Wall clock time and date at job start Tue Mar 31 2020 20:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47193 * 2 1 4 4 C 1.53006 * 109.47264 * 180.02562 * 3 2 1 5 5 N 1.46890 * 109.47251 * 180.02562 * 4 3 2 6 6 C 1.46731 * 110.99893 * 294.90595 * 5 4 3 7 7 H 1.08996 * 109.41979 * 55.59381 * 6 5 4 8 8 C 1.53059 * 109.64179 * 175.41489 * 6 5 4 9 9 C 1.53159 * 109.14390 * 59.74029 * 8 6 5 10 10 C 1.53219 * 108.90719 * 359.64621 * 9 8 6 11 11 H 1.09005 * 110.21342 * 181.76996 * 10 9 8 12 12 C 1.53215 * 109.13664 * 61.29036 * 10 9 8 13 13 H 1.09005 * 109.56200 * 178.87136 * 12 10 9 14 14 O 1.42900 * 109.56910 * 58.64161 * 12 10 9 15 15 C 1.53047 * 109.64596 * 295.57973 * 6 5 4 16 16 C 1.46739 * 111.00138 * 170.00020 * 5 4 3 17 17 H 1.09002 * 109.41826 * 4.41430 * 16 5 4 18 18 C 1.50704 * 109.36561 * 244.57118 * 16 5 4 19 19 O 1.21270 * 120.00531 * 339.84069 * 18 16 5 20 20 N 1.34786 * 119.99490 * 159.84378 * 18 16 5 21 21 C 1.47062 * 136.06021 * 359.62168 * 20 18 16 22 22 C 1.53234 * 88.08589 * 207.20857 * 21 20 18 23 23 C 1.50692 * 114.32791 * 220.47183 * 22 21 20 24 24 H 1.08002 * 120.00349 * 93.76363 * 23 22 21 25 25 C 1.37877 * 120.00068 * 273.75760 * 23 22 21 26 26 N 1.31521 * 120.00231 * 180.02562 * 25 23 22 27 27 Si 1.86795 * 120.00066 * 0.02562 * 25 23 22 28 28 H 1.48507 * 109.47430 * 89.99882 * 27 25 23 29 29 H 1.48501 * 109.47617 * 210.00018 * 27 25 23 30 30 H 1.48505 * 109.47232 * 329.99849 * 27 25 23 31 31 C 1.47061 * 136.05430 * 180.02562 * 20 18 16 32 32 H 1.09003 * 109.46773 * 300.00054 * 1 2 3 33 33 H 1.08995 * 109.47327 * 59.99548 * 1 2 3 34 34 H 1.08994 * 109.46960 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.46876 * 240.00717 * 2 1 3 36 36 H 1.08995 * 109.47327 * 120.00452 * 2 1 3 37 37 H 1.08998 * 109.46976 * 60.00599 * 3 2 1 38 38 H 1.09000 * 109.47472 * 299.99973 * 3 2 1 39 39 H 1.09003 * 109.46986 * 59.99772 * 4 3 2 40 40 H 1.09000 * 109.46606 * 300.00200 * 4 3 2 41 41 H 1.09001 * 109.52091 * 179.63938 * 8 6 5 42 42 H 1.09002 * 109.52390 * 299.77269 * 8 6 5 43 43 H 1.09003 * 109.56631 * 239.81452 * 9 8 6 44 44 H 1.09000 * 109.56408 * 119.47234 * 9 8 6 45 45 H 0.96698 * 114.00014 * 179.97438 * 14 12 10 46 46 H 1.08997 * 109.52270 * 180.35161 * 15 6 5 47 47 H 1.08997 * 109.52412 * 60.14843 * 15 6 5 48 48 H 1.09007 * 113.46766 * 321.94684 * 21 20 18 49 49 H 1.09001 * 113.46412 * 92.37940 * 21 20 18 50 50 H 1.09002 * 114.19532 * 87.73217 * 22 21 20 51 51 H 0.96994 * 119.99982 * 180.02562 * 26 25 23 52 52 H 1.09001 * 113.46604 * 267.61536 * 31 20 18 53 53 H 1.08998 * 113.47321 * 37.99644 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.6906 3.5162 -1.2419 7 1 2.6108 3.4606 -1.3800 8 6 4.1144 4.9847 -1.1613 9 6 5.6307 5.0594 -0.9587 10 6 6.1943 3.6359 -0.8984 11 1 7.2698 3.6638 -0.7231 12 6 5.9065 2.9252 -2.2249 13 1 6.3224 1.9179 -2.1970 14 8 6.4993 3.6580 -3.2990 15 6 4.3903 2.8486 -2.4281 16 6 5.5071 2.8734 0.2373 17 1 5.8996 1.8574 0.2811 18 6 5.7771 3.5718 1.5451 19 8 4.9355 4.2979 2.0299 20 7 6.9542 3.3893 2.1760 21 6 8.1796 2.6150 1.9281 22 6 8.4016 2.5784 3.4438 23 6 9.8356 2.7692 3.8660 24 1 10.1977 3.7549 4.1182 25 6 10.6853 1.6853 3.9304 26 7 11.9367 1.8517 4.2993 27 14 10.0593 -0.0196 3.4936 28 1 10.2594 -0.2637 2.0425 29 1 10.8078 -1.0370 4.2745 30 1 8.6128 -0.1135 3.8165 31 6 7.5754 3.8715 3.4187 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 1.6768 1.9563 0.8900 38 1 1.6767 1.9564 -0.8900 39 1 3.9330 0.9288 -0.8909 40 1 3.9337 0.9285 0.8891 41 1 3.8451 5.4929 -2.0872 42 1 3.6097 5.4640 -0.3225 43 1 5.8492 5.5784 -0.0254 44 1 6.0842 5.5966 -1.7917 45 1 6.3564 3.2635 -4.1702 46 1 4.1197 3.3656 -3.3487 47 1 4.0835 1.8047 -2.4916 48 1 7.9921 1.6326 1.4944 49 1 8.9452 3.1744 1.3906 50 1 7.9116 1.7448 3.9471 51 1 12.5346 1.0893 4.3442 52 1 8.1784 4.7693 3.2826 53 1 6.8750 3.9564 4.2496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278225002.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:42 Heat of formation + Delta-G solvation = -71.494437 kcal Electronic energy + Delta-G solvation = -31548.166545 eV Core-core repulsion = 27612.560107 eV Total energy + Delta-G solvation = -3935.606439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.51132 -40.78220 -38.59346 -37.67269 -36.25416 -34.67375 -33.93269 -33.10658 -31.10945 -30.82327 -29.53283 -27.56244 -26.76654 -25.47269 -24.46954 -23.54162 -22.91770 -22.00466 -21.58051 -20.02162 -19.18743 -18.63029 -18.14637 -18.02690 -17.61810 -16.89916 -16.74113 -16.52950 -16.03500 -15.76387 -15.60294 -15.19311 -14.92144 -14.74942 -14.53205 -14.42015 -14.16209 -13.91699 -13.89549 -13.52405 -13.44281 -13.33927 -13.27239 -13.03699 -12.84675 -12.73708 -12.70332 -12.46036 -12.23831 -12.01178 -11.81520 -11.81172 -11.76758 -11.55926 -11.43037 -11.34495 -11.24850 -11.03996 -10.82699 -10.70753 -10.55616 -9.58886 -9.16783 -8.27650 -6.35683 1.39609 1.43478 1.52212 1.64279 1.85103 2.37876 2.82839 3.02501 3.10822 3.43683 3.57098 3.64376 3.73214 3.88974 3.96777 4.01625 4.05368 4.09952 4.19021 4.24968 4.29478 4.34389 4.35166 4.42210 4.44041 4.48754 4.52333 4.58255 4.60245 4.67745 4.69657 4.73644 4.77583 4.90226 4.91588 4.96736 4.99765 5.02749 5.09007 5.13407 5.17006 5.21550 5.30008 5.31855 5.37653 5.41688 5.49767 5.60236 6.00346 6.18340 6.28415 6.70482 6.89912 6.91417 7.26539 7.32221 8.88050 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.003699 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.459558 B = 7567.629724 C = 8525.227529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.107 4.107 4 C 0.054 3.946 5 N -0.530 5.530 6 C 0.091 3.909 7 H 0.104 0.896 8 C -0.104 4.104 9 C -0.102 4.102 10 C -0.088 4.088 11 H 0.073 0.927 12 C 0.120 3.880 13 H 0.065 0.935 14 O -0.574 6.574 15 C -0.175 4.175 16 C 0.093 3.907 17 H 0.089 0.911 18 C 0.540 3.460 19 O -0.566 6.566 20 N -0.649 5.649 21 C 0.099 3.901 22 C -0.016 4.016 23 C -0.512 4.512 24 H 0.040 0.960 25 C 0.021 3.979 26 N -0.944 5.944 27 Si 0.937 3.063 28 H -0.255 1.255 29 H -0.289 1.289 30 H -0.245 1.245 31 C 0.115 3.885 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.029 0.971 44 H 0.075 0.925 45 H 0.397 0.603 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.068 0.932 51 H 0.268 0.732 52 H 0.073 0.927 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.040 -4.778 -19.253 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.145 4.145 4 C -0.073 4.073 5 N -0.253 5.253 6 C -0.016 4.016 7 H 0.122 0.878 8 C -0.142 4.142 9 C -0.140 4.140 10 C -0.108 4.108 11 H 0.091 0.909 12 C 0.061 3.939 13 H 0.083 0.917 14 O -0.382 6.382 15 C -0.214 4.214 16 C -0.020 4.020 17 H 0.106 0.894 18 C 0.329 3.671 19 O -0.444 6.444 20 N -0.384 5.384 21 C -0.023 4.023 22 C -0.036 4.036 23 C -0.550 4.550 24 H 0.058 0.942 25 C -0.177 4.177 26 N -0.583 5.583 27 Si 0.760 3.240 28 H -0.180 1.180 29 H -0.216 1.216 30 H -0.168 1.168 31 C -0.007 4.007 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.093 0.907 45 H 0.247 0.753 46 H 0.118 0.882 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.086 0.914 51 H 0.077 0.923 52 H 0.091 0.909 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.600 -3.809 -18.214 27.760 hybrid contribution 0.875 -0.985 -0.327 1.357 sum -19.725 -4.793 -18.541 27.492 Atomic orbital electron populations 1.21746 0.95227 1.01968 1.01854 1.21470 0.96395 0.95742 1.02248 1.21556 0.93175 0.97422 1.02362 1.22347 0.96720 0.87188 1.01070 1.61345 1.10312 1.16994 1.36693 1.21644 1.00524 0.93137 0.86326 0.87826 1.21542 0.94568 0.96208 1.01876 1.21377 0.96996 0.95115 1.00530 1.21279 0.99852 0.96318 0.93342 0.90874 1.21613 0.92752 0.93656 0.85862 0.91674 1.86496 1.78692 1.54518 1.18522 1.23001 0.94923 1.02944 1.00530 1.21255 0.90296 0.99185 0.91238 0.89364 1.20653 0.79470 0.81195 0.85735 1.90596 1.45954 1.40133 1.67752 1.49972 1.14323 1.48735 1.25403 1.23498 0.83521 0.95185 1.00145 1.20734 0.94620 0.95087 0.93110 1.20919 0.93547 0.94934 1.45601 0.94164 1.25856 0.94573 1.03403 0.93887 1.70042 1.06565 1.32854 1.48854 0.85864 0.79827 0.78697 0.79577 1.17965 1.21563 1.16830 1.22930 0.93252 0.98788 0.85757 0.93388 0.92152 0.92120 0.90949 0.92632 0.93048 0.90769 0.92381 0.92281 0.89500 0.93196 0.95168 0.90676 0.75293 0.88150 0.89341 0.90593 0.89935 0.91374 0.92281 0.90920 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.64 5.93 30.59 0.18 -1.46 16 3 C -0.11 -1.79 5.12 30.60 0.16 -1.64 16 4 C 0.05 1.05 4.47 86.31 0.39 1.43 16 5 N -0.53 -13.11 3.87 -850.71 -3.29 -16.41 16 6 C 0.09 1.78 2.73 44.98 0.12 1.90 16 7 H 0.10 1.73 6.24 -2.39 -0.01 1.72 16 8 C -0.10 -2.43 5.91 30.67 0.18 -2.25 16 9 C -0.10 -2.81 5.33 30.72 0.16 -2.65 16 10 C -0.09 -2.27 2.57 -10.62 -0.03 -2.30 16 11 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 12 C 0.12 2.17 3.46 30.72 0.11 2.28 16 13 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 14 O -0.57 -9.97 12.42 -148.98 -1.85 -11.82 16 15 C -0.18 -2.42 5.27 30.67 0.16 -2.26 16 16 C 0.09 2.61 2.08 44.23 0.09 2.70 16 17 H 0.09 2.30 7.50 -2.39 -0.02 2.28 16 18 C 0.54 20.23 6.19 87.66 0.54 20.78 16 19 O -0.57 -25.03 17.06 -3.00 -0.05 -25.08 16 20 N -0.65 -25.00 3.69 -858.99 -3.17 -28.17 16 21 C 0.10 3.73 7.52 83.08 0.62 4.35 16 22 C -0.02 -0.70 2.98 -11.30 -0.03 -0.73 16 23 C -0.51 -27.21 9.38 25.60 0.24 -26.97 16 24 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 25 C 0.02 1.16 5.47 84.65 0.46 1.62 16 26 N -0.94 -55.88 13.96 21.45 0.30 -55.58 16 27 Si 0.94 40.17 27.42 68.60 1.88 42.05 16 28 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 29 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 30 H -0.24 -9.71 6.22 99.48 0.62 -9.09 16 31 C 0.12 4.78 8.18 83.17 0.68 5.46 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.06 6.43 -2.39 -0.02 1.04 16 39 H 0.06 0.89 6.21 -2.39 -0.01 0.87 16 40 H 0.06 1.33 8.03 -2.39 -0.02 1.31 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.03 1.02 7.10 -2.39 -0.02 1.00 16 44 H 0.07 1.97 7.60 -2.39 -0.02 1.95 16 45 H 0.40 3.05 9.09 -74.06 -0.67 2.38 16 46 H 0.10 1.06 7.91 -2.39 -0.02 1.04 16 47 H 0.09 0.96 6.43 -2.39 -0.02 0.94 16 48 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 49 H 0.08 3.14 8.10 -2.39 -0.02 3.12 16 50 H 0.07 2.96 6.50 -2.39 -0.02 2.94 16 51 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 52 H 0.07 3.05 8.10 -2.39 -0.02 3.03 16 53 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -69.21 400.64 -1.30 -70.52 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.13 Total: 25.36 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 4.75 Total: -0.87 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -6.16 Total: -100.16 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.90 Total: -36.90 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.88 Total: 42.05 kcal Total: -69.21 -1.30 -70.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278225002.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.977 kcal (2) G-P(sol) polarization free energy of solvation -69.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds