829 0.96047 0.97497 1.00767 1.20660 0.97840 0.96481 0.98516 1.22628 0.94321 0.85500 0.98653 1.88011 1.55407 1.39466 1.49462 1.22337 0.93312 0.95224 0.91656 1.20888 0.80038 0.88808 0.83042 1.90792 1.62181 1.51192 1.36916 1.48057 1.38461 1.22172 1.25558 1.22078 1.03757 0.92343 0.83563 1.21929 0.99428 0.97473 0.98398 1.21485 1.00286 0.96059 0.96937 1.22119 1.01339 0.98845 0.95341 1.21096 0.94951 0.82834 0.94228 0.88446 1.22868 0.95534 0.95362 0.98935 0.89941 1.22872 0.96694 0.95536 1.00888 1.21692 0.86740 0.97536 0.93947 1.45101 1.14134 1.14184 1.62892 1.19450 0.96384 0.97902 1.23729 0.90804 1.25645 1.01010 0.98799 1.00463 1.70309 1.30553 1.19827 1.38278 0.85114 0.79002 0.78852 0.76720 1.21905 1.21604 1.19152 1.21430 0.92570 0.82359 0.95684 0.86189 0.89515 0.84805 0.93012 0.90714 0.90271 0.92496 0.86743 0.89388 0.88229 0.87973 0.87436 0.94417 0.89305 0.91824 0.91198 0.94178 0.90905 0.89214 0.94138 0.97764 0.95060 0.97015 0.95323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.30 14.32 67.78 0.97 -2.33 16 2 C -0.15 -2.72 9.52 25.65 0.24 -2.47 16 3 C -0.10 -2.34 6.03 29.85 0.18 -2.16 16 4 C 0.06 1.50 5.92 71.98 0.43 1.93 16 5 O -0.40 -13.62 9.88 -129.94 -1.28 -14.91 16 6 C 0.05 1.46 4.81 71.24 0.34 1.80 16 7 C 0.48 17.76 7.43 87.66 0.65 18.42 16 8 O -0.53 -26.33 9.57 16.03 0.15 -26.18 16 9 N -0.61 -18.02 2.96 -795.02 -2.36 -20.38 16 10 C 0.10 1.87 6.33 86.36 0.55 2.42 16 11 C -0.13 -2.63 6.08 30.67 0.19 -2.44 16 12 C -0.11 -2.42 5.88 30.62 0.18 -2.24 16 13 C -0.14 -4.49 4.79 30.67 0.15 -4.34 16 14 C 0.17 5.56 2.75 44.98 0.12 5.68 16 15 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 16 C -0.11 -4.62 2.06 -9.61 -0.02 -4.64 16 17 H 0.08 3.92 5.76 -19.06 -0.11 3.81 16 18 C -0.12 -4.64 6.44 31.99 0.21 -4.44 16 19 C 0.13 6.06 7.23 86.86 0.63 6.68 16 20 N -0.64 -37.64 3.40 -691.24 -2.35 -39.99 16 21 C -0.25 -15.47 10.27 84.04 0.86 -14.60 16 22 H 0.07 4.47 7.83 -2.91 -0.02 4.45 16 23 C -0.07 -4.14 5.48 84.86 0.47 -3.68 16 24 N -0.94 -61.91 10.34 21.65 0.22 -61.69 16 25 Si 0.97 49.89 29.56 68.60 2.03 51.92 16 26 H -0.29 -14.84 7.11 99.48 0.71 -14.14 16 27 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 28 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 29 C 0.20 11.36 3.86 86.67 0.33 11.69 16 30 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.09 1.69 7.84 -2.91 -0.02 1.66 16 32 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.05 1.48 7.79 -2.39 -0.02 1.46 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.12 2.02 8.09 -2.39 -0.02 2.00 16 38 H 0.09 2.07 7.51 -2.39 -0.02 2.05 16 39 H 0.10 1.36 5.96 -2.39 -0.01 1.35 16 40 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.07 2.21 6.65 -2.39 -0.02 2.20 16 46 H 0.04 1.77 5.45 -2.39 -0.01 1.76 16 47 H 0.07 2.60 6.37 -2.38 -0.02 2.59 16 48 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 49 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 51 H 0.24 15.34 8.31 -92.71 -0.77 14.57 16 52 H 0.01 0.80 5.30 -2.39 -0.01 0.79 16 53 H 0.03 1.73 4.10 -2.39 -0.01 1.72 16 Total: -1.00 -88.33 397.03 3.67 -84.66 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.78 Total: 21.28 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 6.48 Total: 5.28 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -4.48 Total: -122.06 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -1.13 Total: -41.08 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.03 Total: 51.92 kcal Total: -88.33 3.67 -84.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269557858.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.000 kcal (2) G-P(sol) polarization free energy of solvation -88.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds