Wall clock time and date at job start Tue Mar 31 2020 20:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99932 * 2 1 4 4 C 1.53006 * 109.47248 * 125.00349 * 3 2 1 5 5 O 1.42897 * 109.47437 * 180.02562 * 4 3 2 6 6 C 1.42900 * 113.99955 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46816 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00273 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99658 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63223 * 6.48509 * 9 7 6 11 11 C 1.53188 * 108.77339 * 233.58711 * 10 9 7 12 12 C 1.53045 * 109.31440 * 305.36254 * 11 10 9 13 13 C 1.53043 * 109.53693 * 61.36623 * 12 11 10 14 14 C 1.46926 * 120.62670 * 186.46293 * 9 7 6 15 15 H 1.09006 * 109.70264 * 246.27159 * 14 9 7 16 16 C 1.53002 * 109.59093 * 6.62242 * 14 9 7 17 17 H 1.09000 * 109.87249 * 302.25211 * 16 14 9 18 18 C 1.54324 * 109.87820 * 63.26969 * 16 14 9 19 19 C 1.55154 * 102.94473 * 141.76676 * 18 16 14 20 20 C 1.54909 * 101.61207 * 324.47538 * 19 18 16 21 21 N 1.47014 * 110.01108 * 181.14935 * 16 14 9 22 22 C 1.36940 * 125.64968 * 61.53909 * 21 16 14 23 23 H 1.08007 * 119.99748 * 14.64728 * 22 21 16 24 24 C 1.38813 * 120.00458 * 194.65403 * 22 21 16 25 25 N 1.31620 * 119.99517 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00087 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47153 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47126 * 119.99971 * 26 24 22 29 29 H 1.48505 * 109.46567 * 239.99722 * 26 24 22 30 30 H 1.08000 * 120.00009 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99812 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00163 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47405 * 5.00697 * 3 2 1 34 34 H 1.09001 * 109.47363 * 245.00287 * 3 2 1 35 35 H 1.09002 * 109.46758 * 60.00284 * 4 3 2 36 36 H 1.09001 * 109.46888 * 300.00229 * 4 3 2 37 37 H 1.09000 * 109.46807 * 60.00054 * 6 5 4 38 38 H 1.08998 * 109.47263 * 300.00123 * 6 5 4 39 39 H 1.08999 * 109.58614 * 113.79666 * 10 9 7 40 40 H 1.09000 * 109.58409 * 353.36817 * 10 9 7 41 41 H 1.08999 * 109.49584 * 185.41377 * 11 10 9 42 42 H 1.09001 * 109.50165 * 65.31539 * 11 10 9 43 43 H 1.09002 * 109.45896 * 301.35111 * 12 11 10 44 44 H 1.08994 * 109.45284 * 181.37896 * 12 11 10 45 45 H 1.08998 * 109.49903 * 178.68551 * 13 12 11 46 46 H 1.09000 * 109.52083 * 58.60107 * 13 12 11 47 47 H 1.08999 * 110.72380 * 23.39463 * 18 16 14 48 48 H 1.09007 * 110.71890 * 260.12781 * 18 16 14 49 49 H 1.08997 * 111.00222 * 82.56468 * 19 18 16 50 50 H 1.08996 * 111.00562 * 206.38487 * 19 18 16 51 51 H 1.09008 * 110.36540 * 155.86739 * 20 19 18 52 52 H 1.09000 * 110.36859 * 278.18626 * 20 19 18 53 53 H 0.97002 * 119.99474 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 8 3.7492 2.5709 1.1820 6 6 4.6878 2.7000 2.2517 7 6 5.3799 4.0352 2.1542 8 8 5.0968 4.8009 1.2573 9 7 6.3134 4.3783 3.0638 10 6 6.7695 3.4099 4.0703 11 6 6.6174 4.0353 5.4604 12 6 7.3568 5.3747 5.4966 13 6 6.7414 6.3270 4.4687 14 6 6.8947 5.7277 3.0673 15 1 7.9518 5.6731 2.8069 16 6 6.1609 6.6050 2.0510 17 1 6.2227 6.1551 1.0601 18 6 4.6826 6.7628 2.4647 19 6 4.3758 8.2397 2.1017 20 6 5.7244 8.9279 2.4293 21 7 6.7534 7.9503 2.0272 22 6 8.0466 8.2469 1.6885 23 1 8.6560 7.5100 1.1863 24 6 8.5746 9.4947 1.9907 25 7 7.8319 10.3928 2.6024 26 14 10.3385 9.8995 1.5280 27 1 10.9546 8.7286 0.8538 28 1 10.3539 11.0654 0.6085 29 1 11.1094 10.2261 2.7546 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0897 34 1 2.6212 1.4027 -0.9314 35 1 3.7401 0.5066 1.0919 36 1 2.4773 1.2355 2.1130 37 1 5.4273 1.9021 2.1844 38 1 4.1641 2.6306 3.2051 39 1 7.8164 3.1640 3.8927 40 1 6.1639 2.5058 4.0081 41 1 7.0410 3.3656 6.2089 42 1 5.5607 4.1972 5.6730 43 1 8.4088 5.2153 5.2596 44 1 7.2707 5.8101 6.4921 45 1 7.2532 7.2884 4.5112 46 1 5.6835 6.4679 4.6903 47 1 4.5616 6.5955 3.5349 48 1 4.0478 6.0854 1.8933 49 1 4.1331 8.3397 1.0438 50 1 3.5735 8.6364 2.7237 51 1 5.8297 9.8486 1.8553 52 1 5.7948 9.1355 3.4971 53 1 8.2009 11.2646 2.8139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317206523.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:14 Heat of formation + Delta-G solvation = -24.710366 kcal Electronic energy + Delta-G solvation = -31276.664669 eV Core-core repulsion = 27343.086940 eV Total energy + Delta-G solvation = -3933.577729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.89299 -39.39032 -38.38797 -38.02451 -35.85335 -34.54097 -33.83212 -32.67529 -31.17059 -30.65973 -28.90878 -28.06934 -26.51259 -25.53775 -24.13354 -23.82572 -22.29008 -21.67754 -21.29770 -20.64859 -19.57128 -18.99238 -17.74021 -17.47745 -17.42693 -16.86450 -16.58640 -16.31006 -16.10940 -15.71789 -15.66310 -15.23239 -15.11331 -14.75165 -14.57907 -14.37528 -14.17232 -13.90979 -13.87575 -13.52003 -13.42879 -13.00790 -12.95911 -12.79095 -12.71965 -12.53825 -12.43147 -12.11063 -12.01245 -11.96000 -11.91729 -11.87791 -11.65139 -11.57116 -11.30541 -11.18380 -11.11181 -10.68062 -10.58924 -10.24452 -10.00104 -9.35847 -8.67327 -7.82641 -5.18418 1.36387 1.42971 1.44109 1.54392 1.69360 1.84598 2.50485 2.91291 3.34040 3.63285 3.79013 3.93061 3.95428 4.01587 4.04695 4.13444 4.18922 4.21657 4.22726 4.30203 4.33316 4.36083 4.38556 4.47473 4.49054 4.53028 4.57736 4.71178 4.80315 4.86032 4.90369 4.94149 5.03709 5.05958 5.07140 5.11663 5.14043 5.23090 5.28212 5.31316 5.36008 5.48810 5.54337 5.62338 5.69546 5.75127 5.77174 5.86658 5.89180 6.17691 6.27720 6.62318 7.13715 7.36969 7.84274 8.54050 9.28417 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.003060 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.878059 B = 9147.373163 C = 9956.078340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C -0.096 4.096 4 C 0.064 3.936 5 O -0.399 6.399 6 C 0.054 3.946 7 C 0.490 3.510 8 O -0.541 6.541 9 N -0.603 5.603 10 C 0.099 3.901 11 C -0.124 4.124 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.152 3.848 15 H 0.042 0.958 16 C 0.162 3.838 17 H 0.046 0.954 18 C -0.108 4.108 19 C -0.141 4.141 20 C 0.186 3.814 21 N -0.612 5.612 22 C -0.229 4.229 23 H 0.067 0.933 24 C -0.060 4.060 25 N -0.946 5.946 26 Si 0.970 3.030 27 H -0.270 1.270 28 H -0.294 1.294 29 H -0.289 1.289 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.039 0.961 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.087 0.913 49 H 0.049 0.951 50 H 0.077 0.923 51 H 0.028 0.972 52 H -0.001 1.001 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.880 -25.122 5.831 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.175 4.175 3 C -0.133 4.133 4 C -0.012 4.012 5 O -0.318 6.318 6 C -0.025 4.025 7 C 0.279 3.721 8 O -0.419 6.419 9 N -0.338 5.338 10 C -0.022 4.022 11 C -0.162 4.162 12 C -0.155 4.155 13 C -0.149 4.149 14 C 0.047 3.953 15 H 0.060 0.940 16 C 0.056 3.944 17 H 0.063 0.937 18 C -0.145 4.145 19 C -0.180 4.180 20 C 0.061 3.939 21 N -0.337 5.337 22 C -0.358 4.358 23 H 0.084 0.916 24 C -0.254 4.254 25 N -0.594 5.594 26 Si 0.799 3.201 27 H -0.194 1.194 28 H -0.221 1.221 29 H -0.215 1.215 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.105 0.895 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.047 0.953 52 H 0.017 0.983 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.924 -24.438 5.212 26.886 hybrid contribution 1.265 1.108 -0.233 1.697 sum -8.660 -23.330 4.978 25.379 Atomic orbital electron populations 1.24078 0.95964 1.02668 0.99928 1.22827 0.96125 0.97666 1.00930 1.20644 0.97857 0.96447 0.98360 1.22630 0.94209 0.85353 0.98973 1.87978 1.55134 1.39207 1.49528 1.22327 0.93387 0.94361 0.92404 1.20932 0.80001 0.89155 0.82039 1.90700 1.63971 1.52072 1.35123 1.48235 1.40220 1.13063 1.32311 1.22111 1.01486 0.91580 0.87027 1.21892 1.01315 0.96113 0.96859 1.21531 0.99537 0.96107 0.98332 1.21719 1.00662 0.98427 0.94126 1.21531 0.96058 0.81099 0.96625 0.93988 1.21607 0.91832 0.84542 0.96439 0.93667 1.22926 0.95915 0.95789 0.99881 1.22919 0.97852 0.97131 1.00098 1.21112 0.85606 0.91800 0.95419 1.44920 1.08006 1.01930 1.78836 1.19225 0.87976 0.98704 1.29898 0.91557 1.25622 1.01662 0.97214 1.00883 1.70161 1.36241 1.05762 1.47278 0.85127 0.80309 0.77615 0.77035 1.19435 1.22111 1.21545 0.88828 0.86762 0.85598 0.91864 0.91076 0.91183 0.91669 0.87632 0.87635 0.90615 0.86413 0.87633 0.91231 0.92468 0.91317 0.94203 0.92194 0.91816 0.89529 0.93257 0.90470 0.95342 0.98273 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 14.32 67.78 0.97 -1.25 16 2 C -0.16 -1.96 9.52 25.65 0.24 -1.72 16 3 C -0.10 -1.60 6.03 29.85 0.18 -1.42 16 4 C 0.06 1.02 5.92 71.98 0.43 1.44 16 5 O -0.40 -9.83 9.88 -129.94 -1.28 -11.12 16 6 C 0.05 1.06 4.78 71.24 0.34 1.40 16 7 C 0.49 14.85 6.93 87.66 0.61 15.46 16 8 O -0.54 -22.09 9.75 16.00 0.16 -21.93 16 9 N -0.60 -17.20 2.93 -795.02 -2.33 -19.54 16 10 C 0.10 1.71 6.35 86.36 0.55 2.26 16 11 C -0.12 -2.07 6.08 30.67 0.19 -1.89 16 12 C -0.12 -3.01 5.88 30.62 0.18 -2.83 16 13 C -0.11 -4.04 4.96 30.67 0.15 -3.88 16 14 C 0.15 5.89 2.67 44.98 0.12 6.01 16 15 H 0.04 1.84 7.95 -2.38 -0.02 1.82 16 16 C 0.16 7.54 2.29 45.34 0.10 7.65 16 17 H 0.05 2.42 5.89 -7.37 -0.04 2.37 16 18 C -0.11 -4.50 4.90 31.78 0.16 -4.34 16 19 C -0.14 -6.26 7.08 31.98 0.23 -6.03 16 20 C 0.19 10.02 5.41 86.84 0.47 10.49 16 21 N -0.61 -33.62 2.60 -668.00 -1.74 -35.36 16 22 C -0.23 -13.47 9.79 84.03 0.82 -12.65 16 23 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 24 C -0.06 -3.57 5.47 84.86 0.46 -3.11 16 25 N -0.95 -58.67 10.57 21.65 0.23 -58.44 16 26 Si 0.97 47.61 29.55 68.60 2.03 49.64 16 27 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 28 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 29 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 30 H 0.09 1.16 7.84 -2.91 -0.02 1.14 16 31 H 0.11 0.96 8.06 -2.91 -0.02 0.93 16 32 H 0.13 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.06 1.21 7.79 -2.39 -0.02 1.19 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.11 1.36 7.68 -2.39 -0.02 1.34 16 38 H 0.11 1.40 7.95 -2.39 -0.02 1.38 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.12 1.09 5.93 -2.39 -0.01 1.07 16 41 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.04 1.84 7.87 -2.39 -0.02 1.82 16 46 H 0.06 2.16 5.72 -2.39 -0.01 2.15 16 47 H 0.06 2.47 5.46 -2.39 -0.01 2.45 16 48 H 0.09 3.66 5.56 -6.39 -0.04 3.62 16 49 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 51 H 0.03 1.71 6.93 -2.38 -0.02 1.70 16 52 H 0.00 -0.04 8.06 -2.39 -0.02 -0.06 16 53 H 0.25 14.79 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -77.54 399.30 4.07 -73.47 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.81 Total: 17.68 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.20 Total: 5.60 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -3.84 Total: -113.33 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -1.13 Total: -33.05 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -77.54 4.07 -73.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317206523.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.759 kcal (2) G-P(sol) polarization free energy of solvation -77.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds