Wall clock time and date at job start Tue Mar 31 2020 20:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47070 * 2 1 4 4 C 1.53005 * 109.46653 * 119.99581 * 2 1 3 5 5 N 1.46500 * 109.47302 * 65.00172 * 4 2 1 6 6 C 1.46947 * 124.35184 * 89.99840 * 5 4 2 7 7 C 1.53687 * 105.32255 * 163.69416 * 6 5 4 8 8 C 1.53855 * 102.60001 * 24.57529 * 7 6 5 9 9 C 1.34513 * 124.34706 * 269.70076 * 5 4 2 10 10 O 1.21283 * 124.94993 * 0.36996 * 9 5 4 11 11 C 1.52269 * 110.86900 * 142.83123 * 7 6 5 12 12 C 1.53208 * 109.37885 * 175.97312 * 11 7 6 13 13 C 1.53035 * 109.46563 * 300.15095 * 12 11 7 14 14 C 1.53205 * 109.48686 * 61.95087 * 13 12 11 15 15 N 1.45959 * 110.84644 * 266.34661 * 7 6 5 16 16 C 1.34769 * 120.64281 * 5.25264 * 15 7 6 17 17 O 1.21286 * 119.99931 * 4.48980 * 16 15 7 18 18 C 1.50695 * 120.00411 * 184.49144 * 16 15 7 19 19 C 1.52995 * 109.47604 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.47604 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99734 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00221 * 179.97438 * 20 19 18 23 23 N 1.31522 * 119.99839 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 119.99948 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47041 * 89.99548 * 24 22 20 26 26 H 1.48507 * 109.46881 * 209.99319 * 24 22 20 27 27 H 1.48499 * 109.46887 * 329.99519 * 24 22 20 28 28 H 1.08997 * 109.47699 * 300.00957 * 1 2 3 29 29 H 1.09000 * 109.46807 * 60.00527 * 1 2 3 30 30 H 1.08999 * 109.47484 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47205 * 239.98966 * 2 1 3 32 32 H 1.08998 * 109.46915 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46875 * 299.99431 * 3 2 1 34 34 H 1.08995 * 109.47217 * 59.99317 * 3 2 1 35 35 H 1.08999 * 109.46854 * 185.00425 * 4 2 1 36 36 H 1.09005 * 109.47090 * 305.00326 * 4 2 1 37 37 H 1.09002 * 110.27514 * 282.65598 * 6 5 4 38 38 H 1.08994 * 110.27409 * 44.72889 * 6 5 4 39 39 H 1.08994 * 110.51894 * 94.64722 * 8 7 6 40 40 H 1.09007 * 110.50984 * 217.36861 * 8 7 6 41 41 H 1.08996 * 109.48995 * 295.95376 * 11 7 6 42 42 H 1.09000 * 109.48175 * 56.00491 * 11 7 6 43 43 H 1.09001 * 109.46983 * 180.14725 * 12 11 7 44 44 H 1.09004 * 109.47239 * 60.14984 * 12 11 7 45 45 H 1.09003 * 109.46615 * 301.94808 * 13 12 11 46 46 H 1.08997 * 109.46993 * 181.95975 * 13 12 11 47 47 H 1.08998 * 109.61268 * 184.97867 * 14 13 12 48 48 H 1.08992 * 109.60951 * 64.45922 * 14 13 12 49 49 H 1.08999 * 109.47604 * 300.00068 * 18 16 15 50 50 H 1.09004 * 109.47304 * 59.99758 * 18 16 15 51 51 H 1.09006 * 109.47112 * 300.00424 * 19 18 16 52 52 H 1.09000 * 109.47328 * 59.99568 * 19 18 16 53 53 H 0.96997 * 119.99632 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6523 -2.1328 1.1908 6 6 2.4696 -3.1926 0.5840 7 6 1.8849 -4.5108 1.1152 8 6 0.4366 -4.1213 1.4587 9 6 0.5052 -2.6262 1.6907 10 8 -0.3511 -1.9691 2.2439 11 6 1.9126 -5.5888 0.0401 12 6 1.4172 -6.9115 0.6335 13 6 2.3248 -7.3207 1.7958 14 6 2.2567 -6.2570 2.8963 15 7 2.5983 -4.9514 2.3099 16 6 3.5511 -4.1770 2.8657 17 8 3.7667 -3.0688 2.4225 18 6 4.3487 -4.6881 4.0377 19 6 5.3558 -3.6218 4.4731 20 6 6.1539 -4.1331 5.6447 21 1 5.9622 -5.1201 6.0391 22 6 7.1294 -3.3413 6.2125 23 7 7.8255 -3.7874 7.2354 24 14 7.4615 -1.6345 5.5299 25 1 6.6018 -0.6459 6.2291 26 1 8.8895 -1.2860 5.7415 27 1 7.1571 -1.6149 4.0766 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8898 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1262 -0.6442 1.2953 36 1 1.6052 -0.2616 2.1371 37 1 2.3907 -3.1551 -0.5026 38 1 3.5102 -3.0898 0.8915 39 1 -0.2287 -4.3526 0.6269 40 1 0.1087 -4.6310 2.3647 41 1 1.2647 -5.2954 -0.7858 42 1 2.9325 -5.7129 -0.3240 43 1 1.4389 -7.6849 -0.1343 44 1 0.3966 -6.7876 0.9956 45 1 3.3514 -7.4108 1.4407 46 1 1.9933 -8.2789 2.1956 47 1 2.9680 -6.5010 3.6854 48 1 1.2481 -6.2206 3.3079 49 1 3.6757 -4.9121 4.8653 50 1 4.8815 -5.5936 3.7475 51 1 6.0289 -3.3982 3.6453 52 1 4.8235 -2.7160 4.7632 53 1 8.5116 -3.2302 7.6350 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269990095.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:11 Heat of formation + Delta-G solvation = -77.421227 kcal Electronic energy + Delta-G solvation = -31847.281720 eV Core-core repulsion = 27911.418276 eV Total energy + Delta-G solvation = -3935.863443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.64726 -40.41446 -38.67489 -37.54233 -36.33268 -35.48540 -34.05168 -33.19357 -32.70768 -29.87741 -28.45600 -28.10858 -27.79771 -26.58358 -25.02304 -23.79288 -22.52726 -21.66041 -21.15289 -20.41331 -19.63857 -19.02017 -17.85767 -17.71488 -17.50632 -16.68489 -16.40679 -16.28743 -16.15392 -15.47629 -15.39117 -15.18858 -15.03602 -14.93782 -14.64950 -14.51041 -14.44785 -14.09018 -14.00244 -13.62408 -13.52072 -13.36568 -13.17455 -13.07204 -12.94232 -12.89118 -12.83992 -12.25533 -12.19819 -12.01099 -11.98890 -11.90743 -11.80920 -11.77541 -11.69329 -11.50777 -11.47213 -11.30956 -10.84645 -10.79470 -10.12225 -9.67660 -9.20050 -8.32710 -6.35348 1.31352 1.33267 1.46934 1.53704 1.65547 1.93383 2.16334 2.32952 3.03450 3.24488 3.35005 3.72767 3.80339 3.82881 3.91389 3.96584 4.06572 4.09776 4.18229 4.27078 4.34498 4.43308 4.44865 4.48804 4.53938 4.56130 4.62096 4.66807 4.72298 4.81094 4.84362 4.90639 4.92647 4.96067 4.98104 5.03668 5.07565 5.11516 5.13575 5.24512 5.30158 5.31104 5.33252 5.35858 5.43996 5.53538 5.59928 5.63685 5.80200 6.22418 6.27291 6.37671 6.71492 7.20233 7.25787 7.29999 8.83103 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009166 B = 0.004571 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.950113 B = 6124.135396 C = 8478.172455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.142 4.142 4 C 0.136 3.864 5 N -0.590 5.590 6 C 0.062 3.938 7 C 0.166 3.834 8 C -0.152 4.152 9 C 0.500 3.500 10 O -0.586 6.586 11 C -0.108 4.108 12 C -0.116 4.116 13 C -0.130 4.130 14 C 0.096 3.904 15 N -0.599 5.599 16 C 0.514 3.486 17 O -0.549 6.549 18 C -0.115 4.115 19 C 0.012 3.988 20 C -0.528 4.528 21 H 0.048 0.952 22 C 0.015 3.985 23 N -0.944 5.944 24 Si 0.937 3.063 25 H -0.275 1.275 26 H -0.279 1.279 27 H -0.256 1.256 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.089 0.911 50 H 0.100 0.900 51 H 0.015 0.985 52 H 0.002 0.998 53 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.793 -4.892 -21.593 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.122 4.122 3 C -0.199 4.199 4 C 0.013 3.987 5 N -0.320 5.320 6 C -0.060 4.060 7 C 0.080 3.920 8 C -0.193 4.193 9 C 0.289 3.711 10 O -0.468 6.468 11 C -0.146 4.146 12 C -0.153 4.153 13 C -0.168 4.168 14 C -0.025 4.025 15 N -0.331 5.331 16 C 0.305 3.695 17 O -0.430 6.430 18 C -0.155 4.155 19 C -0.026 4.026 20 C -0.566 4.566 21 H 0.066 0.934 22 C -0.183 4.183 23 N -0.585 5.585 24 Si 0.762 3.238 25 H -0.201 1.201 26 H -0.204 1.204 27 H -0.180 1.180 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.114 0.886 47 H 0.108 0.892 48 H 0.098 0.902 49 H 0.108 0.892 50 H 0.119 0.881 51 H 0.033 0.967 52 H 0.020 0.980 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.934 -3.871 -21.415 26.972 hybrid contribution 0.536 0.954 0.780 1.344 sum -15.398 -2.917 -20.636 25.912 Atomic orbital electron populations 1.21698 0.95070 1.00873 1.01185 1.21463 0.96095 0.97004 0.97627 1.21751 1.01290 0.94501 1.02401 1.21356 0.99802 0.79651 0.97885 1.48113 1.19178 1.08139 1.56571 1.23410 1.01383 0.84109 0.97056 1.20856 0.89915 0.94883 0.86313 1.22759 0.98870 0.91659 1.06034 1.21496 0.81121 0.91539 0.76958 1.90659 1.43437 1.67037 1.45670 1.21730 1.03526 0.93571 0.95788 1.21560 0.99478 0.96302 0.97968 1.21898 1.01052 0.98220 0.95654 1.22114 1.02251 0.80981 0.97184 1.47894 1.37237 1.20199 1.27812 1.21113 0.79537 0.84557 0.84269 1.90380 1.69793 1.21506 1.61314 1.21512 0.97781 1.00726 0.95432 1.19161 0.94050 0.94529 0.94903 1.21439 1.18090 1.02488 1.14610 0.93358 1.25785 0.95595 1.02019 0.94889 1.70027 1.24499 1.39217 1.24722 0.85846 0.77430 0.80354 0.80169 1.20067 1.20413 1.17974 0.94491 0.91327 0.94308 0.90025 0.92143 0.90762 0.93257 0.90786 0.93467 0.89900 0.85068 0.84366 0.87964 0.88133 0.90788 0.89442 0.90698 0.91781 0.88626 0.89225 0.90174 0.89239 0.88149 0.96688 0.97969 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.34 71.98 0.60 -2.47 16 2 C -0.10 -2.27 3.13 -10.79 -0.03 -2.30 16 3 C -0.14 -2.70 9.19 71.98 0.66 -2.03 16 4 C 0.14 3.92 5.23 86.38 0.45 4.37 16 5 N -0.59 -16.65 2.09 -818.70 -1.71 -18.36 16 6 C 0.06 1.44 5.58 86.53 0.48 1.92 16 7 C 0.17 3.15 0.87 3.98 0.00 3.15 16 8 C -0.15 -3.04 5.41 30.38 0.16 -2.88 16 9 C 0.50 15.04 6.63 87.94 0.58 15.62 16 10 O -0.59 -22.32 16.46 -3.04 -0.05 -22.37 16 11 C -0.11 -1.21 4.68 30.42 0.14 -1.06 16 12 C -0.12 -0.98 5.79 30.68 0.18 -0.80 16 13 C -0.13 -1.46 6.05 30.67 0.19 -1.27 16 14 C 0.10 1.62 6.09 86.32 0.53 2.14 16 15 N -0.60 -13.80 2.69 -772.49 -2.08 -15.88 16 16 C 0.51 16.75 7.54 87.66 0.66 17.41 16 17 O -0.55 -20.79 11.04 -3.05 -0.03 -20.82 16 18 C -0.11 -4.20 3.99 29.84 0.12 -4.08 16 19 C 0.01 0.56 3.33 29.84 0.10 0.66 16 20 C -0.53 -30.16 9.66 25.60 0.25 -29.91 16 21 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 22 C 0.01 0.87 5.47 84.65 0.46 1.34 16 23 N -0.94 -59.00 13.96 21.45 0.30 -58.70 16 24 Si 0.94 46.51 27.47 68.60 1.88 48.39 16 25 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.26 -12.34 6.54 99.48 0.65 -11.69 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 1.01 6.14 -2.39 -0.01 0.99 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 1.60 7.93 -2.38 -0.02 1.58 16 37 H 0.08 1.48 7.86 -2.39 -0.02 1.46 16 38 H 0.13 3.90 4.55 -91.31 -0.42 3.49 16 39 H 0.14 1.89 7.74 -2.39 -0.02 1.87 16 40 H 0.10 2.06 7.14 -2.38 -0.02 2.04 16 41 H 0.10 0.73 7.95 -2.39 -0.02 0.71 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.07 0.56 7.65 -2.38 -0.02 0.54 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.09 1.65 5.95 -2.39 -0.01 1.63 16 48 H 0.08 1.18 7.42 -2.39 -0.02 1.17 16 49 H 0.09 3.15 7.79 -2.39 -0.02 3.13 16 50 H 0.10 3.33 7.85 -2.38 -0.02 3.32 16 51 H 0.01 0.74 7.16 -2.38 -0.02 0.72 16 52 H 0.00 0.10 7.53 -2.39 -0.02 0.08 16 53 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -76.59 397.95 4.26 -72.33 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.41 Total: 15.61 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.53 Total: -0.20 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -3.49 Total: -92.94 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.08 Total: -43.19 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.39 kcal Total: -76.59 4.26 -72.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990095.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.092 kcal (2) G-P(sol) polarization free energy of solvation -76.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds