Wall clock time and date at job start Tue Mar 31 2020 20:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 120.00371 * 2 1 4 4 C 1.50703 * 119.99444 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.47152 * 95.00643 * 4 2 1 6 6 C 1.46894 * 124.34778 * 270.02319 * 5 4 2 7 7 C 1.53976 * 105.37153 * 196.63159 * 6 5 4 8 8 C 1.54167 * 102.27729 * 335.05505 * 7 6 5 9 9 C 1.34470 * 124.35330 * 90.01973 * 5 4 2 10 10 O 1.21275 * 124.94799 * 359.60041 * 9 5 4 11 11 C 1.53437 * 109.66341 * 91.24359 * 7 6 5 12 12 O 1.44106 * 112.38563 * 82.74198 * 11 7 6 13 13 C 1.40628 * 116.46502 * 318.28316 * 12 11 7 14 14 C 1.54114 * 109.11017 * 93.87653 * 13 12 11 15 15 N 1.40426 * 111.98006 * 282.15435 * 14 13 12 16 16 C 1.46902 * 111.00073 * 188.31827 * 15 14 13 17 17 C 1.52994 * 109.46988 * 66.04214 * 16 15 14 18 18 C 1.52996 * 109.47119 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.47159 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 C 1.48030 * 114.23317 * 61.89657 * 15 14 13 28 28 H 1.07990 * 120.00142 * 180.02562 * 1 2 3 29 29 H 1.07994 * 119.99380 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46685 * 269.99776 * 3 2 1 31 31 H 1.08999 * 109.47016 * 29.99541 * 3 2 1 32 32 H 1.08995 * 109.47368 * 150.00036 * 3 2 1 33 33 H 1.08991 * 109.47507 * 335.00024 * 4 2 1 34 34 H 1.09002 * 109.46969 * 215.00054 * 4 2 1 35 35 H 1.08997 * 110.26736 * 77.65357 * 6 5 4 36 36 H 1.09002 * 110.26433 * 315.60490 * 6 5 4 37 37 H 1.09000 * 110.50168 * 142.97741 * 8 7 6 38 38 H 1.08997 * 110.51021 * 265.67407 * 8 7 6 39 39 H 1.08996 * 108.90175 * 321.99413 * 11 7 6 40 40 H 1.09001 * 108.90139 * 203.48677 * 11 7 6 41 41 H 1.08997 * 109.52646 * 333.98939 * 13 12 11 42 42 H 1.08991 * 109.52979 * 213.76688 * 13 12 11 43 43 H 1.09003 * 108.97538 * 161.51033 * 14 13 12 44 44 H 1.09001 * 108.98010 * 42.79978 * 14 13 12 45 45 H 1.08998 * 109.46869 * 306.05041 * 16 15 14 46 46 H 1.08994 * 109.47040 * 186.04744 * 16 15 14 47 47 H 1.09004 * 109.46806 * 60.00264 * 17 16 15 48 48 H 1.09000 * 109.47828 * 300.00569 * 17 16 15 49 49 H 1.09004 * 109.47066 * 60.00422 * 18 17 16 50 50 H 1.08994 * 109.47405 * 300.00252 * 18 17 16 51 51 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 52 52 H 1.08993 * 109.61690 * 40.72693 * 27 15 14 53 53 H 1.09001 * 109.61399 * 161.25831 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4120 -1.6685 -1.3752 6 6 1.5625 -2.4776 -2.2592 7 6 2.4880 -2.9474 -3.3966 8 6 3.5827 -1.8619 -3.3980 9 6 3.5505 -1.3041 -1.9910 10 8 4.4243 -0.6273 -1.4919 11 6 3.1088 -4.3021 -3.0309 12 8 2.2303 -5.4058 -3.3253 13 6 0.8723 -5.2282 -3.0061 14 6 0.1251 -4.7103 -4.2506 15 7 0.3446 -3.3396 -4.4627 16 6 -0.5260 -2.8258 -5.5287 17 6 -1.9849 -2.8947 -5.0731 18 6 -2.8916 -2.3602 -6.1835 19 6 -4.3287 -2.4275 -5.7346 20 1 -4.5710 -2.8125 -4.7550 21 6 -5.3337 -1.9916 -6.5720 22 7 -5.0385 -1.5224 -7.7646 23 14 -7.1142 -2.0678 -6.0125 24 1 -7.1782 -2.6315 -4.6401 25 1 -7.6922 -0.6998 -6.0128 26 1 -7.8879 -2.9322 -6.9396 27 6 1.7589 -2.9826 -4.7147 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 2.2453 1.6196 -1.0277 31 1 1.4746 2.0647 0.5138 32 1 3.0160 1.1747 0.5138 33 1 1.4385 -2.0853 0.4352 34 1 2.9742 -1.1987 0.5900 35 1 0.7496 -1.8721 -2.6597 36 1 1.1639 -3.3358 -1.7181 37 1 4.5567 -2.3022 -3.6119 38 1 3.3473 -1.0830 -4.1232 39 1 3.3394 -4.3088 -1.9656 40 1 4.0350 -4.4289 -3.5915 41 1 0.7798 -4.5032 -2.1976 42 1 0.4438 -6.1805 -2.6939 43 1 -0.9433 -4.8821 -4.1196 44 1 0.4670 -5.2636 -5.1252 45 1 -0.3968 -3.4305 -6.4263 46 1 -0.2617 -1.7911 -5.7464 47 1 -2.1141 -2.2900 -4.1754 48 1 -2.2492 -3.9295 -4.8553 49 1 -2.7623 -2.9652 -7.0810 50 1 -2.6276 -1.3255 -6.4017 51 1 -5.7456 -1.2161 -8.3538 52 1 2.2145 -3.7292 -5.3651 53 1 1.8101 -2.0017 -5.1874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274043702.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:22 Heat of formation + Delta-G solvation = -62.347986 kcal Electronic energy + Delta-G solvation = -30950.841274 eV Core-core repulsion = 27015.631456 eV Total energy + Delta-G solvation = -3935.209819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.34137 -40.25860 -37.97297 -37.57518 -36.86346 -35.58353 -33.97307 -33.19091 -30.54060 -29.45309 -28.35209 -28.26532 -27.74644 -27.09705 -25.40992 -24.21232 -22.73158 -21.54381 -20.92444 -20.40738 -19.41933 -18.48457 -18.11626 -17.69922 -17.05634 -16.86761 -16.57782 -16.51779 -16.29543 -15.91864 -15.61519 -15.36022 -15.30039 -14.98398 -14.69017 -14.43789 -14.31456 -14.14496 -14.08538 -13.76254 -13.59862 -13.35365 -13.13129 -13.00972 -12.70478 -12.67101 -12.65370 -12.52391 -12.45114 -12.22277 -12.07663 -12.01067 -11.86009 -11.37201 -11.33645 -11.27096 -11.05676 -10.82218 -10.54211 -10.47922 -10.09626 -9.65890 -9.16428 -8.18210 -6.28333 1.09180 1.40969 1.41766 1.54464 1.56506 2.23937 2.42132 2.76999 2.84513 3.15667 3.34044 3.41385 3.49540 3.85852 3.87751 3.93126 3.99968 4.05324 4.15069 4.21648 4.40574 4.44368 4.48908 4.53498 4.59421 4.64052 4.66167 4.70083 4.72560 4.75439 4.77090 4.80754 4.85214 4.93249 4.98412 5.00144 5.04396 5.05122 5.11301 5.12226 5.18247 5.33341 5.52392 5.56152 5.63338 5.79811 5.85140 5.90019 6.06209 6.14693 6.28738 6.32287 6.48840 6.89671 7.14470 7.41033 8.93767 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010980 B = 0.003087 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.371798 B = 9068.474156 C =10546.928350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.162 4.162 3 C -0.109 4.109 4 C 0.158 3.842 5 N -0.610 5.610 6 C 0.117 3.883 7 C -0.089 4.089 8 C -0.135 4.135 9 C 0.511 3.489 10 O -0.574 6.574 11 C 0.075 3.925 12 O -0.395 6.395 13 C 0.053 3.947 14 C 0.036 3.964 15 N -0.547 5.547 16 C 0.075 3.925 17 C -0.088 4.088 18 C 0.025 3.975 19 C -0.537 4.537 20 H 0.060 0.940 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.961 3.039 24 H -0.260 1.260 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.079 3.921 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.018 0.982 45 H 0.023 0.977 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.051 0.949 49 H -0.012 1.012 50 H -0.009 1.009 51 H 0.262 0.738 52 H 0.053 0.947 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.342 -3.900 14.563 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.166 4.166 4 C 0.037 3.963 5 N -0.342 5.342 6 C -0.004 4.004 7 C -0.090 4.090 8 C -0.176 4.176 9 C 0.300 3.700 10 O -0.454 6.454 11 C -0.001 4.001 12 O -0.314 6.314 13 C -0.024 4.024 14 C -0.094 4.094 15 N -0.271 5.271 16 C -0.052 4.052 17 C -0.126 4.126 18 C -0.013 4.013 19 C -0.575 4.575 20 H 0.079 0.921 21 C -0.199 4.199 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.184 1.184 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.048 4.048 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.077 0.923 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.036 0.964 45 H 0.041 0.959 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.006 0.994 50 H 0.009 0.991 51 H 0.071 0.929 52 H 0.071 0.929 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.653 -3.456 15.094 23.482 hybrid contribution -1.107 0.186 -0.975 1.487 sum 16.547 -3.270 14.119 21.996 Atomic orbital electron populations 1.23922 0.94914 1.02856 0.98650 1.22125 0.95827 0.96245 1.02143 1.20735 0.99944 0.94783 1.01162 1.20480 0.99975 0.94303 0.81551 1.48605 1.19584 1.52175 1.13884 1.22622 0.92871 0.95288 0.89604 1.21571 0.95376 0.95942 0.96117 1.22456 1.01472 0.99090 0.94548 1.21312 0.80983 0.78836 0.88883 1.90687 1.41736 1.40952 1.72054 1.23064 0.92689 0.83629 1.00714 1.87553 1.18760 1.39432 1.85647 1.22945 0.80989 1.02422 0.96031 1.21702 1.01556 0.87745 0.98392 1.59301 1.06154 1.16452 1.45170 1.21979 0.92598 0.99405 0.91225 1.21407 0.92616 1.00158 0.98419 1.18974 0.93923 0.94478 0.93898 1.21731 0.93108 1.41187 1.01500 0.92132 1.25957 1.03988 0.94935 0.95000 1.70104 1.34166 1.43875 1.09360 0.85452 0.79311 0.77818 0.78802 1.18407 1.20573 1.20574 1.21822 0.86636 1.01946 0.94438 0.87386 0.88022 0.93349 0.90955 0.92372 0.87781 0.90216 0.89942 0.88551 0.86025 0.86433 0.92291 0.87609 0.89912 0.87882 0.90023 0.96398 0.95918 0.91106 0.92572 0.92996 0.99409 0.99078 0.92907 0.92912 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 13.89 67.77 0.94 -2.00 16 2 C -0.16 -3.06 5.64 -16.49 -0.09 -3.16 16 3 C -0.11 -2.17 10.03 71.24 0.71 -1.46 16 4 C 0.16 2.75 6.09 85.63 0.52 3.27 16 5 N -0.61 -11.53 2.92 -822.78 -2.40 -13.93 16 6 C 0.12 2.02 5.01 86.63 0.43 2.46 16 7 C -0.09 -1.39 0.59 -52.07 -0.03 -1.42 16 8 C -0.14 -2.11 5.91 30.46 0.18 -1.93 16 9 C 0.51 11.25 8.02 87.93 0.71 11.96 16 10 O -0.57 -16.97 17.60 -3.01 -0.05 -17.02 16 11 C 0.08 1.13 5.64 72.13 0.41 1.53 16 12 O -0.40 -7.57 10.18 -145.57 -1.48 -9.05 16 13 C 0.05 0.94 6.38 72.36 0.46 1.40 16 14 C 0.04 0.81 4.98 87.85 0.44 1.24 16 15 N -0.55 -12.70 2.70 -911.62 -2.46 -15.16 16 16 C 0.07 2.27 4.97 86.30 0.43 2.70 16 17 C -0.09 -3.33 5.06 30.59 0.15 -3.18 16 18 C 0.02 1.26 4.97 29.85 0.15 1.41 16 19 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 20 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 21 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 22 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 23 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 C 0.08 1.48 4.66 85.33 0.40 1.87 16 28 H 0.11 1.74 7.99 -2.92 -0.02 1.71 16 29 H 0.10 1.76 8.04 -2.91 -0.02 1.74 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.22 8.06 -2.39 -0.02 1.20 16 32 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 33 H 0.10 1.35 7.99 -2.39 -0.02 1.33 16 34 H 0.08 1.49 7.89 -2.39 -0.02 1.47 16 35 H 0.08 1.74 7.27 -2.39 -0.02 1.72 16 36 H 0.10 1.49 4.69 -2.39 -0.01 1.48 16 37 H 0.12 1.48 7.62 -2.39 -0.02 1.47 16 38 H 0.12 1.71 7.43 -2.39 -0.02 1.69 16 39 H 0.06 0.85 7.95 -2.39 -0.02 0.84 16 40 H 0.11 1.31 7.75 -2.39 -0.02 1.29 16 41 H 0.08 1.31 4.00 -2.39 -0.01 1.30 16 42 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.08 2.02 5.93 -2.39 -0.01 2.00 16 44 H 0.02 0.45 8.10 -2.39 -0.02 0.43 16 45 H 0.02 0.73 8.11 -2.39 -0.02 0.71 16 46 H 0.07 2.15 7.70 -2.39 -0.02 2.13 16 47 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 48 H 0.05 1.92 6.36 -2.39 -0.02 1.90 16 49 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 50 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 51 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 52 H 0.05 1.02 7.72 -2.39 -0.02 1.00 16 53 H 0.09 1.58 6.85 -2.39 -0.02 1.56 16 Total: -1.00 -68.31 406.22 3.29 -65.02 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.87 Total: 15.03 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 6.50 Total: -14.48 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -4.58 Total: -85.08 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -1.54 Total: -26.07 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.31 3.29 -65.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043702.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.669 kcal (2) G-P(sol) polarization free energy of solvation -68.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds