Wall clock time and date at job start Tue Mar 31 2020 20:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47006 * 179.97438 * 4 3 2 6 6 C 1.47596 * 111.00175 * 266.12313 * 5 4 3 7 7 C 1.52877 * 87.77565 * 221.76159 * 6 5 4 8 8 C 1.47588 * 111.00051 * 169.99601 * 5 4 3 9 9 C 1.52640 * 114.20861 * 139.55959 * 7 6 5 10 10 C 1.53309 * 108.88509 * 185.47596 * 9 7 6 11 11 O 1.42895 * 109.30251 * 304.97067 * 10 9 7 12 12 C 1.42897 * 114.39717 * 63.10066 * 11 10 9 13 13 C 1.52639 * 114.20605 * 271.69384 * 7 6 5 14 14 H 1.08996 * 109.56563 * 54.70710 * 13 7 6 15 15 C 1.50698 * 109.57016 * 294.46337 * 13 7 6 16 16 O 1.21278 * 120.00139 * 0.02562 * 15 13 7 17 17 N 1.34780 * 119.99570 * 180.02562 * 15 13 7 18 18 C 1.47064 * 136.05885 * 359.62824 * 17 15 13 19 19 C 1.53232 * 88.08141 * 207.20287 * 18 17 15 20 20 C 1.50703 * 114.32943 * 220.46994 * 19 18 17 21 21 H 1.07998 * 120.00021 * 93.75908 * 20 19 18 22 22 C 1.37877 * 120.00270 * 273.76565 * 20 19 18 23 23 N 1.31513 * 119.99634 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00397 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47330 * 89.99350 * 24 22 20 26 26 H 1.48497 * 109.47120 * 210.00111 * 24 22 20 27 27 H 1.48506 * 109.47003 * 329.99787 * 24 22 20 28 28 C 1.47068 * 136.05477 * 179.97438 * 17 15 13 29 29 H 1.09001 * 109.46997 * 60.00426 * 1 2 3 30 30 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47380 * 300.00763 * 1 2 3 32 32 H 1.08996 * 109.47452 * 240.00000 * 2 1 3 33 33 H 1.09001 * 109.46997 * 119.99574 * 2 1 3 34 34 H 1.09001 * 109.47502 * 60.00153 * 3 2 1 35 35 H 1.09001 * 109.47289 * 299.99950 * 3 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 4 3 2 37 37 H 1.08993 * 109.46955 * 60.00011 * 4 3 2 38 38 H 1.08996 * 113.49863 * 336.48334 * 6 5 4 39 39 H 1.08999 * 113.50517 * 107.03603 * 6 5 4 40 40 H 1.09002 * 113.50403 * 252.96632 * 8 5 4 41 41 H 1.09007 * 113.50026 * 23.51051 * 8 5 4 42 42 H 1.08999 * 109.56917 * 305.29853 * 9 7 6 43 43 H 1.09006 * 109.56699 * 65.65761 * 9 7 6 44 44 H 1.08999 * 109.49893 * 185.01595 * 10 9 7 45 45 H 1.09003 * 109.52206 * 64.93174 * 10 9 7 46 46 H 1.09003 * 109.49813 * 176.95070 * 12 11 10 47 47 H 1.08994 * 109.52696 * 56.86223 * 12 11 10 48 48 H 1.08996 * 113.46944 * 321.93917 * 18 17 15 49 49 H 1.09007 * 113.46517 * 92.38143 * 18 17 15 50 50 H 1.09007 * 114.19767 * 87.73285 * 19 18 17 51 51 H 0.97002 * 120.00096 * 180.02562 * 23 22 20 52 52 H 1.08996 * 113.46735 * 267.63000 * 28 17 15 53 53 H 1.09005 * 113.46418 * 38.06370 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8274 0.0000 6 6 4.3244 3.2943 -1.3749 7 6 5.5992 3.9496 -0.8432 8 6 5.5152 2.8740 0.2400 9 6 6.8059 3.8126 -1.7679 10 6 8.0397 4.3866 -1.0619 11 8 7.7702 5.7305 -0.6577 12 6 6.7155 5.8592 0.2978 13 6 5.4030 5.3728 -0.3275 14 1 4.6144 5.3830 0.4248 15 6 5.0209 6.2761 -1.4717 16 8 4.9152 5.8240 -2.5920 17 7 4.7965 7.5864 -1.2497 18 6 4.8146 8.4811 -0.0826 19 6 3.7926 9.3631 -0.8075 20 6 4.0320 10.8433 -0.6565 21 1 4.6034 11.3767 -1.4016 22 6 3.5215 11.5166 0.4331 23 7 2.8253 10.8671 1.3403 24 14 3.8188 13.3512 0.6207 25 1 2.7223 14.1008 -0.0432 26 1 3.8556 13.7017 2.0632 27 1 5.1152 13.7095 -0.0089 28 6 4.4200 8.7496 -2.0671 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9330 0.9288 0.8909 37 1 3.9337 0.9285 -0.8891 38 1 4.5134 2.4848 -2.0799 39 1 3.5878 4.0098 -1.7405 40 1 5.7806 3.2358 1.2333 41 1 6.0290 1.9497 -0.0244 42 1 6.9728 2.7601 -1.9967 43 1 6.6235 4.3641 -2.6903 44 1 8.8883 4.3755 -1.7458 45 1 8.2714 3.7824 -0.1847 46 1 6.6142 6.9047 0.5891 47 1 6.9449 5.2571 1.1769 48 1 4.4225 8.0201 0.8238 49 1 5.7761 8.9702 0.0745 50 1 2.7548 9.0752 -0.6391 51 1 2.4658 11.3408 2.1066 52 1 5.2752 9.3107 -2.4436 53 1 3.6928 8.5163 -2.8450 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278223931.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:15 Heat of formation + Delta-G solvation = -39.484811 kcal Electronic energy + Delta-G solvation = -30769.511767 eV Core-core repulsion = 26835.293370 eV Total energy + Delta-G solvation = -3934.218397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.58368 -40.78411 -39.20605 -38.41216 -36.35128 -34.65140 -33.60247 -32.82519 -30.77024 -30.17304 -27.34959 -27.22074 -26.74515 -26.26547 -25.18565 -24.01783 -22.54905 -22.02474 -21.77588 -20.26315 -19.08540 -18.67363 -17.90753 -17.43011 -16.94643 -16.86197 -16.68778 -16.63723 -16.38819 -15.93524 -15.81147 -15.62979 -15.32374 -14.76012 -14.53953 -14.28701 -14.13473 -13.94785 -13.68555 -13.48502 -13.26674 -13.21683 -13.14734 -13.03609 -12.86496 -12.76261 -12.60804 -12.57302 -12.16845 -12.07590 -11.93131 -11.74004 -11.66213 -11.58250 -11.47788 -11.40393 -11.20328 -11.04077 -10.66097 -10.53004 -10.25666 -9.81308 -9.49483 -8.15448 -6.26592 1.47744 1.49757 1.59300 1.69648 2.03938 2.47242 2.92347 2.94967 3.14199 3.20900 3.45087 3.69682 3.80399 3.89782 3.91755 3.96530 4.07950 4.24048 4.25651 4.29355 4.35119 4.38915 4.40420 4.45317 4.49773 4.53575 4.58859 4.60824 4.65417 4.69662 4.70152 4.72826 4.76932 4.82364 4.84722 4.91435 4.94663 4.97814 5.04540 5.07378 5.08095 5.18175 5.19909 5.29016 5.34569 5.44211 5.46417 5.60078 5.82260 6.11856 6.23362 6.24578 6.81620 6.98308 7.24605 7.43391 8.94498 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.003015 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.288338 B = 9284.031369 C =10871.365361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.110 4.110 4 C 0.022 3.978 5 N -0.491 5.491 6 C 0.021 3.979 7 C -0.066 4.066 8 C 0.020 3.980 9 C -0.137 4.137 10 C 0.059 3.941 11 O -0.402 6.402 12 C 0.074 3.926 13 C -0.101 4.101 14 H 0.107 0.893 15 C 0.543 3.457 16 O -0.583 6.583 17 N -0.646 5.646 18 C 0.117 3.883 19 C 0.024 3.976 20 C -0.528 4.528 21 H 0.065 0.935 22 C 0.022 3.978 23 N -0.917 5.917 24 Si 0.958 3.042 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.265 1.265 28 C 0.106 3.894 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.055 0.945 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.036 0.964 51 H 0.265 0.735 52 H 0.079 0.921 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.360 -21.688 1.104 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.148 4.148 4 C -0.106 4.106 5 N -0.213 5.213 6 C -0.108 4.108 7 C -0.067 4.067 8 C -0.108 4.108 9 C -0.175 4.175 10 C -0.017 4.017 11 O -0.321 6.321 12 C -0.003 4.003 13 C -0.122 4.122 14 H 0.125 0.875 15 C 0.335 3.665 16 O -0.465 6.465 17 N -0.379 5.379 18 C -0.005 4.005 19 C 0.005 3.995 20 C -0.566 4.566 21 H 0.083 0.917 22 C -0.178 4.178 23 N -0.555 5.555 24 Si 0.783 3.217 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.189 1.189 28 C -0.017 4.017 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.074 0.926 44 H 0.121 0.879 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.078 0.922 49 H 0.097 0.903 50 H 0.055 0.945 51 H 0.074 0.926 52 H 0.097 0.903 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.864 -21.655 1.035 22.458 hybrid contribution -0.189 0.601 -0.497 0.803 sum 5.675 -21.053 0.538 21.811 Atomic orbital electron populations 1.21778 0.95749 1.02060 1.01555 1.21463 0.96052 0.95554 1.02490 1.21466 0.94672 0.97299 1.01389 1.22730 0.96295 0.89583 1.01973 1.68910 1.15011 1.20720 1.16654 1.23731 0.96483 0.98904 0.91688 1.21158 0.96110 0.92137 0.97249 1.23879 0.89486 0.97830 0.99599 1.22109 0.94130 1.02594 0.98669 1.22822 0.96890 0.82469 0.99557 1.87928 1.53377 1.28887 1.61874 1.22635 0.83887 1.02562 0.91220 1.21496 1.00885 0.93471 0.96395 0.87548 1.20433 0.75281 0.80626 0.90169 1.90559 1.54893 1.74939 1.26093 1.49958 1.67352 1.05879 1.14714 1.23222 1.00345 0.87970 0.88994 1.20160 0.94102 0.94316 0.90928 1.21193 1.34392 0.93086 1.07936 0.91707 1.25750 0.94130 1.02524 0.95444 1.70059 1.35694 1.37811 1.11976 0.85555 0.78827 0.80076 0.77205 1.20412 1.20899 1.18914 1.23165 0.98204 0.83767 0.96525 0.93440 0.91644 0.92968 0.91692 0.91018 0.92436 0.93909 0.89560 0.93051 0.90225 0.93066 0.88677 0.88471 0.88406 0.92591 0.87892 0.90442 0.89273 0.89009 0.92222 0.90283 0.94536 0.92627 0.90302 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 71.98 0.71 -1.56 16 2 C -0.12 -1.73 5.93 30.59 0.18 -1.55 16 3 C -0.11 -2.13 5.54 30.60 0.17 -1.96 16 4 C 0.02 0.40 4.82 86.31 0.42 0.82 16 5 N -0.49 -11.24 6.13 -927.64 -5.68 -16.92 16 6 C 0.02 0.55 6.27 83.71 0.52 1.08 16 7 C -0.07 -1.61 0.17 -52.50 -0.01 -1.62 16 8 C 0.02 0.37 6.75 83.72 0.57 0.94 16 9 C -0.14 -3.15 5.08 30.58 0.16 -2.99 16 10 C 0.06 1.22 6.82 72.09 0.49 1.71 16 11 O -0.40 -11.60 10.47 -148.98 -1.56 -13.16 16 12 C 0.07 1.99 6.15 72.09 0.44 2.43 16 13 C -0.10 -3.06 2.06 -11.56 -0.02 -3.09 16 14 H 0.11 3.33 7.95 -2.39 -0.02 3.32 16 15 C 0.54 21.55 6.67 87.66 0.58 22.13 16 16 O -0.58 -25.77 14.02 -3.02 -0.04 -25.82 16 17 N -0.65 -27.12 3.64 -858.83 -3.12 -30.24 16 18 C 0.12 5.00 6.32 83.09 0.53 5.53 16 19 C 0.02 1.18 3.77 -11.29 -0.04 1.13 16 20 C -0.53 -27.28 8.82 25.60 0.23 -27.05 16 21 H 0.06 3.26 7.81 -2.91 -0.02 3.23 16 22 C 0.02 1.14 5.46 84.65 0.46 1.60 16 23 N -0.92 -50.57 13.26 21.45 0.28 -50.28 16 24 Si 0.96 41.24 29.54 68.60 2.03 43.26 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 28 C 0.11 4.64 8.19 83.18 0.68 5.33 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 37 H 0.05 0.84 7.30 -2.39 -0.02 0.82 16 38 H 0.08 1.87 7.37 -2.39 -0.02 1.85 16 39 H 0.05 1.77 7.04 -2.39 -0.02 1.76 16 40 H 0.09 1.58 7.86 -2.39 -0.02 1.56 16 41 H 0.10 1.28 7.77 -2.38 -0.02 1.26 16 42 H 0.10 1.64 8.01 -2.39 -0.02 1.62 16 43 H 0.06 1.73 6.56 -2.38 -0.02 1.72 16 44 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.09 2.65 6.28 -2.39 -0.01 2.63 16 47 H 0.09 1.84 7.89 -2.39 -0.02 1.83 16 48 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 49 H 0.08 3.29 8.01 -2.38 -0.02 3.27 16 50 H 0.04 1.98 8.11 -2.38 -0.02 1.96 16 51 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 52 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 53 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -63.43 409.13 -1.17 -64.61 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.86 Total: 25.68 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.06 Total: 2.87 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -8.52 Total: -97.44 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -1.60 Total: -38.98 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -63.43 -1.17 -64.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278223931.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.120 kcal (2) G-P(sol) polarization free energy of solvation -63.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds