Wall clock time and date at job start Tue Mar 31 2020 20:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50694 * 119.99690 * 2 1 4 4 C 1.53004 * 109.47250 * 240.00065 * 3 2 1 5 5 O 1.42900 * 109.47381 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47224 * 120.00397 * 3 2 1 7 7 C 1.50701 * 109.47506 * 179.97438 * 6 3 2 8 8 O 1.21282 * 119.99560 * 0.02562 * 7 6 3 9 9 N 1.35308 * 119.99890 * 179.97438 * 7 6 3 10 10 C 1.44314 * 118.00225 * 0.28869 * 9 7 6 11 11 C 1.54452 * 109.87463 * 262.99572 * 10 9 7 12 12 C 1.45420 * 112.76117 * 285.79404 * 11 10 9 13 13 C 1.52181 * 118.84315 * 56.91462 * 12 11 10 14 14 C 1.50757 * 112.21375 * 289.74948 * 13 12 11 15 15 C 1.52803 * 114.44498 * 323.92172 * 14 13 12 16 16 C 1.54917 * 105.10638 * 239.53312 * 15 14 13 17 17 N 1.48166 * 104.25715 * 24.32895 * 16 15 14 18 18 C 1.36998 * 127.88361 * 139.79436 * 17 16 15 19 19 H 1.08011 * 120.00056 * 341.12138 * 18 17 16 20 20 C 1.38812 * 120.00232 * 161.12489 * 18 17 16 21 21 N 1.31618 * 120.00149 * 163.62340 * 20 18 17 22 22 Si 1.86802 * 119.99946 * 343.62532 * 20 18 17 23 23 H 1.48506 * 109.46995 * 85.24394 * 22 20 18 24 24 H 1.48493 * 109.47236 * 205.24291 * 22 20 18 25 25 H 1.48498 * 109.46852 * 325.24348 * 22 20 18 26 26 C 1.48121 * 104.16756 * 319.93478 * 17 16 15 27 27 C 1.47051 * 118.20205 * 180.02562 * 9 7 6 28 28 H 1.08003 * 119.99708 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00046 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00046 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47081 * 300.01059 * 4 3 2 32 32 H 1.09000 * 109.46965 * 60.00187 * 4 3 2 33 33 H 1.08991 * 109.47534 * 180.02562 * 4 3 2 34 34 H 0.96698 * 113.99652 * 60.00058 * 5 3 2 35 35 H 1.09011 * 109.46852 * 59.99791 * 6 3 2 36 36 H 1.08997 * 109.47188 * 299.99970 * 6 3 2 37 37 H 1.08600 * 110.79206 * 141.07645 * 10 9 7 38 38 H 1.09553 * 108.72014 * 22.09463 * 10 9 7 39 39 H 1.09750 * 108.37555 * 164.66309 * 11 10 9 40 40 H 1.09506 * 109.05876 * 48.05242 * 11 10 9 41 41 H 1.10776 * 106.88453 * 177.40335 * 12 11 10 42 42 H 1.09226 * 109.31345 * 290.15903 * 12 11 10 43 43 H 1.09607 * 109.22081 * 50.61894 * 13 12 11 44 44 H 1.09466 * 109.22376 * 168.80479 * 13 12 11 45 45 H 1.08624 * 112.43907 * 358.38005 * 15 14 13 46 46 H 1.09466 * 110.69669 * 121.92244 * 15 14 13 47 47 H 1.08908 * 110.20221 * 142.86573 * 16 15 14 48 48 H 1.08849 * 110.31852 * 265.43180 * 16 15 14 49 49 H 0.97001 * 120.00100 * 180.02562 * 21 20 18 50 50 H 1.08886 * 110.76643 * 281.63313 * 26 17 16 51 51 H 1.08921 * 110.76566 * 158.36424 * 26 17 16 52 52 H 1.09150 * 109.09959 * 36.25186 * 27 9 7 53 53 H 1.09057 * 109.37569 * 277.47935 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 8 1.1349 2.3912 0.0006 6 6 2.9432 1.3862 1.2492 7 6 3.6971 2.6910 1.2489 8 8 3.5454 3.4788 0.3394 9 7 4.5425 2.9841 2.2640 10 6 4.6942 2.0135 3.3211 11 6 3.7820 2.3857 4.5106 12 6 4.2838 3.5188 5.2714 13 6 4.5345 4.8347 4.5494 14 6 5.7183 4.7579 3.6191 15 6 6.8689 3.8917 4.1300 16 6 8.0869 4.8456 4.2115 17 7 7.4865 6.1927 4.3534 18 6 7.9086 7.2218 5.1532 19 1 8.5655 7.0232 5.9872 20 6 7.4919 8.5199 4.8917 21 7 7.6179 9.4499 5.8145 22 14 6.7525 8.9467 3.2302 23 1 5.2995 8.6398 3.2415 24 1 6.9508 10.3927 2.9569 25 1 7.4192 8.1468 2.1716 26 6 6.3243 6.1702 3.4354 27 6 5.2575 4.2685 2.2241 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 3.6514 0.5577 -1.2494 32 1 2.3164 1.3285 -2.1392 33 1 3.4884 2.3299 -1.2491 34 1 0.5439 2.4029 0.7659 35 1 3.6516 0.5576 1.2491 36 1 2.3166 1.3284 2.1392 37 1 5.7286 1.9567 3.6469 38 1 4.3977 1.0299 2.9405 39 1 3.7009 1.5127 5.1708 40 1 2.7772 2.6065 4.1352 41 1 3.5386 3.7299 6.0634 42 1 5.1848 3.2204 5.8120 43 1 3.6440 5.1036 3.9697 44 1 4.7130 5.6227 5.2880 45 1 6.6703 3.4770 5.1141 46 1 7.0916 3.0874 3.4217 47 1 8.6945 4.6060 5.0830 48 1 8.6786 4.7818 3.3002 49 1 7.3264 10.3569 5.6319 50 1 6.6446 6.3065 2.4037 51 1 5.5955 6.9293 3.7163 52 1 4.6008 5.0297 1.7991 53 1 6.1385 4.1725 1.5885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324549632.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:16 Heat of formation + Delta-G solvation = -47.809421 kcal Electronic energy + Delta-G solvation = -31675.984683 eV Core-core repulsion = 27741.405303 eV Total energy + Delta-G solvation = -3934.579379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.83730 -40.44846 -38.80028 -37.49276 -35.03556 -34.49635 -33.94664 -33.14780 -32.01232 -30.83807 -29.31172 -28.53168 -26.89472 -26.46041 -24.69194 -23.60336 -22.53487 -21.88851 -20.56069 -19.88295 -19.64010 -18.95915 -18.14879 -17.80412 -17.24724 -17.16976 -16.71914 -16.16951 -16.00452 -15.73130 -15.52181 -15.37718 -15.07637 -14.82474 -14.62800 -14.39788 -14.16057 -13.92963 -13.82156 -13.53835 -13.23396 -13.19227 -13.12146 -13.04351 -12.70458 -12.64140 -12.54002 -12.44356 -12.29360 -12.07789 -11.95728 -11.86524 -11.58954 -11.55078 -11.33276 -11.16323 -11.05932 -10.96386 -10.90454 -10.44031 -10.27871 -9.51692 -9.11611 -8.19997 -5.47546 1.22056 1.31590 1.34745 1.38236 1.72907 2.06560 2.35049 3.04544 3.22368 3.35012 3.52812 3.63881 3.69489 3.78016 3.83475 3.97712 4.05656 4.10968 4.16378 4.22436 4.29685 4.39156 4.44144 4.50164 4.52814 4.61313 4.68356 4.69733 4.71229 4.78172 4.79862 4.87130 4.89047 4.96478 4.97707 5.02267 5.13227 5.17699 5.19728 5.24771 5.26814 5.39144 5.40832 5.48065 5.61333 5.66504 5.69400 5.75728 5.86053 6.08297 6.52667 6.67619 6.88251 7.33039 7.47933 8.13937 9.00492 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019239 B = 0.003198 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.041969 B = 8753.958710 C = 9327.026201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.186 4.186 3 C 0.170 3.830 4 C -0.149 4.149 5 O -0.566 6.566 6 C -0.153 4.153 7 C 0.500 3.500 8 O -0.566 6.566 9 N -0.597 5.597 10 C 0.091 3.909 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.089 4.089 14 C -0.057 4.057 15 C -0.108 4.108 16 C 0.117 3.883 17 N -0.626 5.626 18 C -0.214 4.214 19 H 0.069 0.931 20 C -0.038 4.038 21 N -0.961 5.961 22 Si 0.938 3.062 23 H -0.281 1.281 24 H -0.308 1.308 25 H -0.266 1.266 26 C 0.106 3.894 27 C 0.140 3.860 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.379 0.621 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.044 0.956 44 H 0.037 0.963 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.058 0.942 48 H 0.034 0.966 49 H 0.261 0.739 50 H 0.026 0.974 51 H 0.041 0.959 52 H 0.045 0.955 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 -28.395 -7.235 31.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.204 4.204 3 C 0.129 3.871 4 C -0.206 4.206 5 O -0.373 6.373 6 C -0.192 4.192 7 C 0.290 3.710 8 O -0.445 6.445 9 N -0.329 5.329 10 C -0.031 4.031 11 C -0.161 4.161 12 C -0.149 4.149 13 C -0.127 4.127 14 C -0.059 4.059 15 C -0.146 4.146 16 C -0.008 4.008 17 N -0.351 5.351 18 C -0.342 4.342 19 H 0.087 0.913 20 C -0.232 4.232 21 N -0.609 5.609 22 Si 0.769 3.231 23 H -0.209 1.209 24 H -0.237 1.237 25 H -0.191 1.191 26 C -0.020 4.020 27 C 0.016 3.984 28 H 0.134 0.866 29 H 0.115 0.885 30 H 0.155 0.845 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.227 0.773 35 H 0.152 0.848 36 H 0.138 0.862 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.070 0.930 50 H 0.044 0.956 51 H 0.059 0.941 52 H 0.064 0.936 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.515 -27.594 -8.126 31.371 hybrid contribution -0.383 1.613 -0.104 1.662 sum -12.899 -25.981 -8.230 30.152 Atomic orbital electron populations 1.24021 0.96155 1.02867 0.98739 1.23571 0.96746 0.98196 1.01913 1.19976 0.88010 0.84665 0.94403 1.21930 0.99211 1.03438 0.95996 1.86715 1.50831 1.50200 1.49555 1.22473 1.00517 0.95271 1.00963 1.21446 0.78945 0.89457 0.81142 1.90684 1.65185 1.51759 1.36846 1.47646 1.43531 1.18187 1.23582 1.21973 1.02268 0.91681 0.87195 1.20870 0.98951 0.98518 0.97805 1.20005 1.02384 0.93899 0.98580 1.20898 0.95758 0.98469 0.97558 1.21193 0.95746 0.94628 0.94322 1.22558 0.92650 0.96800 1.02620 1.22115 0.95645 0.83906 0.99103 1.45372 1.28726 1.12503 1.48487 1.18643 1.25679 0.85297 1.04598 0.91296 1.25533 1.01574 0.95695 1.00405 1.69875 1.53729 1.03058 1.34248 0.86073 0.78341 0.75645 0.83068 1.20873 1.23713 1.19096 1.22353 0.89908 0.96754 0.93009 1.21679 0.95582 0.85416 0.95685 0.86617 0.88480 0.84483 0.89553 0.93183 0.92099 0.77275 0.84845 0.86229 0.88915 0.86870 0.87707 0.92541 0.93093 0.91197 0.93679 0.94405 0.89183 0.88782 0.92362 0.94810 0.93000 0.95634 0.94060 0.93610 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 13.93 67.77 0.94 -0.93 16 2 C -0.19 -1.98 8.77 25.64 0.22 -1.76 16 3 C 0.17 2.77 0.94 -11.54 -0.01 2.75 16 4 C -0.15 -2.95 8.50 71.98 0.61 -2.34 16 5 O -0.57 -12.27 10.85 -131.53 -1.43 -13.70 16 6 C -0.15 -1.93 3.28 29.85 0.10 -1.83 16 7 C 0.50 11.44 7.18 87.57 0.63 12.07 16 8 O -0.57 -18.78 12.48 14.42 0.18 -18.60 16 9 N -0.60 -12.76 2.76 -817.95 -2.25 -15.01 16 10 C 0.09 1.17 5.14 87.28 0.45 1.62 16 11 C -0.12 -1.63 5.64 28.78 0.16 -1.47 16 12 C -0.11 -2.31 4.56 28.01 0.13 -2.19 16 13 C -0.09 -2.72 4.70 29.60 0.14 -2.58 16 14 C -0.06 -1.80 0.60 -51.73 -0.03 -1.83 16 15 C -0.11 -2.91 4.24 31.18 0.13 -2.78 16 16 C 0.12 4.23 7.27 86.71 0.63 4.86 16 17 N -0.63 -29.84 3.19 -686.87 -2.19 -32.03 16 18 C -0.21 -12.34 10.78 84.02 0.91 -11.43 16 19 H 0.07 4.25 8.06 -2.91 -0.02 4.23 16 20 C -0.04 -2.31 5.49 84.86 0.47 -1.85 16 21 N -0.96 -61.96 13.97 21.65 0.30 -61.65 16 22 Si 0.94 49.55 24.51 68.60 1.68 51.23 16 23 H -0.28 -14.44 6.35 99.48 0.63 -13.81 16 24 H -0.31 -16.42 7.11 99.48 0.71 -15.71 16 25 H -0.27 -13.59 6.35 99.48 0.63 -12.96 16 26 C 0.11 4.58 3.53 86.67 0.31 4.89 16 27 C 0.14 4.12 3.84 86.91 0.33 4.46 16 28 H 0.12 0.82 8.06 -2.91 -0.02 0.79 16 29 H 0.10 1.14 6.41 -2.91 -0.02 1.12 16 30 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.67 5.51 -2.39 -0.01 1.65 16 34 H 0.38 5.57 8.05 -74.06 -0.60 4.97 16 35 H 0.13 0.85 7.29 -2.38 -0.02 0.83 16 36 H 0.12 0.97 8.06 -2.39 -0.02 0.96 16 37 H 0.09 1.14 5.20 -2.60 -0.01 1.13 16 38 H 0.11 0.64 5.83 -2.09 -0.01 0.63 16 39 H 0.10 0.77 8.20 -1.99 -0.02 0.75 16 40 H 0.06 0.80 8.18 -2.12 -0.02 0.78 16 41 H 0.05 1.04 8.24 -1.43 -0.01 1.03 16 42 H 0.07 1.41 5.96 -2.27 -0.01 1.39 16 43 H 0.04 1.43 7.88 -2.06 -0.02 1.41 16 44 H 0.04 1.43 7.76 -2.14 -0.02 1.41 16 45 H 0.09 2.16 5.65 -2.59 -0.01 2.15 16 46 H 0.09 1.96 6.32 -2.14 -0.01 1.94 16 47 H 0.06 2.06 8.13 -2.44 -0.02 2.04 16 48 H 0.03 1.19 8.13 -2.47 -0.02 1.17 16 49 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 50 H 0.03 1.15 6.44 -2.45 -0.02 1.13 16 51 H 0.04 2.01 4.56 -2.43 -0.01 2.00 16 52 H 0.05 1.62 7.46 -2.31 -0.02 1.61 16 53 H 0.06 1.68 8.10 -2.36 -0.02 1.66 16 Total: -1.00 -79.99 382.10 2.59 -77.40 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.18 Total: 12.69 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 6.12 Total: -0.33 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -4.14 Total: -108.70 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.25 Total: -32.30 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 1.68 Total: 51.23 kcal Total: -79.99 2.59 -77.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324549632.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.590 kcal (2) G-P(sol) polarization free energy of solvation -79.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds