Wall clock time and date at job start Tue Mar 31 2020 20:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00151 * 2 1 4 4 C 1.53002 * 109.47027 * 125.27338 * 3 2 1 5 5 O 1.42896 * 109.47231 * 180.02562 * 4 3 2 6 6 C 1.42904 * 114.00446 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47386 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00033 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99962 * 179.97438 * 7 6 5 10 10 C 1.46930 * 120.62801 * 354.76590 * 9 7 6 11 11 C 1.52756 * 109.00432 * 233.57731 * 10 9 7 12 12 C 1.53037 * 109.38876 * 305.59158 * 11 10 9 13 13 C 1.53039 * 109.53892 * 61.23930 * 12 11 10 14 14 C 1.46921 * 120.62939 * 175.03885 * 9 7 6 15 15 H 1.09004 * 109.59099 * 246.15734 * 14 9 7 16 16 C 1.52998 * 109.58882 * 6.58603 * 14 9 7 17 17 H 1.09003 * 109.87000 * 312.41004 * 16 14 9 18 18 C 1.54325 * 109.88407 * 191.39814 * 16 14 9 19 19 C 1.55159 * 102.94239 * 218.39036 * 18 16 14 20 20 C 1.54906 * 101.57984 * 35.50082 * 19 18 16 21 21 N 1.47019 * 109.88321 * 73.59064 * 16 14 9 22 22 C 1.36940 * 125.64371 * 298.30953 * 21 16 14 23 23 H 1.08004 * 120.00252 * 46.93417 * 22 21 16 24 24 C 1.38811 * 120.00071 * 226.92899 * 22 21 16 25 25 N 1.31624 * 120.00100 * 208.91791 * 24 22 21 26 26 Si 1.86800 * 119.99917 * 28.91217 * 24 22 21 27 27 H 1.48504 * 109.46988 * 92.33905 * 26 24 22 28 28 H 1.48506 * 109.46975 * 212.33518 * 26 24 22 29 29 H 1.48499 * 109.47213 * 332.33729 * 26 24 22 30 30 H 1.08002 * 119.99307 * 359.72749 * 1 2 3 31 31 H 1.07993 * 120.00190 * 179.72108 * 1 2 3 32 32 H 1.07997 * 119.99949 * 180.27536 * 2 1 3 33 33 H 1.08997 * 109.47475 * 245.27307 * 3 2 1 34 34 H 1.08997 * 109.46870 * 5.27500 * 3 2 1 35 35 H 1.09003 * 109.47346 * 300.00148 * 4 3 2 36 36 H 1.08997 * 109.47163 * 60.00341 * 4 3 2 37 37 H 1.08996 * 109.46826 * 300.00796 * 6 5 4 38 38 H 1.09002 * 109.46514 * 60.00041 * 6 5 4 39 39 H 1.08998 * 109.59001 * 353.41292 * 10 9 7 40 40 H 1.09000 * 109.58543 * 113.84505 * 10 9 7 41 41 H 1.09002 * 109.56850 * 185.55145 * 11 10 9 42 42 H 1.09009 * 109.38628 * 65.51686 * 11 10 9 43 43 H 1.09004 * 109.46033 * 301.22043 * 12 11 10 44 44 H 1.08998 * 109.45431 * 181.25533 * 12 11 10 45 45 H 1.09003 * 109.49947 * 178.68878 * 13 12 11 46 46 H 1.08991 * 109.49891 * 58.58883 * 13 12 11 47 47 H 1.09000 * 110.71740 * 336.75075 * 18 16 14 48 48 H 1.08999 * 110.72360 * 100.02624 * 18 16 14 49 49 H 1.09002 * 111.00313 * 153.57545 * 19 18 16 50 50 H 1.09001 * 111.00110 * 277.38911 * 19 18 16 51 51 H 1.09001 * 110.36916 * 81.83278 * 20 19 18 52 52 H 1.09002 * 110.36195 * 204.04470 * 20 19 18 53 53 H 0.96999 * 120.00105 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0400 1.3302 1.1777 5 8 3.7541 2.5679 1.1781 6 6 4.6972 2.6946 2.2442 7 6 5.3888 4.0300 2.1471 8 8 5.1021 4.7978 1.2531 9 7 6.3254 4.3713 3.0542 10 6 6.6017 3.5040 4.2075 11 6 6.4871 4.3281 5.4885 12 6 7.4006 5.5519 5.3887 13 6 6.9611 6.4240 4.2104 14 6 7.0851 5.6208 2.9118 15 1 8.1338 5.3913 2.7228 16 6 6.5178 6.4363 1.7482 17 1 6.3877 5.7960 0.8757 18 6 7.4728 7.5997 1.4077 19 6 6.5001 8.7620 1.0757 20 6 5.3462 8.4969 2.0746 21 7 5.2287 7.0286 2.1343 22 6 4.1048 6.3316 2.4896 23 1 4.1749 5.5171 3.1953 24 6 2.8752 6.6721 1.9428 25 7 1.7697 6.4579 2.6244 26 14 2.7893 7.4344 0.2396 27 1 2.6081 6.3637 -0.7734 28 1 1.6423 8.3755 0.1757 29 1 4.0492 8.1700 -0.0376 30 1 -0.5399 0.9354 0.0044 31 1 -0.5400 -0.9352 -0.0046 32 1 1.8500 -0.9353 -0.0045 33 1 2.6175 1.4048 -0.9334 34 1 1.3590 2.1314 0.0945 35 1 2.4860 1.2305 2.1112 36 1 3.7445 0.5039 1.0832 37 1 4.1773 2.6229 3.1995 38 1 5.4364 1.8968 2.1720 39 1 5.8787 2.6887 4.2332 40 1 7.6102 3.0984 4.1263 41 1 6.7860 3.7197 6.3421 42 1 5.4550 4.6542 5.6179 43 1 8.4293 5.2256 5.2352 44 1 7.3366 6.1289 6.3113 45 1 7.5976 7.3071 4.1541 46 1 5.9247 6.7302 4.3512 47 1 8.0955 7.8513 2.2663 48 1 8.0883 7.3529 0.5427 49 1 6.9670 9.7285 1.2656 50 1 6.1492 8.6956 0.0459 51 1 5.5953 8.8978 3.0571 52 1 4.4192 8.9387 1.7092 53 1 0.9106 6.6962 2.2424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317206525.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:18 Heat of formation + Delta-G solvation = -7.322319 kcal Electronic energy + Delta-G solvation = -32522.033278 eV Core-core repulsion = 28589.209551 eV Total energy + Delta-G solvation = -3932.823727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.67957 -39.31862 -38.29842 -37.81364 -35.88558 -34.42066 -33.60005 -32.64502 -31.54585 -30.68243 -28.94336 -28.19710 -26.14866 -25.35059 -24.04647 -23.76443 -22.05667 -21.82709 -21.00786 -20.72410 -19.58954 -18.87631 -17.97361 -17.44204 -17.27034 -17.13493 -16.41645 -16.28563 -15.90122 -15.76755 -15.26941 -15.11971 -14.95196 -14.68433 -14.52742 -14.39776 -14.26803 -13.99346 -13.82857 -13.59904 -13.49364 -13.14929 -12.97854 -12.67368 -12.57251 -12.45750 -12.29412 -12.18868 -12.14549 -12.02291 -11.88334 -11.75815 -11.59374 -11.49366 -11.47342 -11.23968 -11.12602 -10.61032 -10.33000 -10.31493 -9.50163 -9.08470 -8.12594 -7.98799 -5.27290 1.30477 1.31693 1.42419 1.51815 1.98583 2.19331 2.59996 3.03549 3.33294 3.64693 3.79583 3.95437 3.98471 4.07551 4.13473 4.16026 4.17960 4.22270 4.24915 4.27022 4.30241 4.40144 4.42514 4.42717 4.45473 4.57241 4.58567 4.73840 4.79312 4.86887 4.89626 4.97040 5.00720 5.02485 5.06266 5.09418 5.12468 5.18351 5.25027 5.28142 5.34715 5.42301 5.49246 5.64858 5.70122 5.84286 5.84990 6.04242 6.18164 6.28419 6.40336 6.86039 7.20906 7.78957 7.81844 8.54305 9.16273 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010485 B = 0.005153 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.950624 B = 5432.568998 C = 7034.803921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.152 4.152 3 C -0.096 4.096 4 C 0.066 3.934 5 O -0.399 6.399 6 C 0.057 3.943 7 C 0.478 3.522 8 O -0.487 6.487 9 N -0.609 5.609 10 C 0.108 3.892 11 C -0.131 4.131 12 C -0.110 4.110 13 C -0.119 4.119 14 C 0.151 3.849 15 H 0.085 0.915 16 C 0.127 3.873 17 H 0.061 0.939 18 C -0.120 4.120 19 C -0.126 4.126 20 C 0.123 3.877 21 N -0.597 5.597 22 C -0.132 4.132 23 H 0.047 0.953 24 C -0.019 4.019 25 N -0.950 5.950 26 Si 0.910 3.090 27 H -0.322 1.322 28 H -0.319 1.319 29 H -0.244 1.244 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.031 0.969 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.044 0.956 51 H 0.030 0.970 52 H 0.010 0.990 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.705 -11.397 3.402 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.170 4.170 3 C -0.134 4.134 4 C -0.010 4.010 5 O -0.319 6.319 6 C -0.022 4.022 7 C 0.266 3.734 8 O -0.361 6.361 9 N -0.346 5.346 10 C -0.014 4.014 11 C -0.170 4.170 12 C -0.147 4.147 13 C -0.158 4.158 14 C 0.046 3.954 15 H 0.102 0.898 16 C 0.021 3.979 17 H 0.078 0.922 18 C -0.159 4.159 19 C -0.164 4.164 20 C -0.002 4.002 21 N -0.322 5.322 22 C -0.262 4.262 23 H 0.064 0.936 24 C -0.213 4.213 25 N -0.597 5.597 26 Si 0.743 3.257 27 H -0.252 1.252 28 H -0.248 1.248 29 H -0.168 1.168 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.156 0.844 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.050 0.950 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.111 0.889 50 H 0.062 0.938 51 H 0.048 0.952 52 H 0.028 0.972 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 13.294 -10.868 2.780 17.395 hybrid contribution -1.430 0.466 -0.833 1.719 sum 11.864 -10.403 1.947 15.898 Atomic orbital electron populations 1.24086 0.96032 1.02562 1.00107 1.22826 0.96069 0.97331 1.00751 1.20644 0.97740 0.96485 0.98490 1.22568 0.94269 0.85828 0.98305 1.88029 1.55180 1.39060 1.49591 1.22263 0.92594 0.96472 0.90895 1.20231 0.80819 0.88173 0.84205 1.90738 1.59608 1.49448 1.36270 1.47810 1.38689 1.23013 1.25075 1.21780 1.02631 0.92522 0.84457 1.21801 0.99266 0.97847 0.98045 1.21467 0.99579 0.96044 0.97617 1.21807 1.01434 0.98147 0.94399 1.21709 0.93899 0.83429 0.96345 0.89751 1.22006 0.85592 0.94304 0.95956 0.92215 1.22685 0.96760 0.94600 1.01836 1.22692 0.96266 0.99526 0.97925 1.21873 0.95965 0.85937 0.96420 1.44719 1.08447 1.00208 1.78866 1.17867 0.83026 1.12114 1.13189 0.93610 1.25979 0.95782 1.00490 0.99028 1.70021 0.98021 1.54369 1.37323 0.86228 0.76561 0.76275 0.86668 1.25204 1.24751 1.16785 0.89910 0.85736 0.84445 0.90683 0.93797 0.93380 0.90267 0.91399 0.87938 0.89887 0.88840 0.88369 0.95015 0.89974 0.91969 0.91079 0.93873 0.89446 0.90439 0.88863 0.93756 0.95203 0.97154 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.17 14.32 67.78 0.97 -3.20 16 2 C -0.15 -3.43 9.52 25.65 0.24 -3.19 16 3 C -0.10 -2.92 6.03 29.85 0.18 -2.74 16 4 C 0.07 2.02 5.92 71.98 0.43 2.44 16 5 O -0.40 -16.52 9.88 -129.94 -1.28 -17.80 16 6 C 0.06 1.98 4.82 71.23 0.34 2.33 16 7 C 0.48 19.74 5.37 87.66 0.47 20.21 16 8 O -0.49 -25.13 9.14 16.01 0.15 -24.98 16 9 N -0.61 -20.23 2.58 -795.86 -2.05 -22.28 16 10 C 0.11 2.51 6.30 86.22 0.54 3.05 16 11 C -0.13 -3.09 6.06 30.53 0.19 -2.91 16 12 C -0.11 -2.53 5.89 30.62 0.18 -2.35 16 13 C -0.12 -3.69 4.95 30.67 0.15 -3.54 16 14 C 0.15 4.87 2.54 44.98 0.11 4.99 16 15 H 0.08 2.24 8.11 -2.38 -0.02 2.22 16 16 C 0.13 5.05 2.30 45.34 0.10 5.15 16 17 H 0.06 2.84 5.40 -48.06 -0.26 2.58 16 18 C -0.12 -3.75 6.33 31.78 0.20 -3.55 16 19 C -0.13 -4.42 6.97 31.99 0.22 -4.20 16 20 C 0.12 5.45 6.01 86.86 0.52 5.98 16 21 N -0.60 -28.96 1.14 -668.27 -0.76 -29.72 16 22 C -0.13 -7.62 5.67 84.03 0.48 -7.15 16 23 H 0.05 2.84 5.92 -2.91 -0.02 2.83 16 24 C -0.02 -1.17 5.34 84.86 0.45 -0.72 16 25 N -0.95 -63.59 13.97 21.65 0.30 -63.29 16 26 Si 0.91 53.26 26.82 68.60 1.84 55.10 16 27 H -0.32 -20.10 7.11 99.48 0.71 -19.39 16 28 H -0.32 -18.74 7.11 99.48 0.71 -18.03 16 29 H -0.24 -13.29 4.93 99.48 0.49 -12.80 16 30 H 0.08 2.05 7.84 -2.91 -0.02 2.03 16 31 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.04 1.61 7.79 -2.39 -0.02 1.59 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 2.29 7.47 -2.39 -0.02 2.27 16 38 H 0.10 2.57 8.12 -2.39 -0.02 2.55 16 39 H 0.08 1.76 5.96 -2.39 -0.01 1.74 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.03 0.99 8.14 -2.38 -0.02 0.98 16 43 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.07 1.97 6.97 -2.39 -0.02 1.95 16 46 H 0.04 1.79 6.54 -2.39 -0.02 1.78 16 47 H 0.09 2.25 6.63 -2.39 -0.02 2.24 16 48 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 50 H 0.04 1.71 7.39 -2.39 -0.02 1.69 16 51 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.01 0.51 5.43 -2.39 -0.01 0.49 16 53 H 0.25 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -82.85 390.57 4.39 -78.46 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.41 Total: 13.88 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 5.79 Total: 10.62 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -2.51 Total: -115.29 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.14 Total: -42.78 kcal Atomic # 14 Polarization: 53.26 SS G_CDS: 1.84 Total: 55.10 kcal Total: -82.85 4.39 -78.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317206525.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.142 kcal (2) G-P(sol) polarization free energy of solvation -82.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds