Wall clock time and date at job start Tue Mar 31 2020 20:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50694 * 119.99690 * 2 1 4 4 C 1.53004 * 109.47250 * 240.00065 * 3 2 1 5 5 O 1.42900 * 109.47381 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47224 * 120.00397 * 3 2 1 7 7 C 1.50701 * 109.47506 * 179.97438 * 6 3 2 8 8 O 1.21282 * 119.99560 * 0.02562 * 7 6 3 9 9 N 1.35308 * 119.99890 * 179.97438 * 7 6 3 10 10 C 1.44314 * 118.00225 * 0.28869 * 9 7 6 11 11 C 1.54452 * 109.87463 * 262.99572 * 10 9 7 12 12 C 1.45420 * 112.76117 * 285.79404 * 11 10 9 13 13 C 1.52181 * 118.84315 * 56.91462 * 12 11 10 14 14 C 1.50757 * 112.21375 * 289.74948 * 13 12 11 15 15 C 1.52803 * 114.44498 * 323.92172 * 14 13 12 16 16 C 1.54917 * 105.10638 * 239.53312 * 15 14 13 17 17 N 1.48166 * 104.25715 * 24.32895 * 16 15 14 18 18 C 1.36998 * 127.88361 * 139.79436 * 17 16 15 19 19 H 1.08011 * 120.00056 * 341.12138 * 18 17 16 20 20 C 1.38812 * 120.00232 * 161.12489 * 18 17 16 21 21 N 1.31618 * 120.00149 * 163.62340 * 20 18 17 22 22 Si 1.86802 * 119.99946 * 343.62532 * 20 18 17 23 23 H 1.48506 * 109.46995 * 85.24394 * 22 20 18 24 24 H 1.48493 * 109.47236 * 205.24291 * 22 20 18 25 25 H 1.48498 * 109.46852 * 325.24348 * 22 20 18 26 26 C 1.48121 * 104.16756 * 319.93478 * 17 16 15 27 27 C 1.47051 * 118.20205 * 180.02562 * 9 7 6 28 28 H 1.08003 * 119.99708 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00046 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00046 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47081 * 300.01059 * 4 3 2 32 32 H 1.09000 * 109.46965 * 60.00187 * 4 3 2 33 33 H 1.08991 * 109.47534 * 180.02562 * 4 3 2 34 34 H 0.96698 * 113.99652 * 60.00058 * 5 3 2 35 35 H 1.09011 * 109.46852 * 59.99791 * 6 3 2 36 36 H 1.08997 * 109.47188 * 299.99970 * 6 3 2 37 37 H 1.08600 * 110.79206 * 141.07645 * 10 9 7 38 38 H 1.09553 * 108.72014 * 22.09463 * 10 9 7 39 39 H 1.09750 * 108.37555 * 164.66309 * 11 10 9 40 40 H 1.09506 * 109.05876 * 48.05242 * 11 10 9 41 41 H 1.10776 * 106.88453 * 177.40335 * 12 11 10 42 42 H 1.09226 * 109.31345 * 290.15903 * 12 11 10 43 43 H 1.09607 * 109.22081 * 50.61894 * 13 12 11 44 44 H 1.09466 * 109.22376 * 168.80479 * 13 12 11 45 45 H 1.08624 * 112.43907 * 358.38005 * 15 14 13 46 46 H 1.09466 * 110.69669 * 121.92244 * 15 14 13 47 47 H 1.08908 * 110.20221 * 142.86573 * 16 15 14 48 48 H 1.08849 * 110.31852 * 265.43180 * 16 15 14 49 49 H 0.97001 * 120.00100 * 180.02562 * 21 20 18 50 50 H 1.08886 * 110.76643 * 281.63313 * 26 17 16 51 51 H 1.08921 * 110.76566 * 158.36424 * 26 17 16 52 52 H 1.09150 * 109.09959 * 36.25186 * 27 9 7 53 53 H 1.09057 * 109.37569 * 277.47935 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 8 1.1349 2.3912 0.0006 6 6 2.9432 1.3862 1.2492 7 6 3.6971 2.6910 1.2489 8 8 3.5454 3.4788 0.3394 9 7 4.5425 2.9841 2.2640 10 6 4.6942 2.0135 3.3211 11 6 3.7820 2.3857 4.5106 12 6 4.2838 3.5188 5.2714 13 6 4.5345 4.8347 4.5494 14 6 5.7183 4.7579 3.6191 15 6 6.8689 3.8917 4.1300 16 6 8.0869 4.8456 4.2115 17 7 7.4865 6.1927 4.3534 18 6 7.9086 7.2218 5.1532 19 1 8.5655 7.0232 5.9872 20 6 7.4919 8.5199 4.8917 21 7 7.6179 9.4499 5.8145 22 14 6.7525 8.9467 3.2302 23 1 5.2995 8.6398 3.2415 24 1 6.9508 10.3927 2.9569 25 1 7.4192 8.1468 2.1716 26 6 6.3243 6.1702 3.4354 27 6 5.2575 4.2685 2.2241 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 3.6514 0.5577 -1.2494 32 1 2.3164 1.3285 -2.1392 33 1 3.4884 2.3299 -1.2491 34 1 0.5439 2.4029 0.7659 35 1 3.6516 0.5576 1.2491 36 1 2.3166 1.3284 2.1392 37 1 5.7286 1.9567 3.6469 38 1 4.3977 1.0299 2.9405 39 1 3.7009 1.5127 5.1708 40 1 2.7772 2.6065 4.1352 41 1 3.5386 3.7299 6.0634 42 1 5.1848 3.2204 5.8120 43 1 3.6440 5.1036 3.9697 44 1 4.7130 5.6227 5.2880 45 1 6.6703 3.4770 5.1141 46 1 7.0916 3.0874 3.4217 47 1 8.6945 4.6060 5.0830 48 1 8.6786 4.7818 3.3002 49 1 7.3264 10.3569 5.6319 50 1 6.6446 6.3065 2.4037 51 1 5.5955 6.9293 3.7163 52 1 4.6008 5.0297 1.7991 53 1 6.1385 4.1725 1.5885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324549632.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:17 Heat of formation + Delta-G solvation = -24.680289 kcal Electronic energy + Delta-G solvation = -31674.981728 eV Core-core repulsion = 27741.405303 eV Total energy + Delta-G solvation = -3933.576425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.81741 -39.35478 -37.84977 -36.28649 -33.78052 -33.28021 -32.91815 -31.70558 -31.11174 -29.23043 -28.47930 -27.28280 -25.63761 -25.02147 -23.39615 -22.73296 -21.21172 -20.49608 -19.94636 -19.00489 -18.33878 -17.36718 -17.00631 -16.83493 -16.30386 -15.95443 -15.34312 -15.24805 -14.86938 -14.67387 -14.31304 -13.93594 -13.87458 -13.52677 -13.44794 -13.18257 -12.95527 -12.78805 -12.50497 -12.43098 -12.38423 -12.15602 -11.98075 -11.85354 -11.66905 -11.39107 -11.29663 -11.21520 -11.03201 -10.91863 -10.54756 -10.43157 -10.39449 -10.24779 -9.95626 -9.87639 -9.79873 -9.75202 -9.45073 -9.34937 -8.80137 -8.51484 -7.09548 -5.92577 -3.26184 1.84024 2.63460 3.00550 3.33935 3.49590 3.50313 3.99788 4.28885 4.44545 4.53737 4.61035 4.67171 4.71627 4.78055 4.84047 4.88685 4.93421 5.14237 5.17291 5.20982 5.22823 5.37768 5.43478 5.46196 5.48033 5.57518 5.61054 5.66532 5.71599 5.77834 5.84644 5.92848 5.95356 6.05453 6.10592 6.13188 6.14393 6.19099 6.23922 6.33695 6.38268 6.42800 6.51793 6.55190 6.68688 6.73316 6.83302 6.86619 7.41497 7.47662 7.61957 8.24641 8.32216 8.78586 9.67055 10.22123 11.23885 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019239 B = 0.003198 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.041969 B = 8753.958710 C = 9327.026201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.186 4.186 3 C 0.176 3.824 4 C -0.148 4.148 5 O -0.537 6.537 6 C -0.163 4.163 7 C 0.506 3.494 8 O -0.518 6.518 9 N -0.600 5.600 10 C 0.100 3.900 11 C -0.124 4.124 12 C -0.118 4.118 13 C -0.092 4.092 14 C -0.072 4.072 15 C -0.125 4.125 16 C 0.125 3.875 17 N -0.605 5.605 18 C -0.232 4.232 19 H 0.094 0.906 20 C 0.018 3.982 21 N -0.916 5.916 22 Si 0.885 3.115 23 H -0.286 1.286 24 H -0.303 1.303 25 H -0.271 1.271 26 C 0.112 3.888 27 C 0.128 3.872 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.368 0.632 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.026 0.974 49 H 0.263 0.737 50 H 0.033 0.967 51 H 0.069 0.931 52 H 0.076 0.924 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.727 -23.275 -6.968 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.205 4.205 3 C 0.134 3.866 4 C -0.204 4.204 5 O -0.342 6.342 6 C -0.204 4.204 7 C 0.294 3.706 8 O -0.393 6.393 9 N -0.333 5.333 10 C -0.024 4.024 11 C -0.163 4.163 12 C -0.155 4.155 13 C -0.130 4.130 14 C -0.074 4.074 15 C -0.163 4.163 16 C -0.001 4.001 17 N -0.329 5.329 18 C -0.359 4.359 19 H 0.112 0.888 20 C -0.180 4.180 21 N -0.560 5.560 22 Si 0.716 3.284 23 H -0.214 1.214 24 H -0.231 1.231 25 H -0.197 1.197 26 C -0.015 4.015 27 C 0.006 3.994 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.215 0.785 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.044 0.956 49 H 0.073 0.927 50 H 0.051 0.949 51 H 0.087 0.913 52 H 0.094 0.906 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.422 -22.395 -7.858 26.339 hybrid contribution -0.731 0.054 -0.192 0.758 sum -12.153 -22.341 -8.050 26.676 Atomic orbital electron populations 1.23878 0.96054 1.02395 0.99494 1.23624 0.96754 0.98794 1.01307 1.19875 0.88036 0.84006 0.94637 1.21940 0.98849 1.04362 0.95282 1.86743 1.50050 1.48875 1.48517 1.22442 1.00273 0.97167 1.00476 1.20631 0.79423 0.88443 0.82151 1.90680 1.63771 1.49880 1.34980 1.47611 1.44002 1.19116 1.22555 1.21642 1.01712 0.90967 0.88044 1.20876 0.99289 0.98672 0.97465 1.20045 1.01842 0.95007 0.98584 1.20959 0.96519 0.96892 0.98614 1.21371 0.95181 0.97666 0.93197 1.22605 0.95690 0.97388 1.00653 1.21828 0.93833 0.85816 0.98626 1.45262 1.27189 1.11740 1.48739 1.18671 1.27801 0.84146 1.05294 0.88813 1.24996 0.99748 0.95401 0.97810 1.69763 1.50929 1.02741 1.32587 0.86955 0.78671 0.76488 0.86330 1.21352 1.23068 1.19664 1.22327 0.90962 0.94016 0.94184 1.22074 0.96050 0.84004 0.97238 0.88255 0.87701 0.86688 0.91966 0.92263 0.88657 0.78549 0.88154 0.88754 0.89459 0.90891 0.91393 0.92530 0.93388 0.91665 0.92771 0.90591 0.90944 0.92231 0.92705 0.95634 0.92701 0.94933 0.91274 0.90599 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 13.93 29.01 0.40 -0.82 16 2 C -0.19 -1.36 8.77 -36.03 -0.32 -1.67 16 3 C 0.18 1.67 0.94 -91.77 -0.09 1.58 16 4 C -0.15 -1.57 8.50 37.16 0.32 -1.25 16 5 O -0.54 -6.11 10.85 -53.48 -0.58 -6.69 16 6 C -0.16 -1.39 3.28 -27.88 -0.09 -1.48 16 7 C 0.51 6.39 7.18 -10.75 -0.08 6.32 16 8 O -0.52 -8.60 12.48 -12.70 -0.16 -8.76 16 9 N -0.60 -7.32 2.76 -172.56 -0.48 -7.80 16 10 C 0.10 0.92 5.14 -4.44 -0.02 0.90 16 11 C -0.12 -1.15 5.64 -29.54 -0.17 -1.31 16 12 C -0.12 -1.40 4.56 -30.72 -0.14 -1.54 16 13 C -0.09 -1.43 4.70 -28.27 -0.13 -1.57 16 14 C -0.07 -1.17 0.60 -153.82 -0.09 -1.26 16 15 C -0.12 -1.86 4.24 -25.82 -0.11 -1.97 16 16 C 0.13 2.36 7.27 -2.11 -0.02 2.34 16 17 N -0.60 -14.27 3.19 -168.45 -0.54 -14.80 16 18 C -0.23 -6.50 10.78 -15.03 -0.16 -6.66 16 19 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 20 C 0.02 0.54 5.49 -17.43 -0.10 0.44 16 21 N -0.92 -28.32 13.97 55.49 0.78 -27.54 16 22 Si 0.88 22.95 24.51 -169.99 -4.17 18.79 16 23 H -0.29 -7.19 6.35 56.52 0.36 -6.83 16 24 H -0.30 -7.99 7.11 56.52 0.40 -7.58 16 25 H -0.27 -6.92 6.35 56.52 0.36 -6.56 16 26 C 0.11 2.38 3.53 -2.21 -0.01 2.37 16 27 C 0.13 1.96 3.84 -2.76 -0.01 1.95 16 28 H 0.10 0.53 8.06 -52.48 -0.42 0.11 16 29 H 0.10 0.72 6.41 -52.49 -0.34 0.39 16 30 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.30 5.51 -51.93 -0.29 1.02 16 34 H 0.37 2.95 8.05 45.56 0.37 3.32 16 35 H 0.10 0.65 7.29 -51.92 -0.38 0.27 16 36 H 0.09 0.66 8.06 -51.93 -0.42 0.24 16 37 H 0.09 0.81 5.20 -52.15 -0.27 0.54 16 38 H 0.07 0.48 5.83 -51.62 -0.30 0.18 16 39 H 0.07 0.49 8.20 -51.50 -0.42 0.06 16 40 H 0.06 0.54 8.18 -51.64 -0.42 0.11 16 41 H 0.05 0.56 8.24 -50.91 -0.42 0.14 16 42 H 0.06 0.79 5.96 -51.80 -0.31 0.48 16 43 H 0.05 0.85 7.88 -51.58 -0.41 0.44 16 44 H 0.08 1.39 7.76 -51.67 -0.40 0.99 16 45 H 0.07 1.02 5.65 -52.14 -0.29 0.72 16 46 H 0.06 0.76 6.32 -51.67 -0.33 0.44 16 47 H 0.05 1.01 8.13 -51.98 -0.42 0.59 16 48 H 0.03 0.48 8.13 -52.01 -0.42 0.05 16 49 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 50 H 0.03 0.72 6.44 -51.99 -0.33 0.38 16 51 H 0.07 1.62 4.56 -51.97 -0.24 1.38 16 52 H 0.08 1.31 7.46 -51.84 -0.39 0.93 16 53 H 0.06 0.93 8.10 -51.90 -0.42 0.51 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -33.68 382.10 -8.38 -42.06 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.18 Total: 2.65 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.81 Total: -3.66 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.24 Total: -50.14 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.74 Total: -15.45 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.17 Total: 18.79 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.68 -8.38 -42.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324549632.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.380 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds