Wall clock time and date at job start Tue Mar 31 2020 20:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 120.00449 * 2 1 4 4 C 1.52999 * 109.47370 * 231.73324 * 3 2 1 5 5 C 1.52996 * 109.47342 * 111.72519 * 3 2 1 6 6 C 1.53001 * 109.47205 * 64.11792 * 5 3 2 7 7 O 1.42897 * 109.47557 * 185.03064 * 6 5 3 8 8 C 1.42894 * 113.99948 * 179.97438 * 7 6 5 9 9 C 1.50707 * 109.46847 * 351.72653 * 3 2 1 10 10 O 1.21282 * 119.99529 * 119.91058 * 9 3 2 11 11 N 1.34772 * 119.99968 * 299.91556 * 9 3 2 12 12 C 1.45729 * 117.76168 * 354.92906 * 11 9 3 13 13 C 1.52456 * 109.88671 * 142.10484 * 12 11 9 14 14 C 1.52939 * 108.68094 * 53.29106 * 13 12 11 15 15 C 1.52926 * 109.79651 * 294.26142 * 14 13 12 16 16 H 1.08999 * 111.26242 * 293.34768 * 15 14 13 17 17 C 1.44200 * 117.75587 * 175.20196 * 11 9 3 18 18 H 1.08998 * 109.22309 * 332.57493 * 17 11 9 19 19 C 1.54058 * 111.76509 * 93.47943 * 17 11 9 20 20 C 1.54050 * 103.74495 * 153.24545 * 19 17 11 21 21 N 1.46878 * 107.71148 * 342.87386 * 20 19 17 22 22 C 1.36941 * 125.58675 * 177.01500 * 21 20 19 23 23 H 1.08000 * 120.00073 * 180.02562 * 22 21 20 24 24 C 1.38811 * 119.99813 * 0.02879 * 22 21 20 25 25 N 1.31620 * 120.00012 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00321 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46603 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47238 * 119.99602 * 26 24 22 29 29 H 1.48500 * 109.46965 * 239.99925 * 26 24 22 30 30 H 1.08002 * 119.99841 * 1.97987 * 1 2 3 31 31 H 1.08000 * 120.00409 * 181.98054 * 1 2 3 32 32 H 1.07999 * 119.99932 * 179.97438 * 2 1 3 33 33 H 1.09006 * 109.46995 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.47514 * 59.99498 * 4 3 2 35 35 H 1.09006 * 109.46573 * 299.99380 * 4 3 2 36 36 H 1.08999 * 109.46988 * 184.11671 * 5 3 2 37 37 H 1.08996 * 109.47521 * 304.11847 * 5 3 2 38 38 H 1.09003 * 109.47125 * 305.03908 * 6 5 3 39 39 H 1.09003 * 109.46786 * 65.03228 * 6 5 3 40 40 H 1.08993 * 109.47785 * 300.00052 * 8 7 6 41 41 H 1.08999 * 109.47418 * 60.00729 * 8 7 6 42 42 H 1.09010 * 109.46966 * 180.02562 * 8 7 6 43 43 H 1.08993 * 109.46287 * 261.16539 * 12 11 9 44 44 H 1.09004 * 109.45008 * 21.11656 * 12 11 9 45 45 H 1.09000 * 109.32666 * 293.65802 * 13 12 11 46 46 H 1.08991 * 109.91549 * 173.27791 * 13 12 11 47 47 H 1.09007 * 109.41550 * 174.16491 * 14 13 12 48 48 H 1.09000 * 109.41537 * 54.36285 * 14 13 12 49 49 H 1.08999 * 110.57147 * 271.81094 * 19 17 11 50 50 H 1.09004 * 110.57574 * 34.68136 * 19 17 11 51 51 H 1.09007 * 109.81312 * 102.42675 * 20 19 17 52 52 H 1.09005 * 109.81476 * 223.25718 * 20 19 17 53 53 H 0.96999 * 120.00508 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0923 1.3000 -1.1325 5 6 2.7810 1.4797 1.3400 6 6 3.8346 0.3821 1.5013 7 8 4.4232 0.4738 2.8002 8 6 5.4255 -0.5122 3.0550 9 6 1.0970 2.4431 -0.2045 10 8 0.9913 3.3078 0.6394 11 7 0.3503 2.5000 -1.3249 12 6 0.5963 1.5000 -2.3561 13 6 -0.7225 1.0769 -2.9933 14 6 -1.4610 2.3291 -3.4683 15 6 -1.8610 3.1825 -2.2641 16 1 -2.6066 2.6763 -1.6510 17 6 -0.6334 3.5497 -1.4238 18 1 -0.9568 3.8340 -0.4225 19 6 -0.0742 4.7903 -2.1460 20 6 -1.3238 5.4529 -2.7563 21 7 -2.4015 4.4549 -2.7609 22 6 -3.6892 4.6745 -3.1721 23 1 -4.4116 3.8724 -3.1365 24 6 -4.0659 5.9279 -3.6346 25 7 -3.1856 6.9054 -3.6776 26 14 -5.8225 6.2277 -4.1948 27 1 -6.6092 4.9768 -4.0475 28 1 -6.4315 7.2968 -3.3635 29 1 -5.8229 6.6474 -5.6193 30 1 -0.5400 0.9348 -0.0323 31 1 -0.5401 -0.9347 0.0323 32 1 1.8500 -0.9353 0.0004 33 1 3.6376 2.2438 -1.1322 34 1 2.5811 1.1755 -2.0872 35 1 3.7913 0.4768 -0.9846 36 1 3.2657 2.4555 1.3681 37 1 2.0568 1.4102 2.1517 38 1 3.3635 -0.5939 1.3839 39 1 4.6074 0.5060 0.7427 40 1 4.9871 -1.5065 2.9702 41 1 6.2315 -0.4072 2.3287 42 1 5.8225 -0.3752 4.0610 43 1 1.2336 1.9264 -3.1307 44 1 1.0920 0.6362 -1.9131 45 1 -1.3284 0.5526 -2.2543 46 1 -0.5310 0.4205 -3.8421 47 1 -2.3557 2.0356 -4.0177 48 1 -0.8090 2.9081 -4.1223 49 1 0.4074 5.4624 -1.4357 50 1 0.6241 4.4953 -2.9294 51 1 -1.6184 6.3119 -2.1533 52 1 -1.1114 5.7732 -3.7764 53 1 -3.4488 7.7814 -4.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272034622.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:57 Heat of formation + Delta-G solvation = -32.572004 kcal Electronic energy + Delta-G solvation = -31668.445149 eV Core-core repulsion = 27734.526514 eV Total energy + Delta-G solvation = -3933.918635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.52040 -40.06301 -38.82847 -37.58764 -36.63981 -34.19215 -33.92270 -32.65253 -31.05768 -30.34102 -29.47221 -27.25363 -26.81726 -26.22382 -25.15140 -23.37641 -22.81385 -22.61213 -21.99115 -19.89126 -19.46443 -18.85527 -18.01340 -17.58291 -17.07660 -16.82063 -16.75399 -16.44570 -16.10782 -15.79221 -15.49662 -15.32013 -15.07364 -14.95628 -14.72498 -14.26103 -14.15629 -14.08833 -13.77972 -13.53230 -13.43568 -13.09525 -13.02356 -12.83017 -12.74359 -12.65608 -12.54033 -12.47958 -12.31936 -12.01192 -11.95326 -11.90763 -11.86571 -11.65203 -11.57226 -11.51357 -11.21456 -10.73633 -10.66751 -10.49570 -10.10636 -9.58917 -8.93215 -7.86212 -5.23379 1.28181 1.44224 1.45838 1.54890 1.55972 1.90002 2.48062 2.88538 3.29094 3.33144 3.57472 3.67870 3.81050 3.85455 3.95782 4.00141 4.10728 4.11356 4.22181 4.27379 4.29396 4.32872 4.42706 4.54686 4.57056 4.58517 4.60720 4.61443 4.64249 4.80507 4.81652 4.83950 4.88998 4.91528 4.94672 4.99442 5.06271 5.07362 5.17971 5.23954 5.31871 5.35948 5.41134 5.53428 5.60467 5.61751 5.68711 5.70573 5.77705 6.16877 6.31327 6.39538 7.06303 7.14116 7.73962 8.38672 9.24111 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.002799 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.095660 B =10000.808458 C =10383.574799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.147 4.147 3 C -0.038 4.038 4 C -0.163 4.163 5 C -0.086 4.086 6 C 0.066 3.934 7 O -0.426 6.426 8 C 0.026 3.974 9 C 0.511 3.489 10 O -0.585 6.585 11 N -0.579 5.579 12 C 0.087 3.913 13 C -0.122 4.122 14 C -0.120 4.120 15 C 0.160 3.840 16 H 0.046 0.954 17 C 0.155 3.845 18 H 0.057 0.943 19 C -0.135 4.135 20 C 0.192 3.808 21 N -0.615 5.615 22 C -0.233 4.233 23 H 0.086 0.914 24 C -0.068 4.068 25 N -0.953 5.953 26 Si 0.980 3.020 27 H -0.263 1.263 28 H -0.296 1.296 29 H -0.291 1.291 30 H 0.072 0.928 31 H 0.130 0.870 32 H 0.163 0.837 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.135 0.865 45 H 0.073 0.927 46 H 0.106 0.894 47 H 0.052 0.948 48 H 0.046 0.954 49 H 0.056 0.944 50 H 0.074 0.926 51 H 0.009 0.991 52 H 0.009 0.991 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.306 -22.797 4.906 29.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.165 4.165 3 C -0.041 4.041 4 C -0.219 4.219 5 C -0.125 4.125 6 C -0.010 4.010 7 O -0.346 6.346 8 C -0.070 4.070 9 C 0.301 3.699 10 O -0.465 6.465 11 N -0.309 5.309 12 C -0.034 4.034 13 C -0.160 4.160 14 C -0.160 4.160 15 C 0.053 3.947 16 H 0.064 0.936 17 C 0.049 3.951 18 H 0.075 0.925 19 C -0.174 4.174 20 C 0.066 3.934 21 N -0.339 5.339 22 C -0.362 4.362 23 H 0.103 0.897 24 C -0.261 4.261 25 N -0.602 5.602 26 Si 0.808 3.192 27 H -0.187 1.187 28 H -0.223 1.223 29 H -0.218 1.218 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.181 0.819 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.152 0.848 45 H 0.091 0.909 46 H 0.124 0.876 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.093 0.907 51 H 0.028 0.972 52 H 0.028 0.972 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.028 -22.033 5.363 28.357 hybrid contribution -1.283 1.440 -0.345 1.959 sum 15.744 -20.593 5.018 26.404 Atomic orbital electron populations 1.24296 0.96638 1.02736 0.98722 1.22817 0.95439 0.96736 1.01519 1.19834 0.94833 0.91466 0.97945 1.22437 0.98230 1.04094 0.97189 1.21159 0.97290 0.99155 0.94863 1.22682 0.95260 0.98487 0.84576 1.87851 1.56138 1.56028 1.34569 1.22920 0.90400 0.91270 1.02427 1.21294 0.81114 0.86950 0.80583 1.90687 1.68336 1.42232 1.45208 1.47049 1.35554 1.29652 1.18614 1.22387 0.98477 0.92219 0.90300 1.21733 0.95762 0.96801 1.01742 1.21900 0.99921 0.96492 0.97646 1.20941 0.92299 0.87645 0.93864 0.93584 1.20580 0.88928 0.87130 0.98484 0.92505 1.22779 0.98017 0.97269 0.99366 1.20705 0.85402 0.90755 0.96515 1.44581 1.07145 1.06816 1.75380 1.19428 0.86052 0.96052 1.34691 0.89656 1.25686 1.02056 0.95931 1.02422 1.70212 1.34319 1.02176 1.53494 0.84982 0.79368 0.77847 0.76973 1.18678 1.22283 1.21828 0.90966 0.85229 0.81947 0.92695 0.88994 0.87770 0.92640 0.92884 0.90744 0.90972 0.92672 0.92815 0.89227 0.91109 0.84754 0.90865 0.87586 0.92944 0.93469 0.92539 0.90749 0.97236 0.97244 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 11.24 67.78 0.76 -2.46 16 2 C -0.15 -2.05 6.28 25.65 0.16 -1.89 16 3 C -0.04 -0.73 0.51 -53.68 -0.03 -0.76 16 4 C -0.16 -2.15 7.62 71.98 0.55 -1.61 16 5 C -0.09 -1.91 3.96 30.59 0.12 -1.79 16 6 C 0.07 0.99 5.19 71.98 0.37 1.36 16 7 O -0.43 -8.35 10.70 -148.98 -1.59 -9.95 16 8 C 0.03 0.29 11.01 113.37 1.25 1.54 16 9 C 0.51 15.44 5.02 87.66 0.44 15.88 16 10 O -0.58 -23.70 15.27 -3.04 -0.05 -23.75 16 11 N -0.58 -16.90 1.82 -803.62 -1.46 -18.36 16 12 C 0.09 1.75 3.39 86.34 0.29 2.04 16 13 C -0.12 -2.62 5.99 30.39 0.18 -2.44 16 14 C -0.12 -3.98 5.31 30.55 0.16 -3.81 16 15 C 0.16 6.57 3.23 44.97 0.15 6.72 16 16 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 17 C 0.15 6.02 2.73 45.86 0.13 6.15 16 18 H 0.06 2.58 7.18 -2.39 -0.02 2.56 16 19 C -0.13 -5.69 6.39 31.31 0.20 -5.49 16 20 C 0.19 10.11 5.38 86.66 0.47 10.58 16 21 N -0.61 -32.15 2.93 -673.79 -1.97 -34.12 16 22 C -0.23 -13.17 10.28 84.03 0.86 -12.31 16 23 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 24 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 25 N -0.95 -58.94 10.29 21.65 0.22 -58.72 16 26 Si 0.98 46.53 29.55 68.60 2.03 48.56 16 27 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 28 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 29 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 30 H 0.07 1.82 5.55 -2.91 -0.02 1.81 16 31 H 0.13 1.60 8.06 -2.91 -0.02 1.57 16 32 H 0.16 1.02 7.30 -2.91 -0.02 1.00 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.09 1.05 4.27 -2.39 -0.01 1.04 16 35 H 0.10 0.70 6.47 -2.38 -0.02 0.68 16 36 H 0.05 1.48 7.99 -2.39 -0.02 1.46 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 0.76 6.73 -2.39 -0.02 0.75 16 39 H 0.07 0.79 6.66 -2.39 -0.02 0.77 16 40 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.07 1.34 7.56 -2.39 -0.02 1.32 16 44 H 0.14 1.87 2.96 -2.39 -0.01 1.86 16 45 H 0.07 1.52 7.26 -2.39 -0.02 1.50 16 46 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 48 H 0.05 1.70 7.98 -2.39 -0.02 1.68 16 49 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 51 H 0.01 0.57 7.25 -2.38 -0.02 0.55 16 52 H 0.01 0.54 7.60 -2.38 -0.02 0.52 16 53 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -77.87 389.25 4.59 -73.28 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.88 Total: 14.83 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.53 Total: 8.22 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -3.21 Total: -111.20 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.64 Total: -33.70 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -77.87 4.59 -73.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272034622.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.711 kcal (2) G-P(sol) polarization free energy of solvation -77.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds