Wall clock time and date at job start Tue Mar 31 2020 20:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47383 * 2 1 4 4 C 1.52997 * 109.47430 * 240.00271 * 2 1 3 5 5 N 1.46500 * 109.47117 * 120.00127 * 2 1 3 6 6 C 1.34781 * 119.99884 * 60.00175 * 5 2 1 7 7 O 1.21273 * 119.99952 * 359.97438 * 6 5 2 8 8 C 1.50699 * 119.99562 * 179.97438 * 6 5 2 9 9 H 1.09002 * 115.57061 * 61.74836 * 8 6 5 10 10 C 1.53035 * 117.49889 * 207.44569 * 8 6 5 11 11 C 1.52811 * 117.50353 * 276.03207 * 8 6 5 12 12 C 1.53179 * 117.71531 * 0.14272 * 11 8 6 13 13 C 1.53356 * 108.76967 * 201.12430 * 12 11 8 14 14 N 1.46842 * 108.80781 * 308.68754 * 13 12 11 15 15 C 1.34784 * 120.37969 * 236.87479 * 14 13 12 16 16 O 1.21286 * 119.99708 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00337 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.47482 * 180.02562 * 17 15 14 19 19 C 1.50694 * 109.46982 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00458 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99796 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99944 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99849 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46769 * 89.99857 * 23 21 19 25 25 H 1.48497 * 109.46947 * 209.99741 * 23 21 19 26 26 H 1.48501 * 109.47081 * 330.00068 * 23 21 19 27 27 C 1.46836 * 119.24304 * 56.89954 * 14 13 12 28 28 C 1.53188 * 117.71572 * 144.90364 * 11 8 6 29 29 H 1.09000 * 109.46933 * 299.99872 * 1 2 3 30 30 H 1.08996 * 109.46773 * 59.99656 * 1 2 3 31 31 H 1.08994 * 109.46835 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47258 * 179.97438 * 3 2 1 33 33 H 1.08991 * 109.47116 * 300.00294 * 3 2 1 34 34 H 1.09004 * 109.46502 * 60.00069 * 3 2 1 35 35 H 1.09003 * 109.46709 * 300.00251 * 4 2 1 36 36 H 1.09000 * 109.47039 * 59.99515 * 4 2 1 37 37 H 1.08995 * 109.47709 * 179.97438 * 4 2 1 38 38 H 0.96999 * 119.99994 * 239.99872 * 5 2 1 39 39 H 1.08994 * 117.50518 * 0.02562 * 10 8 6 40 40 H 1.09001 * 117.53177 * 214.94041 * 10 8 6 41 41 H 1.09004 * 109.59046 * 81.33822 * 12 11 8 42 42 H 1.09007 * 109.58773 * 320.90408 * 12 11 8 43 43 H 1.08992 * 109.58004 * 188.88355 * 13 12 11 44 44 H 1.08999 * 109.57791 * 68.48354 * 13 12 11 45 45 H 1.09008 * 109.47104 * 300.00125 * 17 15 14 46 46 H 1.08999 * 109.47049 * 59.99654 * 17 15 14 47 47 H 1.08997 * 109.46541 * 299.99983 * 18 17 15 48 48 H 1.08996 * 109.46699 * 60.00174 * 18 17 15 49 49 H 0.97004 * 119.99584 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.58171 * 62.89767 * 27 14 13 51 51 H 1.08998 * 109.58175 * 183.30313 * 27 14 13 52 52 H 1.09003 * 109.58599 * 39.09490 * 28 11 8 53 53 H 1.09002 * 109.70455 * 278.73851 * 28 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9810 1.4094 7 8 0.9952 -2.5702 0.6113 8 6 2.1956 -2.6916 2.6395 9 1 1.8650 -2.2755 3.5913 10 6 2.3740 -4.2091 2.5557 11 6 3.5985 -3.2947 2.5822 12 6 4.3918 -3.1307 1.2822 13 6 5.4831 -4.2070 1.2310 14 7 6.2414 -4.1724 2.4880 15 6 7.5766 -3.9882 2.4737 16 8 8.1583 -3.8494 1.4186 17 6 8.3465 -3.9547 3.7687 18 6 9.8314 -3.7336 3.4737 19 6 10.6012 -3.6994 4.7688 20 1 10.0832 -3.8235 5.7083 21 6 11.9670 -3.5109 4.7542 22 7 12.6388 -3.4816 5.8844 23 14 12.8630 -3.2970 3.1291 24 1 12.9100 -1.8554 2.7758 25 1 14.2466 -3.8214 3.2540 26 1 12.1445 -4.0441 2.0656 27 6 5.5287 -4.3413 3.7606 28 6 4.4384 -3.2679 3.8631 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 -1.7488 -1.2492 36 1 1.6767 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 2.5760 -0.2193 1.8346 39 1 2.1281 -4.6934 1.6107 40 1 2.1614 -4.7918 3.4520 41 1 4.8516 -2.1427 1.2567 42 1 3.7234 -3.2473 0.4290 43 1 6.1530 -4.0084 0.3945 44 1 5.0234 -5.1877 1.1086 45 1 7.9750 -3.1407 4.3914 46 1 8.2169 -4.9014 4.2930 47 1 10.2031 -4.5472 2.8509 48 1 9.9606 -2.7866 2.9496 49 1 13.5997 -3.3486 5.8741 50 1 5.0719 -5.3304 3.7950 51 1 6.2288 -4.2311 4.5888 52 1 3.8008 -3.4754 4.7225 53 1 4.9004 -2.2875 3.9791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271768572.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:37 Heat of formation + Delta-G solvation = -87.869797 kcal Electronic energy + Delta-G solvation = -30086.366184 eV Core-core repulsion = 26150.049657 eV Total energy + Delta-G solvation = -3936.316527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.75881 -40.92662 -39.29517 -37.44536 -36.19823 -35.58201 -33.51638 -32.93583 -32.16713 -30.85225 -28.28389 -28.23123 -28.04667 -25.41945 -24.87215 -24.49083 -22.85536 -21.47467 -20.77813 -20.46374 -19.45910 -18.93012 -18.16804 -17.70471 -16.84887 -16.75935 -16.63580 -16.36526 -16.14973 -15.68208 -15.21559 -15.19351 -14.90564 -14.73991 -14.66747 -14.55154 -14.53813 -14.07274 -13.84507 -13.41035 -13.36405 -13.25564 -13.06242 -13.03181 -12.96215 -12.89793 -12.62461 -12.55080 -12.24386 -12.13291 -12.02188 -11.98886 -11.96674 -11.77848 -11.64718 -11.37290 -11.14309 -10.93086 -10.77099 -10.67913 -10.48288 -10.05009 -9.57389 -8.30640 -6.32817 1.32731 1.35266 1.50199 1.58978 1.67904 2.06054 2.17577 2.35405 2.73096 3.05145 3.51243 3.60551 3.72119 3.82063 3.85571 3.89912 3.97979 4.09478 4.11365 4.18497 4.30431 4.36186 4.46635 4.49681 4.54911 4.63760 4.66140 4.69299 4.73438 4.78809 4.81523 4.83453 4.90489 4.93891 4.95607 4.97178 4.98533 5.04430 5.12259 5.18698 5.22964 5.31230 5.32305 5.34972 5.36699 5.44969 5.61752 5.64577 5.65664 6.24570 6.42327 6.64047 6.73400 7.24572 7.32519 7.32877 8.84765 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.002374 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.251814 B =11791.284491 C =12456.431562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.164 3.836 3 C -0.150 4.150 4 C -0.161 4.161 5 N -0.712 5.712 6 C 0.544 3.456 7 O -0.571 6.571 8 C -0.178 4.178 9 H 0.153 0.847 10 C -0.134 4.134 11 C -0.095 4.095 12 C -0.087 4.087 13 C 0.115 3.885 14 N -0.608 5.608 15 C 0.512 3.488 16 O -0.591 6.591 17 C -0.112 4.112 18 C 0.005 3.995 19 C -0.525 4.525 20 H 0.054 0.946 21 C 0.015 3.985 22 N -0.942 5.942 23 Si 0.935 3.065 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.264 1.264 27 C 0.100 3.900 28 C -0.091 4.091 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.411 0.589 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.006 0.994 48 H 0.006 0.994 49 H 0.267 0.733 50 H 0.089 0.911 51 H 0.098 0.902 52 H 0.111 0.889 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.293 6.347 -7.214 30.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.079 3.921 3 C -0.208 4.208 4 C -0.220 4.220 5 N -0.364 5.364 6 C 0.332 3.668 7 O -0.450 6.450 8 C -0.199 4.199 9 H 0.170 0.830 10 C -0.171 4.171 11 C -0.096 4.096 12 C -0.125 4.125 13 C -0.008 4.008 14 N -0.341 5.341 15 C 0.302 3.698 16 O -0.471 6.471 17 C -0.152 4.152 18 C -0.033 4.033 19 C -0.563 4.563 20 H 0.072 0.928 21 C -0.183 4.183 22 N -0.582 5.582 23 Si 0.760 3.240 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.189 1.189 27 C -0.021 4.021 28 C -0.129 4.129 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.247 0.753 39 H 0.105 0.895 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.025 0.975 48 H 0.025 0.975 49 H 0.076 0.924 50 H 0.107 0.893 51 H 0.117 0.883 52 H 0.129 0.871 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.326 6.041 -8.273 31.064 hybrid contribution 1.071 0.289 -0.463 1.202 sum -28.256 6.330 -8.736 30.245 Atomic orbital electron populations 1.22158 0.94463 1.02432 1.02556 1.20420 0.94210 0.92844 0.84639 1.22056 1.01799 0.92912 1.04025 1.22187 1.00720 1.01474 0.97569 1.46145 1.53191 1.11716 1.25328 1.19977 0.78833 0.81777 0.86223 1.90634 1.39446 1.67154 1.47814 1.22460 1.01053 0.97888 0.98513 0.82968 1.23133 0.98782 0.90657 1.04526 1.21406 0.87732 1.03892 0.96536 1.21399 0.96305 0.98798 0.95992 1.21481 0.93096 0.99558 0.86627 1.48152 1.05796 1.71533 1.08610 1.21312 0.82515 0.74396 0.91562 1.90623 1.69776 1.51840 1.34895 1.21497 0.94986 1.04694 0.93985 1.19226 0.92854 0.96063 0.95151 1.21411 0.92778 1.48866 0.93289 0.92792 1.25765 0.98712 0.94572 0.99255 1.70015 1.08499 1.51908 1.27827 0.85882 0.77927 0.79254 0.80962 1.19373 1.20399 1.18864 1.22042 0.95131 1.00368 0.84600 1.21592 0.96303 0.99572 0.95421 0.92117 0.90823 0.93001 0.91774 0.89945 0.90846 0.92928 0.90808 0.93048 0.75326 0.89541 0.85519 0.91874 0.91468 0.91525 0.90315 0.87767 0.88005 0.97545 0.97527 0.92411 0.89254 0.88329 0.87115 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.40 71.98 0.60 -1.68 16 2 C 0.16 2.22 1.06 3.60 0.00 2.23 16 3 C -0.15 -1.33 8.59 71.98 0.62 -0.71 16 4 C -0.16 -2.69 8.40 71.98 0.60 -2.09 16 5 N -0.71 -9.58 5.11 -422.92 -2.16 -11.74 16 6 C 0.54 9.55 5.51 87.66 0.48 10.03 16 7 O -0.57 -14.20 12.82 -3.01 -0.04 -14.24 16 8 C -0.18 -2.26 5.90 -11.59 -0.07 -2.33 16 9 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 10 C -0.13 -1.75 9.45 30.56 0.29 -1.46 16 11 C -0.09 -1.31 1.94 -52.17 -0.10 -1.41 16 12 C -0.09 -1.65 5.23 30.77 0.16 -1.49 16 13 C 0.11 2.72 6.44 86.43 0.56 3.27 16 14 N -0.61 -15.54 2.92 -818.73 -2.39 -17.93 16 15 C 0.51 18.31 7.69 87.65 0.67 18.98 16 16 O -0.59 -26.55 15.36 -3.05 -0.05 -26.60 16 17 C -0.11 -4.15 3.97 29.85 0.12 -4.03 16 18 C 0.01 0.25 3.33 29.85 0.10 0.35 16 19 C -0.53 -29.89 9.66 25.60 0.25 -29.64 16 20 H 0.05 3.20 7.99 -2.91 -0.02 3.17 16 21 C 0.01 0.87 5.47 84.66 0.46 1.33 16 22 N -0.94 -58.38 13.96 21.45 0.30 -58.08 16 23 Si 0.93 46.72 27.47 68.60 1.88 48.60 16 24 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.26 -13.25 6.54 99.48 0.65 -12.60 16 27 C 0.10 1.69 6.35 86.43 0.55 2.24 16 28 C -0.09 -1.10 5.83 30.78 0.18 -0.92 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 1.05 6.17 -2.39 -0.01 1.04 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.05 1.17 6.17 -2.39 -0.01 1.15 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.41 3.84 8.47 -92.71 -0.79 3.06 16 39 H 0.09 1.49 7.93 -2.39 -0.02 1.47 16 40 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.38 7.36 -2.38 -0.02 1.37 16 43 H 0.07 1.95 6.96 -2.39 -0.02 1.93 16 44 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.10 3.44 7.74 -2.38 -0.02 3.42 16 46 H 0.10 3.42 7.87 -2.39 -0.02 3.40 16 47 H 0.01 0.33 7.16 -2.39 -0.02 0.31 16 48 H 0.01 0.33 7.53 -2.39 -0.02 0.31 16 49 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 50 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.10 1.67 5.86 -2.39 -0.01 1.66 16 52 H 0.11 0.74 8.10 -2.39 -0.02 0.72 16 53 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -77.75 411.08 3.08 -74.67 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.04 Total: 12.65 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 5.48 Total: -7.33 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -4.25 Total: -87.75 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.09 Total: -40.84 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.88 Total: 48.60 kcal Total: -77.75 3.08 -74.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271768572.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.198 kcal (2) G-P(sol) polarization free energy of solvation -77.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds