Wall clock time and date at job start Tue Mar 31 2020 20:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00313 * 2 1 4 4 C 1.52999 * 109.47039 * 7.98932 * 3 2 1 5 5 C 1.52997 * 109.47357 * 247.98699 * 3 2 1 6 6 C 1.53003 * 109.46899 * 61.07372 * 5 3 2 7 7 O 1.42897 * 109.46992 * 177.67896 * 6 5 3 8 8 C 1.42906 * 114.00144 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47017 * 127.98645 * 3 2 1 10 10 O 1.21281 * 119.99751 * 117.58639 * 9 3 2 11 11 N 1.34772 * 120.00113 * 297.59079 * 9 3 2 12 12 C 1.47861 * 122.22926 * 4.83720 * 11 9 3 13 13 C 1.53137 * 110.81507 * 127.49047 * 12 11 9 14 14 C 1.53875 * 111.47357 * 48.78224 * 13 12 11 15 15 C 1.51085 * 107.33992 * 302.92613 * 14 13 12 16 16 H 1.09000 * 108.74281 * 308.52387 * 15 14 13 17 17 C 1.45727 * 122.23090 * 185.13028 * 11 9 3 18 18 H 1.09003 * 111.06607 * 119.45699 * 17 11 9 19 19 C 1.53430 * 116.37716 * 350.09618 * 17 11 9 20 20 C 1.55477 * 101.66733 * 207.26258 * 19 17 11 21 21 N 1.45020 * 119.18582 * 183.87128 * 15 14 13 22 22 C 1.36937 * 126.55916 * 28.81871 * 21 15 14 23 23 H 1.07998 * 120.00020 * 4.58344 * 22 21 15 24 24 C 1.38820 * 120.00301 * 184.58757 * 22 21 15 25 25 N 1.31619 * 119.99621 * 6.29087 * 24 22 21 26 26 Si 1.86799 * 120.00169 * 186.29509 * 24 22 21 27 27 H 1.48500 * 109.46955 * 94.98469 * 26 24 22 28 28 H 1.48495 * 109.46888 * 214.98572 * 26 24 22 29 29 H 1.48500 * 109.47172 * 334.98376 * 26 24 22 30 30 H 1.08005 * 119.99370 * 5.56654 * 1 2 3 31 31 H 1.07998 * 120.00389 * 185.55749 * 1 2 3 32 32 H 1.08002 * 119.99203 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47094 * 304.15010 * 4 3 2 34 34 H 1.08998 * 109.47415 * 64.15200 * 4 3 2 35 35 H 1.09005 * 109.47028 * 184.15507 * 4 3 2 36 36 H 1.09004 * 109.47113 * 301.08437 * 5 3 2 37 37 H 1.08993 * 109.47597 * 181.08020 * 5 3 2 38 38 H 1.09000 * 109.46696 * 57.68789 * 6 5 3 39 39 H 1.08994 * 109.47431 * 297.68462 * 6 5 3 40 40 H 1.08999 * 109.47045 * 180.02562 * 8 7 6 41 41 H 1.09003 * 109.46799 * 300.00380 * 8 7 6 42 42 H 1.09001 * 109.46682 * 60.00288 * 8 7 6 43 43 H 1.08996 * 109.16039 * 247.95055 * 12 11 9 44 44 H 1.08996 * 109.16089 * 7.13752 * 12 11 9 45 45 H 1.09002 * 109.21699 * 288.19146 * 13 12 11 46 46 H 1.09008 * 108.98041 * 169.21766 * 13 12 11 47 47 H 1.08995 * 109.88087 * 183.47174 * 14 13 12 48 48 H 1.08997 * 109.87992 * 62.38766 * 14 13 12 49 49 H 1.09005 * 110.98543 * 325.35418 * 19 17 11 50 50 H 1.08998 * 110.99052 * 89.16724 * 19 17 11 51 51 H 1.08998 * 109.95630 * 263.21734 * 20 19 17 52 52 H 1.09002 * 109.96059 * 141.98155 * 20 19 17 53 53 H 0.96993 * 119.99874 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0815 2.4610 0.2005 5 6 2.7868 1.4764 -1.3373 6 6 1.7608 1.5055 -2.4719 7 8 2.4316 1.7197 -3.7153 8 6 1.5592 1.7646 -4.8463 9 6 3.0721 1.3027 1.1199 10 8 4.2562 1.3819 0.8697 11 7 2.6582 1.2126 2.3993 12 6 1.2378 1.0087 2.7561 13 6 1.0805 -0.1844 3.7031 14 6 2.0738 -0.1075 4.8758 15 6 3.4626 -0.0345 4.2855 16 1 3.5820 -0.8475 3.5694 17 6 3.5798 1.3158 3.5234 18 1 3.3221 2.1583 4.1653 19 6 5.0756 1.2976 3.1824 20 6 5.6884 0.7139 4.4867 21 7 4.6095 -0.0386 5.1731 22 6 4.6827 -0.6252 6.4084 23 1 3.8550 -1.2126 6.7772 24 6 5.8210 -0.4646 7.1866 25 7 6.7773 0.3499 6.7936 26 14 5.9955 -1.4046 8.7914 27 1 6.7647 -2.6523 8.5531 28 1 6.7123 -0.5628 9.7826 29 1 4.6481 -1.7460 9.3141 30 1 -0.5399 0.9310 -0.0907 31 1 -0.5401 -0.9309 0.0906 32 1 1.8499 -0.9354 0.0004 33 1 0.3091 2.4188 -0.5674 34 1 0.6203 2.3794 1.1847 35 1 1.6156 3.4084 0.1269 36 1 3.4725 0.6427 -1.4890 37 1 3.3474 2.4111 -1.3301 38 1 1.0504 2.3138 -2.2985 39 1 1.2286 0.5549 -2.5051 40 1 2.1449 1.9297 -5.7506 41 1 1.0225 0.8194 -4.9289 42 1 0.8448 2.5784 -4.7219 43 1 0.8585 1.9075 3.2421 44 1 0.6637 0.8247 1.8480 45 1 1.2539 -1.1072 3.1495 46 1 0.0642 -0.1926 4.0972 47 1 1.9820 -0.9975 5.4983 48 1 1.8765 0.7841 5.4709 49 1 5.2742 0.6454 2.3319 50 1 5.4455 2.3055 2.9943 51 1 6.0426 1.5227 5.1257 52 1 6.5127 0.0436 4.2430 53 1 7.5728 0.4618 7.3372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272034623.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:01 Heat of formation + Delta-G solvation = -33.667191 kcal Electronic energy + Delta-G solvation = -31604.955688 eV Core-core repulsion = 27670.989562 eV Total energy + Delta-G solvation = -3933.966126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.14524 -40.01763 -38.78722 -37.68147 -36.71970 -34.21230 -33.83460 -32.38224 -31.01268 -29.85377 -29.41829 -27.49449 -26.89996 -26.35569 -25.32230 -23.09235 -22.83480 -22.33083 -21.56340 -20.79476 -19.12462 -18.56000 -17.76078 -17.38932 -17.13349 -16.95722 -16.71008 -16.43337 -16.07515 -15.79685 -15.58659 -15.51801 -15.21281 -14.93111 -14.69419 -14.25921 -14.20178 -13.92216 -13.83862 -13.62145 -13.30476 -13.15689 -12.92016 -12.75446 -12.71977 -12.57747 -12.44869 -12.35200 -12.19148 -12.05488 -11.89047 -11.83580 -11.75467 -11.72208 -11.62994 -11.58850 -11.40448 -10.80397 -10.63105 -10.45095 -9.85138 -9.54004 -8.91561 -7.82866 -5.23502 1.24373 1.44188 1.46990 1.55714 1.67484 1.93708 2.49280 2.85280 3.31889 3.34365 3.53579 3.70613 3.84385 3.87533 3.99385 4.01725 4.08898 4.19263 4.21676 4.26110 4.28423 4.33956 4.44389 4.52825 4.55761 4.58012 4.58601 4.59915 4.65075 4.75701 4.80572 4.86413 4.88855 4.92342 5.00110 5.01580 5.05672 5.09374 5.14986 5.19989 5.27181 5.35498 5.40850 5.48093 5.54812 5.63524 5.70743 5.72943 5.75973 6.18299 6.28769 6.55212 7.03379 7.22587 7.74129 8.44791 9.26001 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023301 B = 0.002924 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.366231 B = 9574.483523 C =10309.177658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.167 4.167 3 C -0.034 4.034 4 C -0.159 4.159 5 C -0.088 4.088 6 C 0.068 3.932 7 O -0.425 6.425 8 C 0.026 3.974 9 C 0.521 3.479 10 O -0.576 6.576 11 N -0.592 5.592 12 C 0.086 3.914 13 C -0.119 4.119 14 C -0.111 4.111 15 C 0.154 3.846 16 H -0.004 1.004 17 C 0.131 3.869 18 H 0.079 0.921 19 C -0.115 4.115 20 C 0.175 3.825 21 N -0.611 5.611 22 C -0.232 4.232 23 H 0.089 0.911 24 C -0.071 4.071 25 N -0.953 5.953 26 Si 0.979 3.021 27 H -0.292 1.292 28 H -0.295 1.295 29 H -0.261 1.261 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.129 0.871 45 H 0.061 0.939 46 H 0.112 0.888 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.060 0.940 51 H 0.040 0.960 52 H -0.011 1.011 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.883 3.274 -18.570 29.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C -0.038 4.038 4 C -0.215 4.215 5 C -0.126 4.126 6 C -0.008 4.008 7 O -0.345 6.345 8 C -0.070 4.070 9 C 0.310 3.690 10 O -0.456 6.456 11 N -0.324 5.324 12 C -0.035 4.035 13 C -0.157 4.157 14 C -0.149 4.149 15 C 0.046 3.954 16 H 0.014 0.986 17 C 0.025 3.975 18 H 0.097 0.903 19 C -0.154 4.154 20 C 0.050 3.950 21 N -0.335 5.335 22 C -0.361 4.361 23 H 0.106 0.894 24 C -0.263 4.263 25 N -0.602 5.602 26 Si 0.808 3.192 27 H -0.219 1.219 28 H -0.222 1.222 29 H -0.185 1.185 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.147 0.853 45 H 0.079 0.921 46 H 0.130 0.870 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.079 0.921 51 H 0.058 0.942 52 H 0.007 0.993 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -21.950 3.314 -18.549 28.928 hybrid contribution 1.398 -0.626 1.119 1.897 sum -20.551 2.687 -17.430 27.081 Atomic orbital electron populations 1.24351 0.94353 1.04722 0.96038 1.22562 0.96871 0.95544 1.03571 1.19693 0.94761 0.97548 0.91751 1.22358 0.98670 0.95496 1.04998 1.21150 0.97574 1.02389 0.91475 1.22616 0.94224 1.01363 0.82559 1.87850 1.36352 1.93984 1.16313 1.22925 0.94815 1.01138 0.88135 1.21018 0.89337 0.74956 0.83698 1.90677 1.19583 1.51506 1.83826 1.47993 1.09530 1.70675 1.04172 1.22707 0.79734 0.99117 1.01903 1.21947 1.00198 0.98396 0.95165 1.21411 0.93239 1.01860 0.98423 1.20950 0.89291 0.93979 0.91221 0.98624 1.22008 0.89916 0.98201 0.87357 0.90287 1.22719 0.94580 1.00868 0.97188 1.21546 0.89441 0.93894 0.90121 1.44367 1.09574 1.63016 1.16583 1.19413 1.01453 1.23628 0.91576 0.89363 1.25726 0.97144 1.00998 1.02470 1.70170 1.09499 1.40604 1.39973 0.85039 0.78110 0.77277 0.78814 1.21939 1.22173 1.18531 0.85122 0.85946 0.88326 0.87871 0.89464 0.92302 0.93057 0.92279 0.90850 0.91737 0.89075 0.93004 0.92618 0.89742 0.85327 0.92055 0.86981 0.92595 0.91823 0.90891 0.92099 0.94215 0.99298 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 11.98 67.78 0.81 -0.52 16 2 C -0.17 -2.68 6.13 25.64 0.16 -2.52 16 3 C -0.03 -0.70 0.51 -53.68 -0.03 -0.73 16 4 C -0.16 -2.11 6.57 71.98 0.47 -1.63 16 5 C -0.09 -2.05 3.92 30.59 0.12 -1.93 16 6 C 0.07 1.15 5.35 71.98 0.39 1.53 16 7 O -0.43 -8.93 10.70 -148.98 -1.59 -10.52 16 8 C 0.03 0.32 11.01 113.37 1.25 1.57 16 9 C 0.52 16.23 6.47 87.66 0.57 16.80 16 10 O -0.58 -23.52 12.72 -3.03 -0.04 -23.56 16 11 N -0.59 -17.72 2.90 -790.33 -2.29 -20.01 16 12 C 0.09 1.69 4.41 86.16 0.38 2.07 16 13 C -0.12 -2.55 5.94 30.94 0.18 -2.37 16 14 C -0.11 -3.65 5.46 30.27 0.17 -3.48 16 15 C 0.15 6.59 2.57 45.50 0.12 6.70 16 16 H 0.00 -0.17 8.06 -2.39 -0.02 -0.19 16 17 C 0.13 5.11 3.32 46.14 0.15 5.27 16 18 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 19 C -0.12 -5.32 5.10 31.59 0.16 -5.16 16 20 C 0.18 9.69 5.59 86.87 0.49 10.18 16 21 N -0.61 -33.03 3.35 -670.51 -2.25 -35.28 16 22 C -0.23 -13.23 9.91 84.04 0.83 -12.40 16 23 H 0.09 4.73 7.37 -2.91 -0.02 4.70 16 24 C -0.07 -4.14 5.47 84.86 0.46 -3.68 16 25 N -0.95 -59.86 10.53 21.65 0.23 -59.64 16 26 Si 0.98 46.79 29.56 68.60 2.03 48.82 16 27 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 28 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 29 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 30 H 0.13 0.53 5.70 -2.91 -0.02 0.51 16 31 H 0.12 0.71 8.06 -2.91 -0.02 0.69 16 32 H 0.10 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.10 0.72 5.21 -2.39 -0.01 0.71 16 34 H 0.09 0.97 4.89 -2.39 -0.01 0.96 16 35 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.05 1.46 8.10 -2.38 -0.02 1.44 16 37 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 38 H 0.07 0.88 6.38 -2.39 -0.02 0.87 16 39 H 0.06 0.91 7.27 -2.39 -0.02 0.89 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.08 1.39 8.01 -2.39 -0.02 1.37 16 44 H 0.13 1.77 2.31 -2.39 -0.01 1.77 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.06 1.94 7.72 -2.39 -0.02 1.92 16 48 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 49 H 0.07 3.58 6.04 -2.38 -0.01 3.57 16 50 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 51 H 0.04 2.41 6.77 -2.39 -0.02 2.39 16 52 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 53 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -79.36 388.51 3.65 -75.71 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.88 Total: 14.78 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.68 Total: 9.69 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -4.31 Total: -114.92 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.63 Total: -34.08 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -79.36 3.65 -75.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272034623.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.044 kcal (2) G-P(sol) polarization free energy of solvation -79.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds