Wall clock time and date at job start Tue Mar 31 2020 20:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00423 * 2 1 4 4 C 1.53007 * 109.47028 * 240.00265 * 3 2 1 5 5 O 1.42900 * 109.47108 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.47501 * 120.00156 * 3 2 1 7 7 C 1.50695 * 109.47167 * 180.02562 * 6 3 2 8 8 O 1.21278 * 120.00170 * 359.97438 * 7 6 3 9 9 N 1.34784 * 119.99790 * 179.97438 * 7 6 3 10 10 C 1.44571 * 118.78890 * 0.02562 * 9 7 6 11 11 C 1.54685 * 109.63614 * 270.64107 * 10 9 7 12 12 C 1.47025 * 110.63888 * 288.15745 * 11 10 9 13 13 C 1.53104 * 114.31005 * 62.87985 * 12 11 10 14 14 C 1.50562 * 109.09678 * 276.13206 * 13 12 11 15 15 C 1.53939 * 111.50549 * 214.29199 * 14 13 12 16 16 C 1.54147 * 104.89484 * 98.52452 * 15 14 13 17 17 N 1.47517 * 107.06765 * 358.23751 * 16 15 14 18 18 C 1.36937 * 126.98409 * 205.30990 * 17 16 15 19 19 H 1.07997 * 119.99740 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99954 * 0.02562 * 18 17 16 21 21 N 1.31616 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99737 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47204 * 89.99667 * 22 20 18 24 24 H 1.48493 * 109.47185 * 210.00016 * 22 20 18 25 25 H 1.48502 * 109.46841 * 329.99762 * 22 20 18 26 26 C 1.48219 * 106.02456 * 25.30867 * 17 16 15 27 27 C 1.47590 * 118.78746 * 180.02562 * 9 7 6 28 28 H 1.07998 * 120.00628 * 179.97438 * 1 2 3 29 29 H 1.08005 * 119.99347 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99919 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46570 * 299.99387 * 4 3 2 32 32 H 1.08994 * 109.47179 * 59.99857 * 4 3 2 33 33 H 1.08998 * 109.47066 * 179.97438 * 4 3 2 34 34 H 0.96701 * 113.99727 * 60.00014 * 5 3 2 35 35 H 1.09003 * 109.47123 * 59.99596 * 6 3 2 36 36 H 1.09004 * 109.46461 * 300.00012 * 6 3 2 37 37 H 1.08994 * 109.44583 * 30.68958 * 10 9 7 38 38 H 1.09003 * 109.44424 * 150.62759 * 10 9 7 39 39 H 1.09004 * 109.24431 * 48.44978 * 11 10 9 40 40 H 1.08998 * 109.24676 * 167.85746 * 11 10 9 41 41 H 1.09001 * 108.50981 * 184.13797 * 12 11 10 42 42 H 1.08998 * 108.51286 * 301.63801 * 12 11 10 43 43 H 1.08997 * 109.54683 * 156.24499 * 13 12 11 44 44 H 1.09000 * 109.52616 * 36.00682 * 13 12 11 45 45 H 1.09005 * 110.35526 * 339.67180 * 15 14 13 46 46 H 1.09004 * 110.35369 * 217.37936 * 15 14 13 47 47 H 1.09004 * 109.91459 * 117.59069 * 16 15 14 48 48 H 1.08997 * 109.91410 * 238.88064 * 16 15 14 49 49 H 0.97000 * 119.99589 * 179.97438 * 21 20 18 50 50 H 1.08999 * 110.66807 * 79.85352 * 26 17 16 51 51 H 1.09000 * 110.66661 * 202.82028 * 26 17 16 52 52 H 1.09001 * 108.99234 * 17.44743 * 27 9 7 53 53 H 1.09001 * 108.99104 * 258.70463 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9432 1.3860 -1.2493 5 8 1.1350 2.3913 -0.0006 6 6 2.9432 1.3861 1.2492 7 6 3.6963 2.6914 1.2494 8 8 3.5447 3.4791 0.3398 9 7 4.5383 2.9834 2.2606 10 6 4.6994 2.0253 3.3311 11 6 3.6536 2.3007 4.4371 12 6 3.9898 3.5276 5.1743 13 6 3.9750 4.7992 4.3218 14 6 5.2991 4.9361 3.6184 15 6 5.7112 6.4122 3.4734 16 6 6.6985 6.6634 4.6302 17 7 6.7926 5.4082 5.3994 18 6 7.1344 5.2741 6.7187 19 1 7.1684 4.2939 7.1707 20 6 7.4371 6.3981 7.4749 21 7 7.3961 7.5927 6.9239 22 14 7.9041 6.2150 9.2744 23 1 9.3750 6.0470 9.3894 24 1 7.4846 7.4284 10.0205 25 1 7.2237 5.0240 9.8435 26 6 6.4419 4.3218 4.4541 27 6 5.2617 4.2696 2.2341 28 1 -0.5401 -0.9352 -0.0004 29 1 -0.5399 0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.6515 0.5575 -1.2492 32 1 2.3165 1.3283 -2.1392 33 1 3.4879 2.3301 -1.2496 34 1 0.5434 2.4034 0.7642 35 1 3.6515 0.5575 1.2492 36 1 2.3165 1.3284 2.1391 37 1 4.5577 1.0176 2.9406 38 1 5.7018 2.1145 3.7501 39 1 2.6699 2.4138 3.9812 40 1 3.6333 1.4595 5.1299 41 1 3.2757 3.6484 5.9889 42 1 4.9843 3.4111 5.6048 43 1 3.8114 5.6658 4.9624 44 1 3.1754 4.7339 3.5839 45 1 4.8402 7.0604 3.5709 46 1 6.2016 6.5765 2.5139 47 1 7.6777 6.9289 4.2315 48 1 6.3256 7.4636 5.2695 49 1 7.6074 8.3780 7.4525 50 1 7.2928 4.0747 3.8193 51 1 6.0965 3.4395 4.9930 52 1 4.7677 4.9401 1.5309 53 1 6.2835 4.0949 1.8972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324549628.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:08 Heat of formation + Delta-G solvation = -35.124226 kcal Electronic energy + Delta-G solvation = -31717.253266 eV Core-core repulsion = 27783.223958 eV Total energy + Delta-G solvation = -3934.029308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.93020 -40.42333 -38.73984 -37.30366 -34.99305 -34.47905 -33.90651 -32.60953 -31.91037 -30.45252 -29.20172 -28.23353 -27.04922 -26.20272 -24.64838 -23.56772 -22.68375 -21.51748 -20.53327 -19.84619 -19.42816 -18.81446 -18.09132 -17.81589 -17.33852 -16.86500 -16.68741 -16.21077 -15.89715 -15.62250 -15.34606 -15.22671 -14.96567 -14.60253 -14.41694 -14.11829 -13.96184 -13.72961 -13.47937 -13.29202 -13.18365 -13.08592 -13.04817 -12.87623 -12.72417 -12.56821 -12.46930 -12.41092 -12.14526 -12.00117 -11.93037 -11.91418 -11.69201 -11.45192 -11.26809 -11.17057 -11.03943 -10.71420 -10.62844 -10.39746 -10.25659 -9.48498 -8.86799 -7.73543 -5.15796 1.36356 1.47840 1.49345 1.57609 1.77229 2.12658 2.52075 3.37202 3.37637 3.50414 3.66212 3.76799 3.82057 3.92401 3.93935 4.06539 4.09420 4.15144 4.18131 4.31539 4.43815 4.45698 4.56337 4.59379 4.65029 4.67570 4.70465 4.81635 4.85950 4.87788 4.91328 4.93669 4.96080 4.98933 5.05457 5.19160 5.22409 5.24081 5.29648 5.40399 5.41598 5.45558 5.55052 5.63120 5.70778 5.72994 5.75074 5.84563 5.87302 6.32872 6.57556 6.90147 7.11579 7.36264 7.80126 8.51373 9.30325 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.002845 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.393388 B = 9839.267476 C =10340.174021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.188 4.188 3 C 0.172 3.828 4 C -0.148 4.148 5 O -0.564 6.564 6 C -0.156 4.156 7 C 0.506 3.494 8 O -0.564 6.564 9 N -0.599 5.599 10 C 0.097 3.903 11 C -0.124 4.124 12 C -0.136 4.136 13 C -0.075 4.075 14 C -0.068 4.068 15 C -0.122 4.122 16 C 0.153 3.847 17 N -0.615 5.615 18 C -0.220 4.220 19 H 0.088 0.912 20 C -0.073 4.073 21 N -0.954 5.954 22 Si 0.975 3.025 23 H -0.291 1.291 24 H -0.300 1.300 25 H -0.264 1.264 26 C 0.123 3.877 27 C 0.137 3.863 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.379 0.621 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.066 0.934 47 H -0.021 1.021 48 H 0.068 0.932 49 H 0.243 0.757 50 H 0.017 0.983 51 H 0.091 0.909 52 H 0.071 0.929 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.362 -19.789 -10.963 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C 0.131 3.869 4 C -0.205 4.205 5 O -0.371 6.371 6 C -0.196 4.196 7 C 0.295 3.705 8 O -0.443 6.443 9 N -0.330 5.330 10 C -0.026 4.026 11 C -0.162 4.162 12 C -0.173 4.173 13 C -0.112 4.112 14 C -0.070 4.070 15 C -0.161 4.161 16 C 0.027 3.973 17 N -0.339 5.339 18 C -0.349 4.349 19 H 0.106 0.894 20 C -0.265 4.265 21 N -0.604 5.604 22 Si 0.804 3.196 23 H -0.218 1.218 24 H -0.227 1.227 25 H -0.189 1.189 26 C -0.002 4.002 27 C 0.014 3.986 28 H 0.133 0.867 29 H 0.117 0.883 30 H 0.153 0.847 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.227 0.773 35 H 0.147 0.853 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.085 0.915 47 H -0.003 1.003 48 H 0.086 0.914 49 H 0.053 0.947 50 H 0.035 0.965 51 H 0.109 0.891 52 H 0.089 0.911 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.043 -19.137 -11.774 25.493 hybrid contribution 0.434 0.933 1.536 1.849 sum -11.608 -18.203 -10.237 23.894 Atomic orbital electron populations 1.24014 0.96114 1.02891 0.98725 1.23579 0.96799 0.98263 1.01932 1.19946 0.87981 0.84608 0.94342 1.21925 0.99172 1.03485 0.95908 1.86704 1.50741 1.50112 1.49549 1.22487 1.00568 0.95522 1.00985 1.21141 0.78801 0.89351 0.81163 1.90663 1.65262 1.51641 1.36753 1.47765 1.43656 1.18529 1.23093 1.21934 1.00396 0.92714 0.87509 1.21188 0.99133 0.97800 0.98095 1.20786 1.03090 0.94708 0.98705 1.20744 0.95045 0.97844 0.97613 1.21252 0.96510 0.94747 0.94500 1.22583 0.99196 0.95745 0.98592 1.21425 0.93672 0.91043 0.91179 1.45022 1.80043 1.02406 1.06466 1.19439 1.36987 0.93440 0.85051 0.89407 1.25601 1.03341 0.95241 1.02342 1.70046 1.56935 0.97703 1.35743 0.85107 0.77590 0.76855 0.80002 1.21796 1.22674 1.18884 1.22596 0.93530 0.92731 0.91303 1.21652 0.96087 0.85030 0.95810 0.86693 0.88336 0.84705 0.89785 0.93076 0.91834 0.77294 0.85291 0.86540 0.86895 0.90376 0.91582 0.88451 0.93181 0.90799 0.94737 0.92619 0.92236 0.91483 1.00317 0.91430 0.94702 0.96541 0.89135 0.91063 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 13.93 67.79 0.94 -1.07 16 2 C -0.19 -2.20 8.77 25.65 0.22 -1.97 16 3 C 0.17 2.92 0.94 -11.54 -0.01 2.91 16 4 C -0.15 -2.97 8.50 71.98 0.61 -2.36 16 5 O -0.56 -12.31 10.84 -131.51 -1.43 -13.74 16 6 C -0.16 -2.22 3.43 29.85 0.10 -2.12 16 7 C 0.51 11.91 7.19 87.65 0.63 12.54 16 8 O -0.56 -18.28 12.25 14.44 0.18 -18.10 16 9 N -0.60 -13.80 2.30 -819.11 -1.88 -15.68 16 10 C 0.10 1.67 5.10 87.31 0.44 2.12 16 11 C -0.12 -2.19 5.60 29.31 0.16 -2.03 16 12 C -0.14 -3.69 5.01 28.77 0.14 -3.54 16 13 C -0.07 -2.42 4.90 29.84 0.15 -2.27 16 14 C -0.07 -2.29 0.57 -51.97 -0.03 -2.32 16 15 C -0.12 -4.79 5.91 31.30 0.19 -4.60 16 16 C 0.15 7.68 6.01 86.57 0.52 8.20 16 17 N -0.62 -30.51 3.35 -690.17 -2.32 -32.82 16 18 C -0.22 -11.84 10.37 84.03 0.87 -10.97 16 19 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 21 N -0.95 -57.46 10.21 21.65 0.22 -57.24 16 22 Si 0.98 45.16 29.55 68.60 2.03 47.19 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 26 C 0.12 4.64 4.51 86.50 0.39 5.03 16 27 C 0.14 4.03 4.79 86.40 0.41 4.45 16 28 H 0.11 0.92 8.06 -2.91 -0.02 0.89 16 29 H 0.10 1.21 6.41 -2.91 -0.02 1.19 16 30 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 31 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.72 5.51 -2.39 -0.01 1.71 16 34 H 0.38 5.73 8.05 -74.06 -0.60 5.13 16 35 H 0.13 1.11 7.31 -2.39 -0.02 1.10 16 36 H 0.12 1.21 7.12 -2.38 -0.02 1.19 16 37 H 0.11 1.10 6.27 -2.39 -0.01 1.08 16 38 H 0.08 1.53 5.77 -2.39 -0.01 1.51 16 39 H 0.07 1.09 7.30 -2.38 -0.02 1.07 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 2.34 4.44 -2.39 -0.01 2.33 16 43 H 0.03 1.32 7.69 -2.39 -0.02 1.31 16 44 H 0.06 1.72 7.58 -2.39 -0.02 1.70 16 45 H 0.06 2.30 7.71 -2.38 -0.02 2.28 16 46 H 0.07 2.41 7.78 -2.39 -0.02 2.39 16 47 H -0.02 -1.16 8.14 -2.38 -0.02 -1.18 16 48 H 0.07 3.90 5.87 -2.39 -0.01 3.89 16 49 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 50 H 0.02 0.64 7.65 -2.39 -0.02 0.63 16 51 H 0.09 3.10 3.46 -2.39 -0.01 3.09 16 52 H 0.07 2.34 6.88 -2.39 -0.02 2.32 16 53 H 0.06 1.78 7.63 -2.39 -0.02 1.76 16 Total: -1.00 -72.92 384.26 3.34 -69.58 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.32 Total: 22.48 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 6.22 Total: -1.67 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -3.98 Total: -105.75 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -1.25 Total: -31.85 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -72.92 3.34 -69.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324549628.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.458 kcal (2) G-P(sol) polarization free energy of solvation -72.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds