Wall clock time and date at job start Tue Mar 31 2020 20:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47254 * 2 1 4 4 C 1.53003 * 109.46957 * 119.99616 * 2 1 3 5 5 N 1.46491 * 109.47289 * 64.99803 * 4 2 1 6 6 C 1.34788 * 119.99847 * 75.17368 * 5 4 2 7 7 O 1.21352 * 120.00029 * 182.93662 * 6 5 4 8 8 C 1.49446 * 119.99784 * 2.94512 * 6 5 4 9 9 O 1.21353 * 120.00205 * 353.16888 * 8 6 5 10 10 N 1.34780 * 120.00162 * 173.16876 * 8 6 5 11 11 C 1.46494 * 120.00485 * 185.03280 * 10 8 6 12 12 C 1.52991 * 109.47475 * 185.22528 * 11 10 8 13 13 C 1.50694 * 115.55115 * 53.51832 * 12 11 10 14 14 H 1.08002 * 120.00378 * 270.06025 * 13 12 11 15 15 C 1.37878 * 120.00189 * 90.05476 * 13 12 11 16 16 N 1.31515 * 120.00307 * 181.02729 * 15 13 12 17 17 Si 1.86805 * 119.99527 * 1.02286 * 15 13 12 18 18 H 1.48509 * 109.46794 * 92.65176 * 17 15 13 19 19 H 1.48502 * 109.46948 * 212.64360 * 17 15 13 20 20 H 1.48491 * 109.47344 * 332.64987 * 17 15 13 21 21 C 1.52999 * 117.49909 * 267.85181 * 12 11 10 22 22 C 1.53001 * 117.49944 * 199.19076 * 12 11 10 23 23 C 1.46494 * 120.00446 * 255.17748 * 5 4 2 24 24 C 1.54272 * 110.03320 * 239.05492 * 23 5 4 25 25 C 1.54970 * 104.15936 * 217.13640 * 24 23 5 26 26 C 1.54886 * 102.77980 * 37.88362 * 25 24 23 27 27 C 1.53876 * 110.03730 * 121.83698 * 23 5 4 28 28 H 1.08998 * 109.47370 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46803 * 300.00654 * 1 2 3 30 30 H 1.08999 * 109.46910 * 60.00054 * 1 2 3 31 31 H 1.08991 * 109.47306 * 239.99156 * 2 1 3 32 32 H 1.08994 * 109.46943 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46594 * 299.99868 * 3 2 1 34 34 H 1.09000 * 109.47482 * 59.99241 * 3 2 1 35 35 H 1.09000 * 109.47002 * 185.00042 * 4 2 1 36 36 H 1.09005 * 109.47212 * 305.00094 * 4 2 1 37 37 H 0.96998 * 119.99582 * 5.04145 * 10 8 6 38 38 H 1.08998 * 109.47060 * 305.23089 * 11 10 8 39 39 H 1.09002 * 109.46587 * 65.22494 * 11 10 8 40 40 H 0.97007 * 120.00031 * 180.02562 * 16 15 13 41 41 H 1.08999 * 117.50091 * 359.97438 * 21 12 11 42 42 H 1.09002 * 117.50208 * 145.01581 * 21 12 11 43 43 H 1.09000 * 117.49936 * 214.97507 * 22 12 11 44 44 H 1.09001 * 117.49980 * 359.97438 * 22 12 11 45 45 H 1.08997 * 110.01724 * 0.44526 * 23 5 4 46 46 H 1.09002 * 110.48508 * 335.78182 * 24 23 5 47 47 H 1.08997 * 110.48791 * 98.42564 * 24 23 5 48 48 H 1.09007 * 110.71500 * 279.57219 * 25 24 23 49 49 H 1.08996 * 110.92256 * 156.30035 * 25 24 23 50 50 H 1.08999 * 110.49118 * 203.40752 * 26 25 24 51 51 H 1.08999 * 110.59617 * 80.81867 * 26 25 24 52 52 H 1.08999 * 110.03066 * 238.57583 * 27 23 5 53 53 H 1.09003 * 110.02849 * 0.02562 * 27 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1327 1.1908 6 6 2.3048 -2.9771 0.3673 7 8 1.9495 -4.1341 0.2791 8 6 3.4658 -2.4885 -0.4369 9 8 3.7445 -1.3074 -0.4446 10 7 4.2033 -3.3595 -1.1538 11 6 5.4056 -2.8996 -1.8531 12 6 5.9790 -4.0453 -2.6893 13 6 5.0126 -4.7026 -3.6405 14 1 4.4227 -5.5462 -3.3138 15 6 4.8813 -4.2271 -4.9280 16 7 4.0233 -4.7879 -5.7520 17 14 5.9222 -2.7860 -5.5020 18 1 7.1623 -3.2947 -6.1414 19 1 5.1535 -1.9804 -6.4845 20 1 6.2784 -1.9374 -4.3366 21 6 7.0424 -4.9317 -2.0380 22 6 7.4400 -3.9356 -3.1302 23 6 0.5558 -2.6265 2.0272 24 6 1.0636 -3.7486 2.9562 25 6 -0.1148 -4.7532 3.0165 26 6 -0.6625 -4.7263 1.5679 27 6 -0.5415 -3.2476 1.1452 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8898 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1263 -0.6443 1.2952 36 1 1.6053 -0.2616 2.1371 37 1 3.9380 -4.2910 -1.2067 38 1 5.1492 -2.0657 -2.5066 39 1 6.1480 -2.5749 -1.1241 40 1 3.9313 -4.4535 -6.6579 41 1 7.3338 -4.6985 -1.0139 42 1 7.0433 -5.9903 -2.2978 43 1 7.7022 -4.3393 -4.1081 44 1 7.9925 -3.0470 -2.8249 45 1 0.1415 -1.8105 2.6193 46 1 1.9483 -4.2237 2.5322 47 1 1.2802 -3.3534 3.9486 48 1 -0.8735 -4.4156 3.7227 49 1 0.2373 -5.7510 3.2780 50 1 -1.7047 -5.0447 1.5481 51 1 -0.0587 -5.3595 0.9179 52 1 -1.4884 -2.7335 1.3098 53 1 -0.2578 -3.1820 0.0947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324838524.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:16 Heat of formation + Delta-G solvation = -66.728125 kcal Electronic energy + Delta-G solvation = -31485.861052 eV Core-core repulsion = 27550.461296 eV Total energy + Delta-G solvation = -3935.399756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.12694 -40.16295 -38.79664 -38.30353 -37.33744 -35.05932 -34.28406 -34.21472 -29.68249 -29.44117 -28.71608 -27.86699 -27.58889 -26.88486 -24.50837 -23.39399 -22.11367 -21.56323 -21.23469 -21.03567 -20.03380 -18.76587 -18.31854 -17.60681 -17.11536 -17.07907 -16.68101 -16.55119 -16.00471 -15.73974 -15.61110 -15.39917 -14.89375 -14.76949 -14.74800 -14.58596 -14.30306 -13.97556 -13.80890 -13.66514 -13.16119 -13.09159 -12.97039 -12.87189 -12.72814 -12.57158 -12.42047 -12.18608 -12.09856 -12.00806 -11.92641 -11.85943 -11.73321 -11.56987 -11.46390 -11.39920 -11.38027 -11.01375 -10.67117 -10.51228 -10.20186 -9.95359 -9.64280 -8.31139 -6.39025 0.48593 1.32277 1.37936 1.42279 1.49070 2.23659 2.34820 2.53822 3.03534 3.17546 3.48302 3.70650 3.71648 3.88924 3.98738 4.05556 4.11067 4.26219 4.32638 4.37190 4.44324 4.46893 4.50926 4.56324 4.61689 4.65711 4.73762 4.80057 4.81293 4.82810 4.85079 4.90358 4.94308 5.02438 5.06554 5.07221 5.07438 5.13500 5.23055 5.27421 5.30136 5.32810 5.39588 5.47525 5.48570 5.55659 5.55922 5.67249 5.72953 6.05986 6.25908 6.41268 6.70197 6.82313 7.08877 7.31668 8.83854 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.003792 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.293363 B = 7382.685132 C = 8180.525987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.130 4.130 4 C 0.116 3.884 5 N -0.570 5.570 6 C 0.505 3.495 7 O -0.532 6.532 8 C 0.488 3.512 9 O -0.532 6.532 10 N -0.676 5.676 11 C 0.165 3.835 12 C -0.045 4.045 13 C -0.481 4.481 14 H 0.037 0.963 15 C 0.023 3.977 16 N -0.946 5.946 17 Si 0.936 3.064 18 H -0.267 1.267 19 H -0.305 1.305 20 H -0.233 1.233 21 C -0.157 4.157 22 C -0.186 4.186 23 C 0.142 3.858 24 C -0.133 4.133 25 C -0.110 4.110 26 C -0.121 4.121 27 C -0.126 4.126 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.411 0.589 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.264 0.736 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.129 0.871 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.062 0.938 50 H 0.072 0.928 51 H 0.042 0.958 52 H 0.088 0.912 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 10.050 20.661 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.188 4.188 4 C -0.005 4.005 5 N -0.303 5.303 6 C 0.287 3.713 7 O -0.409 6.409 8 C 0.269 3.731 9 O -0.411 6.411 10 N -0.326 5.326 11 C 0.041 3.959 12 C -0.046 4.046 13 C -0.519 4.519 14 H 0.055 0.945 15 C -0.175 4.175 16 N -0.585 5.585 17 Si 0.761 3.239 18 H -0.192 1.192 19 H -0.233 1.233 20 H -0.156 1.156 21 C -0.194 4.194 22 C -0.223 4.223 23 C 0.040 3.960 24 C -0.172 4.172 25 C -0.148 4.148 26 C -0.159 4.159 27 C -0.164 4.164 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.127 0.873 37 H 0.247 0.753 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.147 0.853 46 H 0.066 0.934 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.081 0.919 50 H 0.091 0.909 51 H 0.061 0.939 52 H 0.107 0.893 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.329 10.279 20.457 23.753 hybrid contribution 0.236 -0.383 -1.638 1.699 sum -6.093 9.897 18.819 22.118 Atomic orbital electron populations 1.21907 0.94573 1.01533 1.02285 1.21474 0.95979 0.97228 0.98162 1.21602 1.00740 0.94359 1.02123 1.22084 1.01673 0.77952 0.98801 1.48052 1.33103 1.09904 1.39198 1.20068 0.83984 0.85954 0.81300 1.90746 1.66673 1.18364 1.65097 1.20429 0.84490 0.86419 0.81746 1.90671 1.70400 1.15633 1.64371 1.45752 1.26232 1.13431 1.47176 1.21022 0.85193 0.95934 0.93716 1.19482 0.88770 0.97179 0.99182 1.20314 1.21704 1.14564 0.95277 0.94509 1.25807 0.95955 0.98939 0.96794 1.70047 1.37697 1.43713 1.07083 0.85951 0.78708 0.80278 0.78942 1.19223 1.23330 1.15570 1.22944 1.03164 0.96409 0.96884 1.23003 0.97892 1.02109 0.99322 1.22184 0.85298 0.97946 0.90594 1.22734 0.98847 0.96207 0.99370 1.22382 0.97246 0.98910 0.96280 1.22260 1.00613 0.95992 0.97022 1.22450 0.98685 0.96661 0.98630 0.93471 0.90419 0.93516 0.93999 0.93444 0.93261 0.90631 0.89916 0.87275 0.75331 0.93436 0.90787 0.92718 0.87582 0.90072 0.90414 0.87580 0.85343 0.93357 0.89301 0.89096 0.91946 0.90929 0.93946 0.89300 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.00 71.98 0.65 -2.24 16 2 C -0.11 -2.59 2.26 -10.79 -0.02 -2.61 16 3 C -0.13 -2.66 9.19 71.98 0.66 -2.00 16 4 C 0.12 2.47 4.48 86.38 0.39 2.86 16 5 N -0.57 -14.04 2.03 -795.37 -1.62 -15.65 16 6 C 0.50 16.69 6.36 87.27 0.56 17.24 16 7 O -0.53 -19.88 12.45 -3.25 -0.04 -19.92 16 8 C 0.49 17.91 7.39 87.27 0.64 18.55 16 9 O -0.53 -19.44 11.25 -3.26 -0.04 -19.47 16 10 N -0.68 -26.82 5.33 -464.43 -2.48 -29.30 16 11 C 0.16 6.58 5.45 86.38 0.47 7.05 16 12 C -0.05 -1.94 0.97 -52.93 -0.05 -1.99 16 13 C -0.48 -26.28 8.78 25.60 0.22 -26.05 16 14 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 15 C 0.02 1.31 5.47 84.65 0.46 1.77 16 16 N -0.95 -59.04 13.96 21.45 0.30 -58.74 16 17 Si 0.94 44.26 24.77 68.60 1.70 45.96 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.31 -14.89 7.11 99.48 0.71 -14.18 16 20 H -0.23 -10.01 5.71 99.48 0.57 -9.44 16 21 C -0.16 -5.68 9.92 30.62 0.30 -5.38 16 22 C -0.19 -7.02 7.30 30.62 0.22 -6.80 16 23 C 0.14 2.72 2.96 45.72 0.14 2.86 16 24 C -0.13 -2.60 6.10 31.70 0.19 -2.41 16 25 C -0.11 -1.97 6.91 31.91 0.22 -1.75 16 26 C -0.12 -2.72 6.39 31.67 0.20 -2.52 16 27 C -0.13 -2.75 4.41 31.32 0.14 -2.62 16 28 H 0.05 1.03 5.49 -2.39 -0.01 1.02 16 29 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 1.37 5.95 -2.39 -0.01 1.36 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 2.05 6.13 -2.39 -0.01 2.04 16 36 H 0.11 1.49 7.67 -2.38 -0.02 1.47 16 37 H 0.41 17.30 7.58 -92.71 -0.70 16.60 16 38 H 0.05 2.08 6.99 -2.39 -0.02 2.06 16 39 H 0.07 2.56 8.08 -2.39 -0.02 2.55 16 40 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 41 H 0.11 3.18 8.14 -2.39 -0.02 3.17 16 42 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.08 3.16 6.79 -2.39 -0.02 3.14 16 44 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 45 H 0.13 1.57 7.66 -2.39 -0.02 1.55 16 46 H 0.05 1.28 6.31 -2.39 -0.02 1.26 16 47 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.04 1.26 7.23 -2.39 -0.02 1.25 16 52 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.04 1.12 6.51 -2.39 -0.02 1.11 16 Total: -1.00 -67.78 397.70 3.28 -64.50 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: 0.05 Total: 38.67 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 5.40 Total: -6.03 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -3.79 Total: -103.70 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.08 Total: -39.39 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.70 Total: 45.96 kcal Total: -67.78 3.28 -64.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324838524.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.230 kcal (2) G-P(sol) polarization free energy of solvation -67.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds