Wall clock time and date at job start Tue Mar 31 2020 20:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50694 * 120.00357 * 2 1 4 4 C 1.50706 * 119.99678 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.46571 * 95.00323 * 4 2 1 6 6 C 1.46882 * 124.34899 * 89.99971 * 5 4 2 7 7 C 1.53983 * 105.39201 * 163.50322 * 6 5 4 8 8 C 1.54158 * 102.28090 * 24.86227 * 7 6 5 9 9 C 1.34473 * 124.34914 * 269.97314 * 5 4 2 10 10 O 1.21286 * 124.94799 * 0.25285 * 9 5 4 11 11 C 1.53435 * 109.69336 * 268.68083 * 7 6 5 12 12 O 1.44074 * 112.37684 * 193.92666 * 11 7 6 13 13 C 1.40640 * 116.42177 * 318.29670 * 12 11 7 14 14 C 1.54091 * 109.12063 * 93.90368 * 13 12 11 15 15 N 1.40428 * 111.99176 * 282.10932 * 14 13 12 16 16 C 1.46901 * 111.00189 * 188.28757 * 15 14 13 17 17 C 1.52996 * 109.47195 * 66.04559 * 16 15 14 18 18 C 1.52997 * 109.46947 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47238 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99515 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00176 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00200 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00139 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47145 * 89.99836 * 23 21 19 25 25 H 1.48496 * 109.47547 * 210.00333 * 23 21 19 26 26 H 1.48499 * 109.47030 * 330.00237 * 23 21 19 27 27 C 1.48045 * 114.21029 * 61.87528 * 15 14 13 28 28 H 1.08004 * 119.99663 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.00508 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47301 * 239.99943 * 3 2 1 31 31 H 1.09008 * 109.47133 * 359.97438 * 3 2 1 32 32 H 1.08993 * 109.47772 * 119.99444 * 3 2 1 33 33 H 1.09004 * 109.47135 * 335.00699 * 4 2 1 34 34 H 1.08996 * 109.47335 * 214.99938 * 4 2 1 35 35 H 1.09006 * 110.25674 * 44.52775 * 6 5 4 36 36 H 1.08997 * 110.26065 * 282.48853 * 6 5 4 37 37 H 1.08996 * 110.50324 * 94.31687 * 8 7 6 38 38 H 1.09006 * 110.50479 * 217.01313 * 8 7 6 39 39 H 1.09000 * 108.89934 * 73.18551 * 11 7 6 40 40 H 1.08997 * 108.82199 * 314.62288 * 11 7 6 41 41 H 1.09004 * 109.53052 * 334.00513 * 13 12 11 42 42 H 1.09011 * 109.52704 * 213.79589 * 13 12 11 43 43 H 1.09003 * 108.97754 * 161.46167 * 14 13 12 44 44 H 1.08997 * 108.91243 * 42.71078 * 14 13 12 45 45 H 1.08992 * 109.46788 * 306.04190 * 16 15 14 46 46 H 1.08996 * 109.46661 * 186.04493 * 16 15 14 47 47 H 1.09001 * 109.47372 * 60.00105 * 17 16 15 48 48 H 1.09004 * 109.47108 * 299.99849 * 17 16 15 49 49 H 1.09001 * 109.46832 * 59.99979 * 18 17 16 50 50 H 1.09000 * 109.47611 * 300.00276 * 18 17 16 51 51 H 0.96999 * 120.00061 * 179.97438 * 22 21 19 52 52 H 1.08996 * 109.61741 * 40.77139 * 27 15 14 53 53 H 1.09008 * 109.61227 * 161.31009 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4118 -1.6684 -1.3753 6 6 3.6552 -1.2698 -2.0481 7 6 3.7758 -2.2006 -3.2688 8 6 2.3078 -2.5937 -3.5277 9 6 1.6347 -2.4099 -2.1842 10 8 0.5521 -2.8655 -1.8815 11 6 4.5818 -3.4498 -2.8889 12 8 5.0051 -4.2013 -4.0429 13 6 4.0607 -4.3490 -5.0745 14 6 4.2715 -3.2326 -6.1154 15 7 3.7388 -2.0061 -5.6864 16 6 3.7743 -1.0103 -6.7657 17 6 2.8314 -1.4432 -7.8902 18 6 2.8678 -0.4056 -9.0140 19 6 1.9395 -0.8323 -10.1219 20 1 1.3793 -1.7513 -10.0330 21 6 1.8055 -0.0494 -11.2489 22 7 0.9950 -0.4215 -12.2155 23 14 2.7740 1.5405 -11.4022 24 1 4.0800 1.2638 -12.0526 25 1 2.0069 2.5101 -12.2249 26 1 3.0050 2.1117 -10.0511 27 6 4.3592 -1.4733 -4.4522 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5401 -0.9352 0.0004 30 1 2.6903 1.3627 -0.8900 31 1 1.3552 2.1336 -0.0005 32 1 2.6901 1.3629 0.8899 33 1 1.4384 -2.0854 0.4351 34 1 2.9741 -1.1988 0.5899 35 1 4.5064 -1.4092 -1.3816 36 1 3.5934 -0.2305 -2.3705 37 1 1.8616 -1.9341 -4.2719 38 1 2.2419 -3.6333 -3.8489 39 1 3.9649 -4.0895 -2.2578 40 1 5.4625 -3.1420 -2.3253 41 1 3.0548 -4.2764 -4.6608 42 1 4.1906 -5.3208 -5.5510 43 1 3.7880 -3.5220 -7.0485 44 1 5.3402 -3.1122 -6.2929 45 1 4.7898 -0.9308 -7.1535 46 1 3.4567 -0.0425 -6.3776 47 1 1.8158 -1.5226 -7.5024 48 1 3.1489 -2.4110 -8.2782 49 1 3.8833 -0.3258 -9.4019 50 1 2.5501 0.5620 -8.6257 51 1 0.9005 0.1295 -13.0081 52 1 5.4367 -1.6338 -4.4856 53 1 4.1477 -0.4073 -4.3672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274043703.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:26 Heat of formation + Delta-G solvation = -60.777870 kcal Electronic energy + Delta-G solvation = -30720.872260 eV Core-core repulsion = 26785.730527 eV Total energy + Delta-G solvation = -3935.141733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.34298 -40.25284 -37.98427 -37.70622 -36.82754 -35.57208 -33.88410 -33.27991 -30.95957 -29.54825 -28.58492 -28.12403 -27.59107 -27.16027 -25.32555 -24.08374 -22.61452 -21.60464 -20.67842 -20.55678 -19.47706 -18.88006 -18.12418 -17.71898 -17.11342 -16.87571 -16.63104 -16.39965 -16.23037 -15.91044 -15.64931 -15.49072 -15.19155 -14.92110 -14.81767 -14.63581 -14.57506 -13.97359 -13.86169 -13.85121 -13.67638 -13.44041 -13.27796 -13.02925 -12.75243 -12.71494 -12.67891 -12.43804 -12.29179 -12.18320 -12.02112 -11.94869 -11.77924 -11.41474 -11.36416 -11.20747 -11.13882 -10.80536 -10.74718 -10.51388 -10.11753 -9.70158 -9.12444 -8.27962 -6.32307 1.06988 1.36700 1.39190 1.51102 1.54817 2.21555 2.37638 2.78562 2.85761 3.07615 3.38263 3.44371 3.52876 3.84532 3.85913 3.97253 4.00154 4.08270 4.17695 4.23310 4.36805 4.40615 4.47426 4.55303 4.58388 4.62313 4.66821 4.70945 4.71659 4.74103 4.79181 4.86761 4.89332 4.93721 4.94861 4.97114 5.00388 5.02266 5.06267 5.15812 5.18270 5.20109 5.55895 5.56392 5.64454 5.65121 5.69123 5.83663 6.10111 6.13692 6.28554 6.33076 6.49392 6.76851 7.13645 7.32405 8.89284 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011654 B = 0.002879 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.933978 B = 9723.989618 C =10954.888574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.153 4.153 3 C -0.112 4.112 4 C 0.157 3.843 5 N -0.608 5.608 6 C 0.119 3.881 7 C -0.090 4.090 8 C -0.135 4.135 9 C 0.507 3.493 10 O -0.582 6.582 11 C 0.075 3.925 12 O -0.394 6.394 13 C 0.050 3.950 14 C 0.041 3.959 15 N -0.557 5.557 16 C 0.074 3.926 17 C -0.091 4.091 18 C -0.009 4.009 19 C -0.532 4.532 20 H 0.027 0.973 21 C -0.001 4.001 22 N -0.956 5.956 23 Si 0.955 3.045 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.241 1.241 27 C 0.080 3.920 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.026 0.974 45 H 0.036 0.964 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.045 0.955 49 H 0.018 0.982 50 H 0.022 0.978 51 H 0.265 0.735 52 H 0.059 0.941 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.431 1.023 29.588 32.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.154 4.154 3 C -0.169 4.169 4 C 0.036 3.964 5 N -0.340 5.340 6 C -0.003 4.003 7 C -0.092 4.092 8 C -0.175 4.175 9 C 0.296 3.704 10 O -0.462 6.462 11 C -0.001 4.001 12 O -0.313 6.313 13 C -0.026 4.026 14 C -0.089 4.089 15 N -0.281 5.281 16 C -0.053 4.053 17 C -0.129 4.129 18 C -0.047 4.047 19 C -0.570 4.570 20 H 0.045 0.955 21 C -0.197 4.197 22 N -0.597 5.597 23 Si 0.778 3.222 24 H -0.192 1.192 25 H -0.212 1.212 26 H -0.165 1.165 27 C -0.047 4.047 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.110 0.890 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.067 0.933 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.101 0.899 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.036 0.964 50 H 0.040 0.960 51 H 0.074 0.926 52 H 0.077 0.923 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.561 0.673 29.780 31.952 hybrid contribution -0.150 0.436 -1.192 1.278 sum 11.411 1.109 28.588 30.801 Atomic orbital electron populations 1.23907 0.96171 1.01669 1.00662 1.22309 0.95506 0.97120 1.00436 1.20863 1.00236 0.92685 1.03111 1.20490 1.01028 0.93402 0.81442 1.48441 1.20739 1.51344 1.13503 1.22359 0.86559 0.98532 0.92837 1.21637 0.94470 0.96899 0.96178 1.22710 0.95552 1.04939 0.94268 1.21571 0.84015 0.76896 0.87898 1.90680 1.22668 1.53257 1.79632 1.23092 0.99873 0.90329 0.86844 1.87530 1.41454 1.73480 1.28808 1.22902 0.93945 0.97870 0.87918 1.21604 0.97555 0.90679 0.99080 1.59211 1.59484 1.03827 1.05548 1.22027 0.97815 0.94874 0.90601 1.21335 0.98888 0.98285 0.94353 1.19483 0.95437 0.96059 0.93715 1.21543 1.25189 1.07567 1.02737 0.95496 1.26105 0.96285 1.02227 0.95109 1.70090 1.39819 1.40789 1.08963 0.85588 0.78549 0.78525 0.79540 1.19151 1.21237 1.16472 1.21805 0.97132 0.98983 0.86752 0.87635 0.90222 0.91004 0.92225 0.89675 0.91298 0.86241 0.86473 0.89009 0.87202 0.88112 0.93300 0.86380 0.90710 0.88503 0.90826 0.95639 0.94612 0.89931 0.93505 0.93606 0.96367 0.95994 0.92585 0.92273 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.46 13.90 67.78 0.94 -2.52 16 2 C -0.15 -2.25 5.63 -16.48 -0.09 -2.34 16 3 C -0.11 -1.08 10.12 71.23 0.72 -0.36 16 4 C 0.16 2.13 6.10 85.63 0.52 2.65 16 5 N -0.61 -9.62 2.92 -822.75 -2.40 -12.02 16 6 C 0.12 1.10 6.41 86.64 0.56 1.66 16 7 C -0.09 -1.26 0.60 -52.07 -0.03 -1.29 16 8 C -0.14 -2.83 4.47 30.46 0.14 -2.70 16 9 C 0.51 12.29 7.98 87.93 0.70 12.99 16 10 O -0.58 -19.63 17.60 -3.05 -0.05 -19.68 16 11 C 0.07 1.03 5.65 72.13 0.41 1.44 16 12 O -0.39 -7.72 10.19 -145.64 -1.48 -9.20 16 13 C 0.05 1.03 6.38 72.35 0.46 1.49 16 14 C 0.04 0.95 4.98 87.84 0.44 1.39 16 15 N -0.56 -12.64 2.68 -911.64 -2.44 -15.08 16 16 C 0.07 2.01 4.97 86.30 0.43 2.44 16 17 C -0.09 -3.39 5.06 30.59 0.15 -3.24 16 18 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 19 C -0.53 -31.03 9.66 25.60 0.25 -30.78 16 20 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 21 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 22 N -0.96 -60.96 13.96 21.44 0.30 -60.66 16 23 Si 0.96 44.06 27.47 68.60 1.88 45.94 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 27 C 0.08 1.26 4.67 85.32 0.40 1.65 16 28 H 0.11 1.73 7.83 -2.91 -0.02 1.70 16 29 H 0.08 1.82 7.99 -2.91 -0.02 1.79 16 30 H 0.07 0.62 7.97 -2.38 -0.02 0.60 16 31 H 0.06 0.62 7.78 -2.38 -0.02 0.60 16 32 H 0.08 0.50 8.14 -2.39 -0.02 0.49 16 33 H 0.07 1.20 7.77 -2.39 -0.02 1.18 16 34 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.12 0.35 7.62 -2.38 -0.02 0.33 16 36 H 0.09 0.69 7.25 -2.39 -0.02 0.67 16 37 H 0.11 2.71 7.25 -2.39 -0.02 2.69 16 38 H 0.10 2.29 4.71 -2.38 -0.01 2.28 16 39 H 0.05 0.74 7.90 -2.39 -0.02 0.72 16 40 H 0.12 1.01 7.76 -2.39 -0.02 0.99 16 41 H 0.08 1.58 3.98 -2.38 -0.01 1.57 16 42 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.07 2.00 5.93 -2.39 -0.01 1.98 16 44 H 0.03 0.62 8.10 -2.39 -0.02 0.60 16 45 H 0.04 0.96 8.11 -2.39 -0.02 0.94 16 46 H 0.08 2.07 7.70 -2.39 -0.02 2.05 16 47 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.05 1.77 6.36 -2.38 -0.02 1.75 16 49 H 0.02 0.79 7.57 -2.39 -0.02 0.78 16 50 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 51 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 52 H 0.06 0.89 7.72 -2.39 -0.02 0.88 16 53 H 0.10 1.26 6.85 -2.38 -0.02 1.25 16 Total: -1.00 -76.28 401.88 3.20 -73.07 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.82 Total: 15.04 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 6.57 Total: -17.40 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -4.54 Total: -87.77 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -1.54 Total: -28.89 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Total: -76.28 3.20 -73.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043703.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.297 kcal (2) G-P(sol) polarization free energy of solvation -76.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds